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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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KLF5
Kruppel like factor 5

Gene

Official Symbol	KLF5
Official Full Name	Kruppel like factor 5
CGNC ID	12707
also known as	Krueppel-like factor 5\|Kruppel-like factor 5 (intestinal), Krueppel-like factor 5, Transcription factor BTEB2, BTE-binding protein 2, Intestinal-enriched krueppel-like factor, Colon krueppel-like factor, Basic transcription element-binding protein 2, GC box-binding protein 2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_417013
Polypeptide	XP_417013
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.7954

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	688	ENSG00000102554		MIM:602903
Mouse	12224	ENSMUSG00000005148	All phenotypic alleles (7):Targeted, knock-out(2) Targeted, other(4) Gene trapped(1)	MGI:1338056
Xenopus	100489339, 735138			490586
Zebrafish	100006043	ENSDARG00000015506	ZDB-GENE-080424-4, ZDB-GENE-090312-167	ZFIN:ZDB-GENE-080424-4, ZFIN:ZDB-GENE-090312-167

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418818
Ensembl Gene
KEGG	gga:418818

Entry 1

GEISHA Id	ChEST429a18	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show TCGACATGCCCAGTGCGGCTCCTCAGGCGGCCGTCATGGACTCCCTTAGCAGTGTCTCCATGCCGTCGGCCATGTCGGG CCTCAACACCCTCTCCCCGGCTGTCCCACAGACTGCAATGAAACAGTTCCAGGGCATTCCCCCATGCTCCTACACGATG CCAAACCAGTTCCTTCAGCAGCAGGCCACCTACTTCCCCCCTTCACCCCCCAGCTCAGAGCCTGGCAGTCCAGACAGAC AAGCAGAGATGCTACAGAATTTAACCCCTCCTCCATCGTACGCTGCCACTATAGCTTCCAAGCTGGCAATTCACAACCC GAATTTACCTGCAACTCTGCCAATAACTCCCCAGAACATACAGCCAGTCAGATACAACAGGAGAAGTAACCCAGATTTG GAGAAAAGACGCATCCACTACTGTGACTACCCCGGCTGCACAAAAGTGTATACTAAGTCTTCTCACTTAAAAGCGCACC TGAGAACTCACACGGGTGAAAAACCATACAAGTGCACGTGGGAGGGCTGCGACTGGCGATTTGCGCGCTCGGATGAATT AACGCGCCATTACAGGAAGCACACCGGGGCTAAACCCTTCCAGTGCGCCGTGTGCAACCGCAGCTTCTCCCGCTCCGAT CACCTGGCTCTGCACATGAAGAGGCATCAGAACTGAAAGCCAGAGTTGTTGCCGAGGCTGTTCTGTATCTATGCAATTT CCTAATGACTCTCAACCTACAACTAAAATTAGTTTAATTTTTTGAGGATGGATTATCCATTTAAAAGAAATCTCGAAAC TGGAAAATGTATATTTTGTATATTTATGCAGAAAAAGGGAAGACACTGTATCACAATACAGAGTGTTCAAGTCATTTGT TTGCT

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Opaca
Epiblast
Primitive Streak

4-6

stage 4

stage 5

stage 6

Area Opaca
Area Pellucida
Early Mesoderm
Epiblast
Headfold
Hensen's Node
Primitive Streak

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

Amnion
Area Opaca
Early Mesoderm
Epiblast
Extraembryonic
Forebrain
Head Mesenchyme
Primitive Streak
Surface Ectoderm
Tail
Trunk Mesenchyme
Yolk Sack or Stalk

