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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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MEOX1
mesenchyme homeobox 1

Gene

Official Symbol	MEOX1
Official Full Name	mesenchyme homeobox 1
CGNC ID	810
also known as	GGMOXR1, homeobox protein MOX-1\|Mox-1 related protein\|mesenchyme homeo box 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204765
Polypeptide	NP_990096

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4222	ENSG00000005102		MIM:600147
Mouse	17285	ENSMUSG00000001493	All phenotypic alleles (5):Targeted, knock-out(1) Targeted, other(1) Gene trapped(2) Transgenic(1)	MGI:103220
Xenopus
Zebrafish	436723	ENSDARG00000007891	ZDB-GENE-040718-149	ZFIN:ZDB-GENE-040718-149

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395533
Ensembl Gene	ENSGALG00000001191
KEGG	gga:395533

Entry 1

GEISHA Id	Mox-1	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show ATCGGCCTTGGGACCCTCTTAGGGGCGATCGCCTCCTTCACCTATTCGGGACAATGAAGACCTTTAGAAGAGTTCCCCA ACTAACAAACCTCCAACCTCACAAACCCCCCAGCCAAAGTGTCGCTTAGGGAGGAAATCTGGGCTGTCAAATTTGGAAA CATTTTCCCCTCCGCTCCTCTCCTGCTCGAGGAACCCGAGTGACGAACGCGGGACGAGGATGGACCCCACCGGAGGCAG CTGCATGCGCAGCCCCCAACCCCCAGCCCCACTCTGGGGGTGCCTACGGGGCGCTGATGTCCCCACAGCCCCAGGGTTG GGTCACTGCCCCCCGACCCCTTTCTCCTTCCACCCCAAGGCGGATTTTGCTGCTTATTCTGAATTCTCAGCCTCCTGCT TGCTGAGCGCTGCCCACTGCGTCCCACCCGAGGAGCAACCGCCACCGTTCCGTCCCCATCCTGAGTGGCAGCAAACAGC AACAGAGGCCCGGAGACTGCTGAGCCCAGGGCTGGCGTTGGCCTCTGGGGATGCAGAGAGCCCCAACCTCGTGAGCACA GCAGTGGCTGTAAGTGAAGATTACAAAGTGCCGGTAAACAGCGGGATGGAGACGGAGAGAAAGGCATCCAAAAGGAAAA AGGAGCACTCAGAAAGCCAGCCCTCCAGCAGCAAGGCAGAAGGCAGCAGCAGGTCGCGGAAGGAGAGGACAGCGTTCAC CAAGGAGCAGCTGAGGGAGCTGGAGGCAGAATTTGCCCACCACAATTACCTGACAAGGCTCAGGAGATACGAGATCGCT GTGAACCTGGACCTCACCGAGAGACAGGTCAAAGTGTGGTTCCAGAATAGAAGGATGAAGTGGAAGCGCGTTAAGGGGG GGCAACCAGTGTCCCCTCCTGAGCCCGATGCAGAGGACGCCGACTCCACCACATCCCCCAGCTCCGAGTAGTGCCATAA AGAGATGCTTGGAGAGGGTGTGACACTGCAGAAGGACACTGCAGCTCCATAGGGTGGCCCTGTGGGGCACGGACTGAGA GGTGCGCAGTGCTGGAACTGGCGGAGGGAAATGGAAAGCACAAAATAAGCCAAAGGAGAGCAGGACTTTGAGCTTTGTG TGAATGGAACTGTCTTACTGCCATAGGGGTACCTTCACCAAAAGGAGAAAAAGAAAAAAGATAAAAACCACTGTATATA TAGCAGGAGTAATGCTGTTTAGGCTCCCAAATGCTCAGAAAGTATGAGTTATCAGTTAGAAAGGGACCAGAGGGTGATA ACACAGCTCTGTTCACCTCCAGCCTTTCCCTGGTCACTTCAGCTCATCCTTCACTTGGACTTGGGCTCTGAGAATCACT GAGGTTGGAATAGACCTCTCAGAACCCCAAGTCCAACCCCAACCCATCCCACCGTGCCCACTGACCATGTCTCTACGTG CCACATTCCCCACATGGGGAGGAACACCTCCAGGGATGGGAACACCCCACCCCCTGAGCAGCTGTGCCAATACCCGACC TCTCTTCCTGAGAACAAATTTCACCTCACATCCACCCTCAAAGCAGCCCTTACCAAACGGCCCCTGCATCATTTCCATC CTTCCACTCTGGTTTGCTTCCCTATGTGATCATCTCCACCTCTGAAGGTATCCGACTGATCCCAGGACACTTTAAAGCC AATTTCCAAGTTTAAAGAGTGCATAAAAGCAGCTTTCTAGCATAGGATGACCACAGCACCCAGACGTGAACGCTCCTTC CCTTGCACACTGGTCCTCTCAACCCATACCTGTAATATAGCTAATGATTACAGTTTAGGAAAGCATAGTGTCTGTTCCC ATATCTTCTGTCTTTTTGTTTAACGTTTTCTAATGCAACTTTATCATATTTTAAACAGAACTCTACACTGGCATGTCAT AGAATGGCTATTAAACACGACTTTTGGTATTCTCA
Comments	Images provided by Raymond Runyan

