GEISHA - A Chicken Embryo Gene Expression Database
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LBX1
ladybird homeobox 1

Gene
Official SymbolLBX1
Official Full Nameladybird homeobox 1
CGNC ID61460
also known astranscription factor LBX1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001178143
PolypeptideNP_001171614
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.47475
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene100431103
Ensembl Gene
KEGGgga:100431103

Entry 1

GEISHA IdLBX1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCAAACCCCTCACCCCTTTCAG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGCCTTCATCTCCTCCAGGTCGcDNA Template Length477
Forward cDNA Template Probeshow
CAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTTACGCGCTGTGCGGGACG
GCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGCGCTGCTCTCGCAGACGT
CGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTGCTGCAGGCGGCCGAAGG
AAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGACGGCCTTCACCAACCAC
CAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGACCAGATCGCCCAGCAGC
TGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Primitive Streak
 
4-6
stage 4
stage 5
Area Pellucida
Epiblast
Primitive Streak
 
7-12
stage 7
stage 9
stage 10
stage 11
Anterior Intestinal Portal
Extraembryonic Mesoderm
Forebrain
Headfold
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
 
13-18
stage 14
stage 14
stage 15
stage 16
Ear/Otic Placode
Forebrain
Heart
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Renal
Sclerotome
Somatic Mesoderm
Somites
 
19-24
stage 20
stage 23
Head Mesenchyme
Leg Mesenchyme
Somatic Mesoderm
Spinal Cord
Wing Mesenchyme
 
25
stage 25
Head Mesenchyme
Leg Mesenchyme
Somatic Mesoderm
Spinal Cord
Wing Mesenchyme
 

Entry 2

GEISHA IdLbx1.Noden.2006Data SourcePublication
Complete cDNA Template Probeshow
TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG
CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT
ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC
GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG
CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA
CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA
CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC
GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG
CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA
CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
CitationNoden DM, Francis-West P. The differentiation and morphogenesis of craniofacial muscles. Dev Dyn. 2006 May;235(5):1194-218. Review.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001178143).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
Face Mesenchyme
Myotome
Somites
 

Entry 3

GEISHA IdLBX1.Bothe.2007Data SourcePublication
Complete cDNA Template Probeshow
TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG
CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT
ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC
GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG
CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA
CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA
CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC
GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG
CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA
CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
CitationBothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001178143).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Dermatome
Myotome
Dermomyotome

Entry 4

GEISHA IdLbx1.Bonafede.2006Data SourcePublication
Complete cDNA Template Probeshow
TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG
CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT
ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC
GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG
CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA
CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA
CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC
GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG
CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA
CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
CitationBonafede A, Köhler T, Rodriguez-Niedenführ M, Brand-Saberi B. BMPs restrict the position of premuscle masses in the limb buds by influencing Tcf4 expression. Dev Biol. 2006 Nov 15;299(2):330-44. Epub 2006 Jun 15.
CopyrightCopyright © 2006 Elsevier B.V. All rights reserved.
CommentsThe following probes were used: Sf/Hgf (Thery et al., 1995), qPax3, MyoD and Myf5, Lbx1, Bmp2 and Bmp4, Tcf4. Probes used in this study were kindly provided by Claudio Stern, Gabrielle Kardon, Christophe Marcelle, Bruce M. Paterson, Susanne Dietrich and Paul Brickell. Thus insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_001178143).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
stage 24
stage 24
stage 24
stage 24
stage 24
Wing
Wing Muscles
premuscle masses

Entry 5

GEISHA IdLBX1.Kanamoto.2006Data SourcePublication
Complete cDNA Template Probeshow
TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG
CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT
ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC
GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG
CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA
CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA
CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC
GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG
CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA
CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
CitationKanamoto T, Terada K, Yoshikawa H, Furukawa T. Cloning and expression pattern of lbx3, a novel chick homeobox gene. Gene Expr Patterns. 2006 Mar;6(3):241-6. Epub 2005 Dec 27.
CopyrightReprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001178143).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
stage 18
stage 18
Dermomyotome
Leg Mesenchyme
Somites
Wing Mesenchyme
 
19-24
stage 19
stage 20
stage 22
stage 23
stage 24
stage 24
Face Mesenchyme
Limb Buds
Neural Plate/Tube
Somites
Spinal Cord
Wing Mesenchyme
 
25-28
stage 25
stage 25
stage 28
Hindbrain
Limb Buds
Neural Plate/Tube
Spinal Cord
Figure 4 includes HH stages 16-28 and compares Lbx1 expression to Lbx3, MyoD, and Myogenin.

Entry 6

GEISHA IdLbx1.Christ.2002Data SourcePublication
Complete cDNA Template Probeshow
TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG
CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT
ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC
GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG
CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA
CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA
CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC
GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG
CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA
CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
CitationChrist B, Brand-Saberi B. Limb muscle development. Int J Dev Biol. 2002;46(7):905-14.
Copyright"Reprinted from Int. J. Dev. Biol., 46, Christ B, Brand-Saberi B, Limb muscle development, 905-14, Copyright (2002), with permission from Copyright © 2002 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001178143).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 21
Leg Muscles
Wing Muscles
 
31-44
stage 44
Leg Muscles
Somites
Wing Muscles
Comparison to other genes

Entry 7

GEISHA IdLBX1.Wilm.2004Data SourcePublication
Complete cDNA Template Probeshow
TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG
CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT
ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC
GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG
CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA
CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA
CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC
GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG
CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA
CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
CitationWilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89.
CopyrightCopyright © 2004 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001178143).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-35
stage 35
Dermomyotome
Somites
 

Entry 8

GEISHA IdLBX1.Alvarez.2003Data SourcePublication
Complete cDNA Template Probeshow
TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG
CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT
ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC
GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG
CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA
CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA
CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC
GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG
CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA
CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
CitationAlvares LE, Schubert FR, Thorpe C, Mootoosamy RC, Cheng L, Parkyn G, Lumsden A, Dietrich S. Intrinsic, Hox-dependent cues determine the fate of skeletal muscle precursors. Dev Cell. 2003 Sep;5(3):379-90.
CopyrightCopyright © 2012 Elsevier B.V. All rights reserved.
CommentsDegenerate primers CAGVHMYCGMACRDCYTTYAC and YTBYKSHRYTTDGYVCGNGC directed against the first and third helix of homeobox genes were used for the first amplification, followed by a second round using the nested primer pair ATGGGCCCBCAGMTYKAVRDRYTGGA and TAGCGGCCGCDGYVCGSCGRTTYTGRAACC. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001178143.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
Head Mesenchyme
Somites
Wing Mesenchyme
dark blue staining is LBX1 expression, dorsolateral view , expression of lbx1 at occipital , neck , and limb level somites
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.47475

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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