GEISHA - A Chicken Embryo Gene Expression Database
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JMJD4
jumonji domain containing 4

Gene
Official SymbolJMJD4
Official Full Namejumonji domain containing 4
CGNC ID4036
also known as2-oxoglutarate and iron-dependent oxygenase JMJD4|jmjC domain-containing protein 4|jumonji domain-containing protein 4|lysyl-hydroxylase JMJD4
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001030959
PolypeptideNP_001026130
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.50870
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly35089FBgn0032671
Human65094ENSG00000081692
Mouse194952ENSMUSG00000036819All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:2144404
Xenopus100491509, 1001376821007412
Zebrafish767690ENSDARG00000058995ZDB-GENE-060929-636ZFIN:ZDB-GENE-060929-636
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene420400
Ensembl GeneENSGALG00000005417
KEGGgga:420400
GEISHA IdJMJD4.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CACAGCTAAATTACTGTCAGACCTGTCCTGTTTCCAGGTGTAGCTTAGACTTTTAATTGCTTCCCCTGAAGCCTAAGCT
GTCTCAACAGCTGTAGCTTGGATATAGAAAAGCTGACTACTTGTTTCTTACACAGTGGCATCTCTAAAGCTAAAAGTCT
CAGGTATGCTTGGCTTTCATATTGCTCCAGGGCCTGCAGGACTAAATTTAACATACAAGGAAGATGAAGTCCTGCTAGC
AACTCTATCATTAATAATTTAACAGTGTGAACCACACAAGCTCAAAAGAGGCTTGAATGTACTCCCTCATTTCTACACA
GTATTTCAAGGCACAATATTTTATCAAGCAGAGACTTGATGAACTCAGGGAAGCTAGCAAGTAACCTTGTACTATCTCC
TTAAAAAGCCATGCTTTTAACAACAAATAGCACTACTGCATGGTTACAGAGCACAATTTGCTACCTGAATGCTACCCTT
GCGCTAAAGAGCATTTCTAGTGAAGTATTCCTCTTGCTTTTACTGGTTGGCAAGAAAGCCTAGAAGCACAAATGGCTGC
ACACTGTTACCTTACGTTGCCCCTTTAGGGCTCACTTGAATTATTGATCAGGAACTTCCTGAATTTTTAAAGAGAGTTG
ATCAGTAAGAGCAACAAATGAACTTAGTAGGAGTCTTCAATAGGCTGAAAAATCTCCTTGTTTTCTAGATAATCTG
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Area Opaca
Area Pellucida
 
1-3
stage 3
Germ Cells/PGCs
Primitive Streak
primitive streak / germ wall margin
4-6
stage 6
Germinal Crescent
Headfold
Neural Plate/Tube
Paraxial Mesoderm
germinal crescent (germ cells?) / head fold / paraxial mesoderm (weak) / neural plate (weak)
7-9
stage 9
Neural Plate/Tube
neural plate (weak)
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.50870

Mouse

EmageMGI:2144404
EurexpressMGI:2144404
MGI GXDMGI:2144404

Frog

Xenbase1007412

Fruit Fly

BDGPFBgn0032671

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-060929-636
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