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 8

stage 9

Mesoderm, early
Paraxial Mesoderm
Somites

13-14

stage 14

Entry 2

GEISHA Id	Meox1.Reijntjes.2007	Data Source	Publication
Complete cDNA Template Probe	show CAGGGTTGGGTCACTGCCCCCCGACCCCTTTCTCCTTCCACCCCAAGGCGGATTTTGCTGCTTATTCTGAATTCTCAGC CTCCTGCTTGCTGAGCGCTGCCCACTGCGTCCCACCCGAGGAGCAGCCGCCACCGTTCCGTCCCCATCCTGAGTGGCAG CAAACAGCAACAGAGGCCCGGAGACTGCTGAGCCCAGGGCTGGCGTTGGCCTCTGGGGATGCAGAGAGCCCCAACCTCG TGAGCACAGCAGTGGCTGTAAGTGAAGATTACAAAGTGCCGGTAAACAGCGGGATGGAGACGGAGAGAAAGGCATCCAA AAGGAAACCAGGAGCACTCAGAAAGCCAGCCCTCCAGCAGCAAGGCAGAAGGCAGCAGCAGGTCGCGGAAGGAGAGGAC AGCGTTCACCAAGGAGCAGCTGAGGGAGCTGGAGGCAGAATTTGCCCACCACAATTACCTGACAAGGCTCAGGAGATAC GAGATCGCTGTGAACCTGGACCTCACCGAGAGACAGGTCAAAGTGTGGTTCCAGAATAGAAGGATGAAGTGGAAGCGCG TTAAGGGGGGGCAACCAGTGTCCCTCCTGAGCCCGATGCAGAGGGACGCCGACTCCAGCAGATCCCCCAAGCTCCGAGT AGTGCCATAAAGAGATGCTTGGGAGAGGGTGTGACACTTGCAGAAGGACACTGGCAGCTCCAT
Citation	Reijntjes S, Stricker S, Mankoo BS. A comparative analysis of Meox1 and Meox2 in the developing somites and limbs of the chick embryo. Int J Dev Biol.(2007); 51(8:753-9.
Copyright	Reprinted from Int. J. Dev. Biol., 51, Reijntjes S, Stricker S, Mankoo BS, A comparative analysis of Meox1 and Meox2 in the developing somites and limbs of the chick embryo, 753-9, Copyright © 2007 UBC Press, with permission. All rights reserved.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Early Mesoderm

7-12

stage 7

stage 8

stage 10

Early Mesoderm
Paraxial Mesoderm
Somites

13-18

stage 14

stage 16

Dermomyotome
Sclerotome
Somites

19-24

stage 20

stage 22

Dermomyotome
Eye
Face Mesenchyme
Leg
Leg Muscles
Pharyngeal Arches and Clefts
Somites
Tail

Lateral rectus muscle of the eye
Mandibular arch

25-30

stage 25

Dermomyotome
Eye
Leg Muscles
Limb Buds
Outflow Tract
Somites

Dorsal pre-muscle mass
Ventral pre-muscle mass

31-44

stage 44

Eye
Limb Buds
Somites

Fig. 1. All images for comparison.
Fig. 2. All images for comparison.
Fig. 3. All images for comparison.

