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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LMO4
LIM domain only 4

Gene

Official Symbol	LMO4
Official Full Name	LIM domain only 4
CGNC ID	48949
also known as	LIM domain transcription factor LMO4
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic	Genbank
RNA	NM_204112
Polypeptide	NP_989443
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.2310

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	34361			FBgn0032196
Human	8543	ENSG00000143013		MIM:603129
Mouse	16911	ENSMUSG00000028266	All phenotypic alleles (13):Targeted, knock-out(3) Targeted, other(10)	MGI:109360
Xenopus	448304, 447751			971938
Zebrafish	324849, 114412	ENSDARG00000054749, ENSDARG00000013853	ZDB-GENE-030131-3570, ZDB-GENE-010702-1	ZFIN:ZDB-GENE-030131-3570, ZFIN:ZDB-GENE-010702-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	373901
Ensembl Gene
KEGG	gga:373901

Entry 1

GEISHA Id	pgf2n.pk006.p16	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GGCGAGGAAACCTCCGCGGTGCCCCCGAGCGGCGCTGCCCGGCCCCGCAGACCACCGAGGGGAAGCAGCAGGCCATGGT GAACCCCGGCGGCAGCGCGCAGCCGCCCCCGGTGACGGCGGGCTCCCTCTCGTGGAAGAGGTGCGCCGGCTGCGGGGGG AAGATCGCCGACCGCTTCCTGCTCTACGCCATGGACAGCTACTGGCACAGCCGCTGCCTCAAGTGCTCCTGCTGCCAGG CCCAGCTGGGGGACATCGGCACGTCCTGCTACACCAAGAGCGGCATGATCCTCTGCAGAAACGACTATATCAGGTTATT TGGAAATAGTGGTGCTTGCAGTGCCTGCGGACAGTCCATTCCTGCTAGTGAGCTGGTCATGAGGGCACAGGGCAATGTC TATCATCTGAAGTGTTTTACATGCTCTACCTGCCGGAATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGCA GTTTATTTTGTGAACATGATAGACCTACAGCTCTCATCAATGGCCATTTGAATTCACTTCAGAGTAACCCACTACTGCC

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 8

Head Mesenchyme
Hensen's Node
Neural Plate/Tube
Primitive Streak
Unlabeled

13-18

stage 15

stage 16

stage 17

Cranial PNS
Ear/Otic Placcode
Forebrain
Foregut
Head Mesenchyme
Placcode
Spinal Ganglia and Nerves

19-22

stage 19

stage 21

stage 22

Allantois
Blood Vessels
Cranial Nerve
Cranial PNS
Face Mesenchyme
Foregut
Heart
Notochord
Outflow Tract
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Ganglia and Nerves
Splanchnic Mesoderm
Valves

Entry 2

GEISHA Id	LMO4.Abellan.2009	Data Source	Publication
Complete cDNA Template Probe	show CCCGCAGACCACCGAGGGGAAGCAGCAGGCCATGGTGAACCCCGGCGGCAGCGCGCAGCCGCCCCCGGTGACGGCGGGC TCCCTCTCGTGGAAGAGGTGCGCCGGCTGCGGGGGGAAGATCGCCGACCGCTTCCTGCTCTACGCCATGGACAGCTACT GGCACAGCCGCTGCCTCAAGTGCTCCTGCTGCCAGGCCCAGCTGGGGGACATCGGCACGTCCTGCTACACCAAGAGCGG CATGATCCTCTGCAGAAACGACTATATCAGGTTATTTGGAAATAGTGGTGCTTGCAGTGCCTGCGGACAGTCCATTCCT GCTAGTGAGCTGGTCATGAGGGCACAGGGCAATGTCTATCATCTGAAGTGTTTTACATGCTCTACCTGCCGGAATCGCC TGGTCCCGGGAGATCGGTTTCACTACATCAATGGCAGTTTATTTTGTGAACATGATAGACCTACAGCTCTCATCAATGG CCATTTGAATTCACTTCAGAGTAACCCACTACTGCCAGACCAGAAGGTCTGCTAAAAGGTCAGAGTATTGCAGAATGCG TGCCTTCATCTCAAATTTTGTTCATCACAGATGGATCCCATGTCTCCAAGTAGACAAGTCACCTTTGTAGCTAGCATCA GTGCCAGCTCCATACCATTGCACCTTCTTTATTCTTGATTGCCCTTCCCACATTTATTGGTGTATTAAAATGACTGAAT ATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGACTGTAGAGAAAATGAAAAAAG
Citation	Abellán A, Legaz I, Vernier B, Rétaux S, Medina L. Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes. J Comp Neurol. 2009 Sep 20;516(3):166-86.
Copyright	Copyright © 2009 Wiley-Liss, Inc.
Comments	The sequence below was obtained from NCBI (acc # AF532926.1 - Showing 771 bp region from base 307 to 1078) using the information provided in the publication.

