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Human Disease Gene Search
LMX1B The human orthologue of this gene is associated
Gene Summary Expression Transcript Levels Other Species Expression JBrowse Gene Official Symbol LMX1B Official Full Name LIM homeobox transcription factor 1 beta CGNC ID 621 also known as LMX, LMX1, LIM/homeobox protein LMX-1.2|LIM homeobox protein|LIM/homeobox protein 1|homeobox protein LMX-1|homeodomain protein (lmx), LIM/homeobox protein LMX-1.2, LIM-homeobox protein 1, LMX, Homeobox protein LMX-1 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Links to other databases
Entry 1 GEISHA Id ChEST264j14 Data Source GEISHA ISH Analysis Forward cDNA Template Probe show CAACAGGAGACCTAAACGACCAAGGACAATACTTACTACACAGCAGAGACGAGCATTCAAAGCATCCTTTGAAGTGTCT
Entry 2 GEISHA Id Lmx1.Prin.2004 Data Source Publication Complete cDNA Template Probe show CCCCATATGGACATCGCCTCGGGCCCCGAGTCCTTGGAGAGGTGCTTCCCGCGCGGCCCGACGGACTGCGCCAAGATGC
Citation Prin F, Logan C, D'Souza D, Ensini M, Dhouailly D. Dorsal versus ventral scales and the dorsoventral patterning of chick foot epidermis. Dev Dyn. 2004 Mar;229(3):564-78. Copyright Wiley-Liss, Inc. 2004
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-30 stage 27
stage 27
stage 30
stage 30
Limb Buds 31-36 stage 36
Limb Buds
Entry 3 GEISHA Id Lmx1.Zuzarte-Luis.2007 Data Source Publication Complete cDNA Template Probe show CCCCATATGGACATCGCCTCGGGCCCCGAGTCCTTGGAGAGGTGCTTCCCGCGCGGCCCGACGGACTGCGCCAAGATGC
Citation Zuzarte-Luis V, Montero JA, Kawakami Y, Izpisua-Belmonte JC, Hurle JM. Lysosomal cathepsins in embryonic programmed cell death. Dev Biol. 2007 Jan 1;301(1):205-17. Epub 2006 Aug 12. Copyright 2006 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205358).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 31-35 stage 35
Limb Buds
Entry 4 GEISHA Id LMX1.Holmes.2003 Data Source Publication Complete cDNA Template Probe show CCCCATATGGACATCGCCTCGGGCCCCGAGTCCTTGGAGAGGTGCTTCCCGCGCGGCCCGACGGACTGCGCCAAGATGC
Citation Holmes G, Crooijmans R, Groenen M, Niswander L (2003). ALC (adjacent to LMX1 in chick) is a novel dorsal limb mesenchyme marker. Gene Expr Patterns. 2003 Dec;3(6):735-41. Copyright Copyright © 2003 Elsevier B.V. All rights reserved. Comments The authors said: The chick LMX1 plasmid was from Juan Carlos Izpisua-Belmonte. As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205358).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 16
stage 17
Limb Buds 19-24 stage 22
Limb Buds 31-44 stage 44
Limb Buds
Entry 5 GEISHA Id LMX1B.Agarwala.2005 Data Source Publication Complete cDNA Template Probe show CCCCATATGGACATCGCCTCGGGCCCCGAGTCCTTGGAGAGGTGCTTCCCGCGCGGCCCGACGGACTGCGCCAAGATGC
Citation Agarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21. Copyright Copyright © 2005 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205358).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-26 stage 26
Isthmus/MHB Midbrain
Entry 6 GEISHA Id LMX1.Tomas.2011 Data Source Publication Complete cDNA Template Probe show TTCCTGGAGAGGTGCTTCCCGCGCGGCCGACGGACTGCGCCAAGATGCTGGACGGCATCAAGATGGAAGATCACCCGCT
Citation Tomás AR, Certal AC, Rodríguez-León J.
FLRT3 as a key player on chick limb development.
Dev Biol. 2011 Jul 15;355(2):324-33.
Comments Probe for lmx-1 was obtained from chicken EST ChEST100c17.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-14 stage 14
stage 14
stage 14
stage 14
Wing AER Wing Mesenchyme
Entry 7 GEISHA Id LMX1B.Abello.2010 Data Source Publication Complete cDNA Template Probe show CCCCATATGGACATCGCCTCGGGCCCCGAGTCCTTGGAGAGGTGCTTCCCGCGCGGCCCGACGGACTGCGCCAAGATGC
Citation Abelló G, Khatri S, Radosevic M, Scotting PJ, Giráldez F, Alsina B., Independent regulation of Sox3 and Lmx1b by FGF and BMP signaling influences the neurogenic and non-neurogenic domains in the chick otic placode. Dev Biol. 2010 Mar 1;339(1):166-78. Epub 2010 Jan 4. Copyright Copyright © 2009 Elsevier Inc. All rights reserved. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205358.1 ).
