Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

KDM4A
lysine demethylase 4A

Gene

Official Symbol	KDM4A
Official Full Name	lysine demethylase 4A
CGNC ID	7658
also known as	JMJD2A, lysine-specific demethylase 4A\|jumonji domain containing 2A\|lysine (K)-specific demethylase 4A
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI

Sequence Information

Genomic
RNA	XM_422410
Polypeptide	XP_422410

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	35744			FBgn0033233
Human	9682	ENSG00000066135		MIM:609764
Mouse	230674	ENSMUSG00000033326	All phenotypic alleles (1):Targeted, other(1)	MGI:2446210
Xenopus	100135350			1010380
Zebrafish	334347	ENSDARG00000019103	ZDB-GENE-030131-6279, ZDB-GENE-110609-4	ZFIN:ZDB-GENE-030131-6279, ZFIN:ZDB-GENE-110609-4

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	424571
Ensembl Gene	ENSGALG00000010074
KEGG	gga:424571

Entry 1

GEISHA Id	KDM4A.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5'-TGTGGAGAATGAGAGCGGC-3'
Reverse cDNA Template Primer	5'-TAGCCATGCCCACACGATC3'	cDNA Template Length	899
Complete cDNA Template Probe	show TGTGGAGAATGAGAGCGGCATAACCATTGAAGGAGTGAATACTCCTTACCTCTATTTTGGCATGTGGAAAACTTCGTTT GCTTGGCATACTGAGGACATGGATCTCTACAGTATTAATTACCTGCATTTTGGGGAGCCTAAGTCATGGTACTCTATCC CTCCAGAGCATGGCAAGCGACTGGAGAGACTTGCCAAAGGATTCTTTCCGGGAAGCGCCCAGAGCTGCGAAGCGTTTCT CCGTCACAAGATGACCTTGATCTCTCCATCAATTCTGAAGAAATATGGCATCCCATTTGATAAGGTGACGCAGGAGGCA GGAGAGTTCATGATAACTTTTCCTTATAGTTATCATGCTGGCTTTAATCATGGATTTAACTGTGCTGAATCCACCAACT TTGCCACTCTTCGGTGGATTGAGTATGGGAAGCAGTCTGTACTGTGCTCGTGTCGGAAGGACATGGTGAAGATCTCCAT GGATGTGTTTGTGAGGAAGTACCAGCCAGACCGTTACAAGCTTTGGAAAGCTGGGAAGGATGTGACTGTCATTGACCAT GCTCTTCCAACACCAGAAGCAGCTGAGTTCCTTAAAGGGGATCTCATGCAAAAGGTCAAGAGTGGGAGGCAATATGCTG AGGATATGGAAACAGGAGAAGCATGTAAAGAGGAAGTGGACGGGGATGAGACAAAAAGTGTGCCCAAGCATCGCATAGG AACAAAAAGGCACAGAGTGTGCCTGGAAGTACCTCAGGAAGTGAGTGAGAGTGAGGCCTTCCCCAAAGAGGAGCTGAGC TCTATGCAGGATGAAGAAGATGCTGCAGAACCCTGTGAGAGAGCTACGGGAGAAGTTACGCAGCAGAGTGAACAGGGGC ACAAGGTTCCAGATCGTGTGGGCATGGCTA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Neural Plate/Tube
Unlabeled

7-12

stage 8

stage 9

Area Opaca
Forebrain
Hindbrain
Midbrain
Neural Plate/Tube

13-18

stage 13

stage 17

Forebrain
Foregut
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites

19-24

stage 19

stage 22

Ear/Otic Placode
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Lung
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somites
Spinal Ganglia and Nerves
Wing Mesenchyme

25-26

stage 25

stage 26

Foregut
Head Mesenchyme
Leg Mesenchyme
Lung
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 2