Entry 3

GEISHA Id	MEOX1.Wilm.2004	Data Source	Publication
Complete cDNA Template Probe	show ATCGGCCTTGGGACCCTCTTAGGGGCGATCGCCTCCTTCACCTATTCGGGACAATGAAGACCTTTAGAAGAGTTCCCCA ACTAACAAACCTCCAACCTCACAAACCCCCCAGCCAAAGTGTCGCTTAGGGAGGAAATCTGGGCTGTCAAATTTGGAAA CATTTTCCCCTCCGCTCCTCTCCTGCTCGAGGAACCCGAGTGACGAACGCGGGACGAGGATGGACCCCACCGGAGGCAG CTGCATGCGCAGCCCCCAACCCCCAGCCCCACTCTGGGGGTGCCTACGGGGCGCTGATGTCCCCACAGCCCCAGGGTTG GGTCACTGCCCCCCGACCCCTTTCTCCTTCCACCCCAAGGCGGATTTTGCTGCTTATTCTGAATTCTCAGCCTCCTGCT TGCTGAGCGCTGCCCACTGCGTCCCACCCGAGGAGCAACCGCCACCGTTCCGTCCCCATCCTGAGTGGCAGCAAACAGC AACAGAGGCCCGGAGACTGCTGAGCCCAGGGCTGGCGTTGGCCTCTGGGGATGCAGAGAGCCCCAACCTCGTGAGCACA GCAGTGGCTGTAAGTGAAGATTACAAAGTGCCGGTAAACAGCGGGATGGAGACGGAGAGAAAGGCATCCAAAAGGAAAA AGGAGCACTCAGAAAGCCAGCCCTCCAGCAGCAAGGCAGAAGGCAGCAGCAGGTCGCGGAAGGAGAGGACAGCGTTCAC CAAGGAGCAGCTGAGGGAGCTGGAGGCAGAATTTGCCCACCACAATTACCTGACAAGGCTCAGGAGATACGAGATCGCT GTGAACCTGGACCTCACCGAGAGACAGGTCAAAGTGTGGTTCCAGAATAGAAGGATGAAGTGGAAGCGCGTTAAGGGGG GGCAACCAGTGTCCCCTCCTGAGCCCGATGCAGAGGACGCCGACTCCACCACATCCCCCAGCTCCGAGTAGTGCCATAA AGAGATGCTTGGAGAGGGTGTGACACTGCAGAAGGACACTGCAGCTCCATAGGGTGGCCCTGTGGGGCACGGACTGAGA GGTGCGCAGTGCTGGAACTGGCGGAGGGAAATGGAAAGCACAAAATAAGCCAAAGGAGAGCAGGACTTTGAGCTTTGTG TGAATGGAACTGTCTTACTGCCATAGGGGTACCTTCACCAAAAGGAGAAAAAGAAAAAAGATAAAAACCACTGTATATA TAGCAGGAGTAATGCTGTTTAGGCTCCCAAATGCTCAGAAAGTATGAGTTATCAGTTAGAAAGGGACCAGAGGGTGATA ACACAGCTCTGTTCACCTCCAGCCTTTCCCTGGTCACTTCAGCTCATCCTTCACTTGGACTTGGGCTCTGAGAATCACT GAGGTTGGAATAGACCTCTCAGAACCCCAAGTCCAACCCCAACCCATCCCACCGTGCCCACTGACCATGTCTCTACGTG CCACATTCCCCACATGGGGAGGAACACCTCCAGGGATGGGAACACCCCACCCCCTGAGCAGCTGTGCCAATACCCGACC TCTCTTCCTGAGAACAAATTTCACCTCACATCCACCCTCAAAGCAGCCCTTACCAAACGGCCCCTGCATCATTTCCATC CTTCCACTCTGGTTTGCTTCCCTATGTGATCATCTCCACCTCTGAAGGTATCCGACTGATCCCAGGACACTTTAAAGCC AATTTCCAAGTTTAAAGAGTGCATAAAAGCAGCTTTCTAGCATAGGATGACCACAGCACCCAGACGTGAACGCTCCTTC CCTTGCACACTGGTCCTCTCAACCCATACCTGTAATATAGCTAATGATTACAGTTTAGGAAAGCATAGTGTCTGTTCCC ATATCTTCTGTCTTTTTGTTTAACGTTTTCTAATGCAACTTTATCATATTTTAAACAGAACTCTACACTGGCATGTCAT AGAATGGCTATTAAACACGACTTTTGGTATTCTCA
Citation	Wilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89.
Copyright	Copyright © 2004 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204765).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-35