Stage

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Location (click to highlight)

Comments (click to highlight)

31-44

stage 35

stage 40

stage 42

stage 44

Telencephalon

Posthatch animals (PO)
frontal section
oblique horizontal section
oblique horizontal section

Entry 3

GEISHA Id	LMO4.Ferronha.2013	Data Source	Publication
Complete cDNA Template Probe	show CGGCGGGCCGCGGCCGCTCGGCTCCGCGCCGCGGGAACTCGGCCGCCGCCGGAGCCCGGCGGAGGGGCGGAGGTGGGGG CGGGGGGAGCGGCGCGAAGTGCGGCCGCGGCGCCAAACTTGCGGCGGCGGCGGCGGCCCCTGCGCGTGCGGCTCCGCGG GGCCGGAGGGCGGCGGGCGCCCATCAGCGCCGTCTCCGCGTTTGTCCGGCCCGGACCGGGGGCTGCCGAAGGGCGGGCG GGCGGCGGGCGCCGCGCTCGGTTCGCGGCGAGGAAACCTCCGCGGTGCCCCCGAGCGGCGCTGCCCGGCCCCGCAGACC ACCGAGGGGAAGCAGCAGGCCATGGTGAACCCCGGCGGCAGCGCGCAGCCGCCCCCGGTGACGGCGGGCTCCCTCTCGT GGAAGAGGTGCGCCGGCTGCGGGGGGAAGATCGCCGACCGCTTCCTGCTCTACGCCATGGACAGCTACTGGCACAGCCG CTGCCTCAAGTGCTCCTGCTGCCAGGCCCAGCTGGGGGACATCGGCACGTCCTGCTACACCAAGAGCGGCATGATCCTC TGCAGAAACGACTATATCAGGTTATTTGGAAATAGTGGTGCTTGCAGTGCCTGCGGACAGTCCATTCCTGCTAGTGAGC TGGTCATGAGGGCACAGGGCAATGTCTATCATCTGAAGTGTTTTACATGCTCTACCTGCCGGAATCGCCTGGTCCCGGG AGATCGGTTTCACTACATCAATGGCAGTTTATTTTGTGAACATGATAGACCTACAGCTCTCATCAATGGCCATTTGAAT TCACTTCAGAGTAACCCACTACTGCCAGACCAGAAGGTCTGCTAAAAGGTCAGAGTATTGCAGAATGCGTGCCTTCATC TCAAATTTTGTTCATCACAGATGGATCCCATGTCTCCAAGTAGACAAGTCACCTTTGTAGCTAGCATCAGTGCCAGCTC CATACCATTGCACCTTCTTTATTCTTGATTGCCCTTCCCACATTTATTGGTGTATTAAAATGACTGAATATGAACATTA AGGACTCCATGAACCTGGGCTAATGGGAGACTGTAGAGAAAATGAAAAAAGCTCGTGC
Citation	Ferronha T, Rabadán MA, Gil-Guiñon E, Le Dréau G, de Torres C, Martí E. LMO4 is an essential cofactor in the Snail2-mediated epithelial-to-mesenchymal transition of neuroblastoma and neural crest cells. J Neurosci. 2013 Feb 13;33(7):2773-83.
Copyright	Copyright @ 2013 by the Society of Neuroscience
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. #NM_204112.1).