anterior neuropore
nuc

13-18

stage 14

stage 17

stage 18

Amnion
Surface Ectoderm

19-24

stage 20

stage 22

stage 23

Amnion
Somites
Surface Ectoderm

stage 25

Amnion
Surface Ectoderm

head

Entry 2

GEISHA Id	KLF5.Antin.2010	Data Source	Publication
Complete cDNA Template Probe	show TCGACATGCCCAGTGCGGCTCCTCAGGCGGCCGTCATGGACTCCCTTAGCAGTGTCTCCATGCCGTCGGCCATGTCGGG CCTCAACACCCTCTCCCCGGCTGTCCCACAGACTGCAATGAAACAGTTCCAGGGCATTCCCCCATGCTCCTACACGATG CCAAACCAGTTCCTTCAGCAGCAGGCCACCTACTTCCCCCCTTCGCCCCCCAGCTCAGAGCCTGGCAGTCCAGACAGAC AAGCAGAGATGCTACAGAATTTAACCCCTCCTCCATCGTACGCTGCCACTATAGCTTCCAAGCTGGCAATTCACAACCC GAATTTACCTGCAACTCTGCCAATAACTCCCCAGAACATACAGCCAGTCAGATACAACAGGAGAAGTAACCCAGATTTG GAGAAAAGACGCATCCACTACTGTGACTACCCCGGCTGCACAAAAGTGTATACTAAGTCTTCTCACTTAAAAGCGCACC TGAGAACTCACACGGGTGAAAAACCATACAAGTGCACGTGGGAGGGCTGCGACTGGCGATTTGCGCGCTCGGATGAATT AACGCGCCATTACAGGAAGCACACCGGGGCTAAACCCTTCCAGTGCGCCGTGTGCAACCGCAGCTTCTCCCGCTCCGAT CACCTGGCTCTGCACATGAAGAGGCATCAGAACTGAAAGCCAGAGTTGTTGCCGAGGCTGTTCTGTATCTATGCAATTT CCCTAATTGACTCTTCAACCTACAACTAAAAATTAGTTTACTTCTCTTGAGGATGGATTATCCATTTTACAACGAAATC TCGAAAACTGCAACCATGTCTATTCTGGGTCTACTTTATGCCGCACCACAGGGACGACTCTGTTTCCCAATACCCGAGT GTTCCCGTCATTTGTGTGCTCCCCTGGCTGTATAATGGCTTAGTCAGCAGGTTTCACCTCTTACCAGTTTTTTGTCCTG CCCATGGCGCGTTCCCATCTTTTTCTCC
Citation	Antin PB, Pier M, Sesepasara T, Yatskievych TA, Darnell DK. Embryonic Expression of the Chicken Krüppel-like (KLF) Transcription Factor Gene Family. Dev Dyn. 2010 Jun;239(6):1879-87.
Copyright	Copyright © 2010 John Wiley & Sons, Inc. All Rights Reserved.
Comments	Probes were prepared using the entire cDNA insert in each EST clone. KLF 5 was made using clone ChEST429a18, which is represented in genbank by BU262693.1.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Epiblast