Entry 8 GEISHA Id LMX1B.Adams.2000 Data Source Publication Complete cDNA Template Probe show CCCCATATGGACATCGCCTCGGGCCCCGAGTCCTTGGAGAGGTGCTTCCCGCGCGGCCCGACGGACTGCGCCAAGATGC
Citation Adams KA, Maida JM, Golden JA, Riddle RD. The transcription factor Lmx1b maintains Wnt1 expression within the isthmic organizer. Development. 2000 May;127(9):1857-67. Copyright Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Comments As insufficient information is provided in the publication to verify the exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (acc # NM_205358.1).
Entry 9 GEISHA Id LMX1.Fisher.2008 Data Source Publication Complete cDNA Template Probe show ATGCTGGACGGCATCAAGATGGAAGATCACCCGCTGCGCTCGGGTCCGGCCACGCTCGGAGTGTTACTGGGGTCGGAGT
Citation Fisher ME, Clelland AK, Bain A, Baldock RA, Murphy P, Downie H, Tickle C, Davidson DR, Buckland RA. Integrating technologies for comparing 3D gene expression domains in the developing chick limb. Dev Biol. 2008 May 1;317(1):13-23. Epub 2008 Feb 7. Copyright Copyright © 2008 Elsevier Inc. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #U41823.1 ).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-22 stage 22
stage 22
stage 22
stage 22
stage 22
Eye Limb Buds Neural Plate/Tube
Entry 10 GEISHA Id LMX1.Altabef.2002 Data Source Publication Complete cDNA Template Probe show ATGCTGGACGGCATCAAGATGGAAGATCACCCGCTGCGCTCGGGTCCGGCCACGCTCGGAGTGTTACTGGGGTCGGAGT
Citation Altabef M, Tickle C. Initiation of dorso-ventral axis during chick limb development. Mech Dev. 2002 Aug;116(1-2):19-27. Copyright Copyright © 2012 Elsevier B.V. All rights reserved. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #U41823.1)
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-17 stage 17
stage 17
stage 17
Leg Wing
Entry 11 GEISHA Id LMX1B.Havis.2012 Data Source Publication Complete cDNA Template Probe show CCCCATATGGACATCGCCTCGGGCCCCGAGTCCTTGGAGAGGTGCTTCCCGCGCGGCCCGACGGACTGCGCCAAGATGC
Citation Havis E, Coumailleau P, Bonnet A, Bismuth K, Bonnin MA, Johnson R, Fan CM, Relaix F, Shi DL, Duprez D. Sim2 prevents entry into the myogenic program by repressing MyoD transcription during limb embryonic myogenesis. Development. 2012 Jun;139(11):1910-20. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_205358.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-29 stage 29
stage 29
Limb Buds
Entry 12 GEISHA Id LMX1.Yuan.1999 Data Source Publication Complete cDNA Template Probe show CCCCATATGGACATCGCCTCGGGCCCCGAGTCCTTGGAGAGGTGCTTCCCGCGCGGCCCGACGGACTGCGCCAAGATGC
Citation Yuan S, Schoenwolf GC. The spatial and temporal pattern of C-Lmx1 expression in the neuroectoderm during chick neurulation. Mech Dev. 1999 Nov;88(2):243-7 Copyright 1999 Elsevier Science Ireland Ltd. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_205358.1).
Entry 13 GEISHA Id Lmx-1.Stark.2000 Data Source Publication Complete cDNA Template Probe show CCCCATATGGACATCGCCTCGGGCCCCGAGTCCTTGGAGAGGTGCTTCCCGCGCGGCCCGACGGACTGCGCCAAGATGC
Citation Stark MR, Rao MS, Schoenwolf GC, Yang G, Smith D, Mauch TJ. Frizzled-4 expression during chick kidney development. Mech Dev. 2000 Nov;98(1-2):121-5. Copyright Copyright © 2000 Elsevier Science Ireland Ltd. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205358).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 17
stage 17
Limb Buds Mesonephros 19-24 stage 24
stage 24
Limb Buds Renal 31-44 stage 40
stage 40
stage 44
stage 44
Renal
Entry 14 GEISHA Id LMX1B.Trevers.2023 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show ATGGCACAGGGGCTGCGGAGCGCCGGGAAGCCCCGCCGCCGCCCGGCCCCACCGCTCCGCCCGGCCCGGCCCCGGGAGG
Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205358).
Data from NCBI Unigene EST ProfileGga.758
Mouse Frog Fruit Fly Zebra Finch Zebrafish
