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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LIN28A
lin-28 homolog A

Gene

Official Symbol	LIN28A
Official Full Name	lin-28 homolog A
CGNC ID	228
also known as	LIN28, protein lin-28 homolog A\|Lin-28.1\|lin-28A
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001031774
Polypeptide	NP_001026944

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	38639			FBgn0035626
Human	79727	ENSG00000131914		MIM:611043
Mouse	83557	ENSMUSG00000050966	All phenotypic alleles (1):Targeted, knock-out(1)	MGI:1890546
Xenopus	548523, 387262			491383
Zebrafish	799825, 394066	ENSDARG00000004328, ENSDARG00000016999	ZDB-GENE-040426-747	ZFIN:ZDB-GENE-040426-747

Gene Ontology

Molecular Function	DNA binding, RNA binding, zinc ion binding
Biological Process	RNA 3'-end processing, miRNA catabolic process, pre-miRNA processing, more...
Cellular Component	cytoplasmic mRNA processing body, cytoplasmic stress granule, nucleus

Links to other databases

Entrez Gene	428206
Ensembl Gene	ENSGALG00000000388
KEGG	gga:428206

Entry 1

GEISHA Id	LIN28A.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CTCTGAAACACAGGGCTGGAAG
Reverse cDNA Template Primer	TCACTTGGCATTGGCTTTGG	cDNA Template Length	275
Complete cDNA Template Probe	show `CTCTGAAACACAGGGCTGGAAGTGCTCTTCTTTACCACACAGAGTAGCACATGGCTCAGTGGAGCTCAGCCTTCTGCGT GGATCAAACCCACGTGGGACAAACACTGCTGCTCCTCCTGCTCACGCTGCACCAGCACCCTGGGCTAAGCCTCCCATGG GTACAGGAAAACAGGGACCTGGGGTGGCAGTGGCTGCCCTCATCCCTCCCCAGCCTTGCCTTTATTTATTGGCCCCAGT GACAGCCCTTCTTCTGAGGCCAGATGCCCCGATTGTGG`

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Pellucida
Epiblast

4-6

stage 4

stage 5

stage 6

Area Pellucida
Epiblast
Headfold

7-12

stage 9

stage 10

stage 11

stage 12

Anterior Intestinal Portal
Forebrain
Head Mesenchyme
Hensen's Node
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Spinal Cord

Entry 2

GEISHA Id	LIN28.Yokoyama.2008	Data Source	Publication
Complete cDNA Template Probe	show `AGAGCAAGAGCCTGCAGAAACGCAGATCAAAAGGAGATCGATGCTACAACTGCGGCGGGCTGGACCACCATGCCAAAGA GTGCAAGCTGCCTCCGCAGCCCAAGAAATGCCACTTCTGCCAGAGCATCAGCCACATGGTCGCCAACTGCCCTGCCAAA GCTCAGCAGTCCCCCAGCTCTCAGGGAAAGCCTGCCTACTTCCGCGAGAAGGAGGACATGCACAGCTCGGCCCTGCTCC CCGAAACCCGGGAATGATGGCAGGCGGCAGGGAGGGCTAACACCAGGATGGAGAGGCTTTGGCAAGGCAAACGGGGAGG GATGAGGGCAGAACCTTATTCTCTTTAAAGCCCGGCTTTAATTGGGATGGCTCCAAAAATAGGAGGGGGAGCATCCAAC ACACCTCTCCCGGACAAAAAACAAATAAATAAATAAATTGGTTCATCTTTCTCCAGGAAGCTAGGAGGAGGAGCAGGGA GGCACAGCTC`
Citation	Yokoyama S, Hashimoto M, Shimizu H, Ueno-Kudoh H, Uchibe K, Kimura I, Asahara H. Dynamic gene expression of Lin-28 during embryonic development in mouse and chicken. Gene Expr Patterns. 2008 Feb;8(3):155-60.
Copyright	http://www.elsevier.com/copyright
Comments	The cDNA template used to generate the probe was obtained by PCR as described by the authors