7-12

stage 8

stage 9

stage 10

stage 11

Dermomyotome
Lateral Plate Mesoderm
Somatic Mesoderm
Surface Ectoderm

13-18

stage 14

Dermomyotome
Extraembryonic
Surface Ectoderm

19-23

stage 23

Allantois
Amnion
Myotome
Pharyngeal Arches and Clefts
Surface Ectoderm

Entry 3

GEISHA Id	KLF5.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show AGACACCCGTCGCCAGGTACAGGCGGAGGCATTGACGACGCCCGAGTGGATGCGCGGCCGGGCCGGGGCTCGTGGCGAG TGAGAGCCGAGCAGCCGCCGCCCAGCCCAGCGCAGCCGCCCGCGGGCAGAGCCCAGCGCCGGGGCGGGCAGCCCGCCCG TGCCGCACCGCAGCGCCCTGCCCATGGCCACCCGGGTGCTGACCATGAGCGCCCGCCTGGCTCCCATGCCCGAGGAGCC GGTGTTCGCGCAGCTCAAGCCCGTGCTGGGGGCCAGGGAAGCGCCCGTCTTCCCCGGGGAGGACCTGAAACAGCAGCCG CCGCCGCAACCGCAACAGCAGCACCCGGGGAGCGGCGGAGGGGGCGGCGGCGCGGCCCTGCCGGGCGAGGAGATGGTGC AGACAAGGTGTGAAATGGAGAAATATCTGGCACCGCAGCTTCCGCCCGTCCCAGTCATCTCTGAGCATAAGAAGTACAG AAGAGACAGTGCCTCAGTCGTAGACCAGTTCTTCACCGACAGCGAAGGCTTGCCTTACAGCATCAACATGAACGTCTTC CTCCCTGATATCAGCCACCTGAGAACCGGCCTGTACAAATCCCAGCGGCCCTGTGTCCCCCACATCAAGACCGAGCCCG TCACCATCTTCAGTCACCAGAGTGAAACCGCTGCCCCCGCCCCTGCCCCTACCCAGGCCCTCCCTGAGTTCACCAGCAT TTTCAGCTCTCACCAGACCCCCGATGTGAACAACATTTTCATCAAGCAGGAGCTCCCGACCCCTGACGTCCACCTCTCT GTCACGCCCCAGCAGGGCCAGCTTTACCAGCTTCTGAGCTCGCCGGACCTCGACATGCCCAGTGCGGCTCCTCAGGCGG CCGTCATGGACTCCCTTAGCAGTGTCTCCATGCCGTCGGCCATGTCGGGCCTCAACACCCTCTCCCCGGCTGTCCCACA GACTGCAATGAAACAGTTCCAGGGCATTCCCCCATGCTCCTACACAATGCCAAACCAGTTTCTTCAGCAGCAGGCCACC TACTTCCCCCCTTCGCCCCCCAGCTCAGAGCCTGGCAGTCCAGACAGACAAGCAGAGATGCTACAGAATTTAACCCCTC CTCCATCGTACGCTGCCACTATAGCTTCCAAGCTGGCAATTCACAACCCAAATTTACCTGCAACTCTGCCAATAACTCC TCAGAACATACAGCCAGTCAGATACAACAGGAGAAGTAACCCAGATTTGGAGAAAAGACGCATCCACTACTGTGACTAC CCCGGCTGCACAAAAGTGTATACTAAGTCTTCTCACTTAAAAGCGCACCTGAGAACTCACACGGGTGAAAAACCGTACA AGTGCACGTGGGAGGGCTGCGACTGGCGATTTGCGCGCTCGGATGAATTAACGCGCCATTACAGGAAGCACACCGGGGC TAAACCCTTCCAGTGCGCCGTGTGCAACCGCAGCTTCTCCCGCTCCGATCACCTGGCTCTGCACATGAAGAGGCATCAG AACTGAAAGCCAGAGTTGTTGCCGAGGCTGTTCTGTATCTATGCAATTTCCTAATGACTCTCAACCTACAACTAAAATT AGTTTAATTTTTTGAGGATGGATTATCCATTTAAAAGAAATCTCGAAACTGGAAAATGTATATTTTGTATATTTATGCA GAAAAAGGGAAGACACTGTATCACAATACCAGAGTGTTCAAGTCATTTGTTTGCTCACATGGTGTATATGGCTTTAGTC AGCAGGTTTCATCTCTTTACAAGTATTATGTCTTGACACATGGCAGCGTTACACATACTTTTTTTCCTCTCTAGGTGTT TTGACCAAAGCACTGTCATTATTGTGACAATGTTTAGTAAAAAAATTAATGAGAGACTGCAGATGAATGGACACAGTGG AAAAGCCATGCATTGTAATCTGTCAGGGTTTTACTGAACTTGTTTAGTACTTGTGCTTTTTTTTAAATGTTAAGTCGTT CTGTGGAGATAAAACACGTAGAAAAATACATAAACAGCCATAGAACAAAACATTTTGTTCTGTATGTTGCATGTTTGCT ATGACAAAGATTTTGTAAATATGCAAATCAGCTTTTTAGGGTTAAAACAAAAGTTTTCTAAGAATTATCTGGGAAAAAA AAAAAAAAAACAGTTGTTCTACATTTGTTAACACGGCACATTTACGCAAAAAGTTACTTAAATACCTCTCAAAACAGTA CCAACTTAGCTTCATTTCTCTTAAGAGAAATGAGCAAGGCATTCAAATGTTTTGTACCTGTTAACTCAGATGGTGTGCA CTGAATATTCAAAGCAGGATTTGGTTTTCAAATTGCTTAAAAGGGTAAAACATTTAAAGCGAACTGGAAAGTAAATGTT GGAAGCTTAAAGGGGGGGATAGTTACAGTATACAGAATGTTAAACCTCTTAGTATAAGCTAAACTTAGTATCACTTTAA AAAGAAGGATTTAGGATGCAATTTTCATATACGGACATGTTAAGCTGGTTCAGCACCAGTATGATCTGTTTTCATGTGG ATATTGCATGTAATTTACTAGAAGGTAAAGGATACAGTAATTTTATTTAAAATTACAGTGCAGTTTAGTTAATCCACTG TTCAAATGGATACACACGGGAGAAAATTAACTGCTGACAAAGGTAGCTGAAACTCCACTGAAGTCAGGTGAAGTGGTGC CCTTTTATGCTAACAGTGACTTTGATCCACAGTGTTCAGCCTTGAAACATTAAGTGAAGGGCCAAAGATGAGGTTAGAC CATGCAGGATTTGGCCAGGCAACAGGAGAAAACGAAACAAACCAAGTAAAAGTGTCTGGAGTTCGCAAGCTGTAATATT AAGCTGTCAACCAAAGGGTAGAATAAACAATCAAAATACCAAAAAAGGGTCTCACAGGAAAATCTAGCGTTGTTAAAAC TGTTGTTTGTCTTTATTTATTTGTGGTATACAATAGACTTTTTTTTAAGACAATTTTACATATACTTGATAAATTATAG TTTTGTTTGTTATAGTTAGAAATGTTGCTCTTAATGTAAATAGTTGACAAATGATGTAAATAATTTTGTAAGGCTTCAA ATGTTTATACATGGAAACACATGCATAAATTGGTTGCTGTTTTGCTTCTTTTGCCTCCCCCCTACCTTATTTTTGTATT GTGGTATTTCCTATGCAAATGTTGGAGCAAACAGCTGTATAGTTGTAGAATGTTTTGAGAGAGAATGAAATGGTTTATA TATAAAAGACTTTTTTTTTTTTTGCAAAATAAAACAAAGTGCCTAATGTG
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_417013).