GEISHA Id	JmjD2A.Strobl-Mazzulla.2010	Data Source	Publication
Complete cDNA Template Probe	show GCGGCGGCCTGCGGGAGTCACCGGGCGCGGAGTGCGAAGGGATACGGCGGCGTGGCGGAGAGCCAGTGGGAGGGCGGAA GAGGCGAAGAAGCGGGACGCGGAGCTGACCGGCGGCCCGGCACCATGGCCTCGGAGCTGGAGAGCCTCAACCCCAGCGC GCGCATCATGACCTTCCGTCCCACCATGGAGCAGTTCCGGGACTTCAGCCGCTACATCGCTTACGTGGAGGCGCAGGGA GCGCACCGCGCCGGGCTGGCCAAGATCGTGCCCCCCAAGGAGTGGAAGCCGCGGAAGTGCTACGACGACATTGATGAGC TGGTGATCCCCGCACCCATCCAGCAGGTGGTGACCGGGCAGTCCGGGCTCTTCACGCAGTACAACATCCAGAAGAAGGC CATGACGGTGCGCGAGTTCCGCCGGATCGCCAACAGCGACAAGTACTGCACACCCCGCTACACAGACTTCGAAGACCTT GAACGAAAGTACTGGAAGAACCTTACGTTCAATGCCCCCATCTATGGTGCTGATGTTAATGGCACGCTTTATGACAAGC ACGTGGATGCGTGGAATATTGGCAGATTGAACACGATCCTGGATGTTGTGGAGAATGAGAGCGGCATAACCATTGAAGG AGTGAATACTCCTTACCTCTATTTTGGCATGTGGAAAACTTCATTTGCTTGGCATACTGAGGACATGGATCTCTACAGT ATTAATTACCTGCATTTTGGGGAGCCTAAGTCATGGTACTCTATCCCTCCAGAGCATGGCAAGCGACTGGAGAGACTTG CCAAAGGATTCTTTCCGGGAAGCGCCCAGAGCTGCGAAGCGTTTCTCCGTCACAAGATGACCTTGATCTCTCCATCAAT TCTGAAGAAATATGGCATCCCATTTGATAAGGTGACGCAGGAGGCAGGAGAGTTCATGATAACTTTTCCTTATAGTTAT CATGCTGGCTTTAATCATGGATTTAACTGTGCTGAATCCACCAACTTTGCCACTCTTCGGTGGATTGAGTATGGGAAGC AGTCTGTACTGTGCTCGTGTCGGAAGGACATGGTGAAGATCTCCATGGATGTGTTTGTGAGGAAGTACCAGCCAGACCG TTACAAGCTTTGGAAAGCTGGGAAGGATGTGACTGTCATTGACCATGCTCTTCCAACACCAGAAGCAGCTGAGTTCCTT AAAGGGGATCTCATGCAAAAGGTCAAGAGTGGGAGGCAATATGCTGAGGATATGGAAACAGGAGAAGCATGTAAAGAGG AAGTGGACGGGGATGAGACAAAAAGTGTGCCCAAGCATCGCATAGGAACAAAAAGGCACAGAGTGTGCCTGGAAGTACC TCAGGAAGTGAGTGAGAGTGAGGCCTTCCCCAAAGAGGAGCTGAGCTCTATGCAGGACGAAGAAGATGCTGCAGAACCC TGCGAGAGAGCTACGGGAGAAGTTACGCAGCAGAGTGAACAGGGGCACAAGGTTCCAGATCGTGTGGGCATGGCTAAAT CTGAAGAACTGAAAGTGGTGAAGCTTGAGGAGGAAGAAGAGGAAGAGCAAGAGGCCGCCGTGTTGGATCTTTCCATTTC GCATGCTTCAAATTCTGCTTCAGTTTTGCCAACCTCAAAGCAGAGAGCACCTTCCAGTGTTCAGCCCAGCTCACCAGCA TATTCTGGGTCTTCAGACTCTGAGTCAACTGATCTGTTGCCAAAAAGAACTCTACCTGGGCCAGCTGGGGTGCTTACAG TCCATAGCTATGCTAGAGGGGACGCCAGCGGATCTGACAATGAAACTTCAGGAAAGAAAGCCAGTGCTACAGGCAGCGT GAATGAACAAGAACTGGCAGAGGTAACAAAGGAGTACATACAATCAATGAAGGAAAGTAAGAAGTCCAAGGGTCGTCGC CAGCCATTGAGTAAGCTCCCACGCCACCACCCACTCTTGGTTAAAGACTGCATTAGTGATGATGAGGCATCAGAGCAAC TAACTCCTGAAGAAGAAGCTGAGGAGACAGAAGCTTGGGCCAAGCCACTTAGCCAGCTCTGGCAGAATCGACCACCAAA TTTTGAGGCTGAAAAAGAGTATAATCGGACCATGGCTCAGCAGTCTCCTTACTGTGCTGTTTGCATGCTCTTCCAGACG TATCAGGCAGAGTGTGGAGGCAGCAGTCAGAACTCTGGAGGAACTCCGGGTGCCGCGGATGGGAAGATCCGAACCAAGC CCCTGATTCCTGAAATGTGCTTTACTACAACTGGCTGCAGCACTGATCTCAATCTTTCAACCCCTTACTTAGAGGAAGA TGGAACCAGCGTACTCATCACCTGCAGGAACTGCCAAGTCTGTGTTCATGCAAGTTGTTACGGTGTATCCCCTGACAAG GCCACCGAAGACTGGATGTGCTCCAGGTGTACAGAAAATGCCTTAGAAGAGGACTGCTGTTTGTGTTCATTACGAGGAG GAGCACTGCAGAGAGCCAACGATGACAAATGGGTTCACGTCATGTGTGCTGTAGGTGTACTGGAAGCAAAATTTGTGAA CATTGCAGAACGCAGCCCTGTGGATGTCAGCAAGATCCCCCTGCAACGCTTCAGACTGAAATGCATCTTCTGCAAAAAA