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 15

stage 17

Ear/Otic Placode
Limb Buds
Mesencephalon
Pharyngeal Arches and Clefts
Retina
Rhombomeres
Somatic Mesoderm
Ubiquitous

19-24

stage 20

stage 21

stage 24

Central Nervous System
Ear/Otic Placode
Eye
Head Mesenchyme
Heart
Limb Buds
Midbrain
Pharyngeal Arches and Clefts
Somatic Mesoderm
Unlabeled

Entry 3

GEISHA Id	LIN28A.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TTTTTTTTTTTTTTTTTTGGGCTGATACCCTCAAAGCTGGCCGAGGAGGAGGAGGGAGGAGGAGGCGGTAACAGCCACA ACTCGGAATTTGCAAGCGAGTGTCGGGATGGGGTCTGTTTCCAACCAGCAGTTTGCAGGTGCGAAGCCAGGCGAGGAGC CGTCTGGAGATTCACCCAAAGCCGAGAATGAGTCCCAACCCCTGCATGGCTCTGGCATCTGTAAGTGGTTCAACGTCCG CATGGGCTTCGGCTTCCTCTCCATGACCGCCAAGGGCGGTGCGATGCTGGACTCACCCGTCGATGTCTTCGTGCACCAG AGCAAGCTGCACATGGAGGGCTTCCGCAGCTTGAAGGAGGGCGAAGCCGTTGAATTCACCTTCAAGAAATCCTCCAAAG GTTTGGAATCCATCCGGGTGACCGGTCCAGGGGGCGTCTTCTGCATTGGCAGCGAGAGGAGACCTAAGAGCAAGAGCCT GCAGAAACGCAGATCAAAAGGAGATCGATGCTACAACTGCGGCGGGCTGGACCACCATGCCAAAGAGTGCAAGCTGCCT CCGCAGCCCAAGAAATGCCACTTCTGCCAGAGCATCAGCCACATGGTCGCCAACTGCCCTGCCAAAGCTCAGCAGTCCC CCAGCTCTCAGGGAAAGCCTGCCTACTTCCGCGAGAAGGAGGACATGCACAGCTCGGCCCTGCTCCCCGAAACCCGGGA ATGATGGCAGGCGGCAGGGAGGGCTAACACCAGGATGGAGAGGCTTTGGCAAGGCAAACGGGGAGGGATGAGGGCAGAA CCTTATTCTCTTTAAAGCCCGGCTTTAATTGGGATGGCTCCAAAAATAGGAGGGGGAGCATCCAACACACCTCTCCCGG ACAAAAAACAAATAAATAAATAAATTGGTTCATCTTTCTCCAGGAAGCTAGGAGGAGGAGCAGGGAGGCACAGCTCAGG GAGGCTCTGGCGGCTCCTTGCTCTTCGCCCCGTGGCCGGAGCAGGGAGAGACGAGGGTGGCAGGGCTGGGGGGAATGCC CGCAGGCCGGCCCCATGGCCCCCACAGCTCCTCGTCTCTGAAACACAGGGCTGGAAGTGCTCTTCTTTACCACACAGAG TAGCACATGGCTCAGTGGAGCTCAGCCTTCTGCGTGGATCAAACCCACGTGGGACAAACACTGCTGCTCCTCCTGCTCA CGCTGCACCAGAACCCTGGGCTAAGCCTCCCATGGGTACAGGAAAACAGGGACCTGGGGTGGCAGTGGCTGCCCTCATC CCTCCCCAGCCTTGCCTTTATTTATTGGCCCCAGTGACAGCCCTTCTTCTGGGGCCGGATGCCCCGATTGTGCCAAAGC CAATGCCAAGTGAAAGCTGCACTAGGATGTGCGTGAATGACGTATCTTTGGGTTTGTTTGTTGTCTTTGGTTTGTTTTT TTGGTTTTTTTTTTTTTTTTGCTTTTTATATAAATATTCAGTTTTTGTATTTTTGTATATTTTAATCTTTAAAAAAA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001031774 ).