CGAAGGAAGAGAATCGCAGGTTGCTGTGTACAGTGCTCCCATGGTCGGTGTCCCACGTCCTTCCATGTCAGCTGTGCCC AAGCAGCAGGAGTTATGATGCAGCCTGATGACTGGCCATTTGTTGTCTTCATTACCTGCTTCAGGCATAAGATCCCATC TCAGGCAGAGCGAGCTAAGGCTGCACTCCAAGATCTGTCACCTGGGCAGATAGTCATCAGCAAGCACAAGAATGGTCGC TTCTATCAATGTGAAGTGGTCAGCCTCGCAAAAGAGACTTTCTACGAGGTCAACTTTGATGATGGTTCCTTCAGTGATA ACCTGTATCCAGAGGACATTGTGAGTCGAGACTGTCTTCAGTTGGGTCCACCAGCTGAAGGTGAAGTTGTGCAGGTCAG ATGGACAGATGGACAGGTTTACGGAGCCAAGTTCGTTGCATCACATGCCATCCAGATGTACCAGGTGGAATTTGAGGAT GGGTCACAGCTGATGGTGAAAAGGGATGATGTGTACACTTTGGAAGAGGAGCTTCCTAAGAGAGTCAAGTCAAGGCTGT CAATAGCTTCAGATATGCGCTTCACAGAGATCTTCGCAGAGAAGGAGGTCAGGCAAGAGAGGAAGAGACAAAGAGTGAT CAATTCACGCTACCGGGAAGATTACATTGAACCTGCCTTGTACCGGGCCATCATGGAGTAAGCACTGCCTGTGGCAGAG GAAGAAGATGCCCACCTCCCCCTAGGATTTAAACGCTCCAGTACAACAGGCCATATTTGGATGCTTCCAAATCCAGGGT TTTTTTTGTTTTGTTTTGTTTTTTAAAAGAAGTTATAAAGCTGATGCTCTGCAGTAGCTGAAAGGCAGCTGTTGGATAG TGAAACAGATCCCATTTGCTGAAGCTGTTGCCTGCGGCCTCCTGGTCTGAAGTTGGGTCTTTACTGAATAAGCCAGCTT GGGAGGGTGCTGCTTTCATCTCGTTGAGCCATCTTGCTTTTCTTTTAAAGACTATTTTGACAGGTGGAAAACTCTTCTG GGAGTTGTAGCCAGGAATCTCGGCAGCTGCAGAATAGCAAAAAGTTTGTTTTAATCGAATAATGTTCCTGATTTTGAGA GTCTCCCTGGTGGCTACACCTGGGCTTGAGCAGGCAGTATTACTGGTGCTTGATATTGAACCTCTTTTTATATTTATAT CCTTTTTTTTTTGTTGTTGGTTTTTTTTTTTGTAAGCAGCTTCAGACTCTTTGTTTCTCAGCACCTTCTTTCTGATGGT TGAGCTGTAGGCTGTTCAGATCCAAGCAGACAGGAGGTGCTCGTGTGAACAGGTGAAATGTGAAACTGAACCTATTGGA CAGATTATTTAACCATTTAATATTTTTGTTCCAATGCTCGTTTTGATTTAATTACTCTTAACTACATGTGCCTCAGTAT AAAAAAAAAAAAAGAAAAAGAGAAAGAAAATCTGTCTGGAGCCCTGCACAGTGCAGCCTTCTAACCAGATTAAGCATTT ACCTCCCAATTGGTATTCAGCACCCAAGAGTTTCTTCTGAGTTTCTTCCCACTCCAACTAATGCAATAATGAACAAAGG GATGGAGTTCTAACTCTTCCCCTTTGAAATCCAAGCATCACAGTATTGAGTATGACAAGGCAGCGGCACCTGAAGGAGT GCTGCACCTCTTCTGTGGCAGCACTGCCCTTTGTGTAGCCCCAAGACGTTGGGTTTGTGACAGATCAAGCATGCACTGA ACTGTATTACTGAGGAGCTGTGCAGTGCTCTTCTCAAGGAGGAGTGCTGCCACATTACTGTCTAGCAAGGGTTACCACA GCGTGTTTATAAAGCCTAAGTTGGGCACGTCTCAGTTGTGTTGGTGAGTACTTGCTACCTCAGCAGTAGGAACGTGAAT AAAGCTGGGTGGTAAGTGCACCTTGAAGGTGTGCCAGCTTGCTCCGAGCAATCTAAGCATTAACACGCCACACAGGAGC CATGTAAATATTTGTTCCTTTCCCATTCTGTAGGAAAGGGATTTGGGGCTGTGGAGCAGATAGGCCACCTTCCTTTTTG CATAGGATGACGGGATGACTTTTCTGCTGAAGAAAAATACAGTGACGTTCTCCAGAAGTAGCTCAAGAGGAGAATTTTC TAGTGAAACAGACCTAATGCATCCCTGCTTCTATAGGGACATAGCAGTGTGTCTGCAAAAACTGGGTTTGTAACTTTTT TTTCCTTTTCTTACATAGGAACGCTATAAACCAAACTGTTCTGAAATCCTGGTGCGTCAGTCTGTGATTAGCAATAAAA TGTAGTCTTGTGTAGTGATACAGCTCTTGACCAGAAAAGAAATAAACTACAACTTTTATAAGGAAAATC
Citation	Strobl-Mazzulla PH, Sauka-Spengler T, Bronner-Fraser M. Histone demethylase JmjD2A regulates neural crest specification. Dev Cell. 2010 Sep 14;19(3):460-8.
Copyright	Copyright © 2010 Elsevier Inc. All rights reserved.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 1

4-6

stage 4

stage 5

stage 6

Epiblast
Neural Plate/Tube

7-10

stage 7

stage 8

stage 10

Epiblast
Neural Crest
Neural Plate/Tube

maybe E'

Entry 3

GEISHA Id	KDM4A.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TTCAATTGGTATTCAGCACCCAAGAGTTTCTTCTGAGTTTCTTCCCACTCCAACTAATGCAATAATGAACAAAGGGACG GAGTTCTAACTCTTCCCCTTTGAAATCCAAGCATCACAGTATTGAGTATGACAAGGCAGCGGCACCTGAAGGAGTGCTG TACCTCTTCTGTGGCAGCACTGCCCTTTGTGTAGCCCCAAGACGTTGGGTTTGTGACAGATCAAGCATGCACTGAACTG TATTACTGAGGAGCTGTGCAGTGCTCTTCTCAAGGAGGAGTGCTGCCACATTACTGTCTAGCAAGGGTTACCACAGCGT GTTTATAAAGCCTAAGTTGGGCACGTCTCAGTTGTGTTGGTGAGTACTTGCTACCTCAGCAGTAGGAACGTGAATAAAG CTGGGTGGTAAGTGCACCTTGAAGGTGTGCCAGCTTGCTCCGAGCAATCTAAGCATTAACACGCCACACAGGAGCCATG TAAATATTTGTTCCTTTCCCATTCTGTAGGAACAGGGATTTGGGGCTGTGGAGCAGATAGGCCACCTTCCTTTTTGCAT AGGATGACGGGATGACTTTTCTGCTGAAGAAAAATACAGTGACGTTCTCCAGAAGTAGCTCAAGAGGAGAATTTTCTAG TGAAACAGACCTAATGCATCCCTGCTTCTATAGGGACATAGCAGTGTGTCTGCAAAAACTGGGTTCGTAACTTTTTTTT CCTTTTCTTACATAAGGAACGCTATAAACCAAACTGTTCTGAAATCCTGGTGCGTCCGGTCTGTGATTAGCACTACCAA TGTAGTCTTGTGGTAGTGATACAGGCTCTTGACCAGACACAGAAATAAACTACAACTTTTATAAGGGAAACAACCACAA AACCGGCAAA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.