stage 35

Intermediate Mesoderm
Paraxial Mesoderm
Somites

Anterior Unsegmented Mesoderm

Entry 4

GEISHA Id	MEOX1.Paxton.2010	Data Source	Publication
Complete cDNA Template Probe	show GCTCCCAAATGCTCAGAAAGTATGAGTTATCAGTTAGAAAGGGACCAGAGGGTGATAACACAGCTCTGTTCACCTCCAG CCTTTCCCTGGTCACTTCAGCTCATCCTTCACTTGGACTTGGGCTCTGAGAATCACTGAGGTTGGAATAGACCTCTCAG AACCCCAAGTCCAACCCCAACCCATCCCACCGTGCCCACTGACCATGTCTCTACGTGCCACATTCCCCACATGGGGAGG AACACCTCCAGGGATGGGAACACCCCACCCCCTGAGCAGCTGTGCCAATACCCGACCTCTCTTCCTGAGAACAAATTTC ACCTCACATCCACCCTCAAAGCAGCCCTTACCAAACGGCCCCTGCATCATTTCCATCCTTCCACTCTGGTTTGCTTCCC TATGTGATCATCTCCACCTCTGAAGGTATCCGACTGATCCCAGGACACTTTAAAGCCAATTTCCAAGTTTAAAGAGTGC ATAAAAGCAGCTTTCTAGCATAGGATGACCACAGCACCCAGACGTGAACGCTCCTTCCCTTGCACACTGGTCCTCTCAA CCCAT
Citation	Paxton CN, Bleyl SB, Chapman SC, Schoenwolf GC. Identification of differentially expressed genes in early inner ear development. Gene Expr Patterns. 2010 Jan;10(1):31-43. Epub 2009 Nov 11.
Copyright	2009 Elsevier B.V. All rights reserved.
Comments	The cDNA template used to generate the probe was obtained by PCR as described 5-gctcccaaatgctcagaaag-3; 5-atgggttgagaggaccagtg-3

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Early Mesoderm

7-11

stage 7

stage 8

stage 11

Paraxial Mesoderm

Entry 5

GEISHA Id	MEOX1.Reijntjes.2010	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CAGGGTTGGGTCACTGCCCCCCGACCCCTTTCTCCTTCCACCCCAAGGCGGATTTTGCTGCTTATTCTGAATTCTCAGC CTCCTGCTTGCTGAGCGCTGCCCACTGCGTCCCACCCGAGGAGCAGCCGCCACCGTTCCGTCCCCATCCTGAGTGGCAG CAAACAGCAACAGAGGCCCGGAGACTGCTGAGCCCAGGGCTGGCGTTGGCCTCTGGGGATGCAGAGAGCCCCAACCTCG TGAGCACAGCAGTGGCTGTAAGTGAAGATTACAAAGTGCCGGTAAACAGCGGGATGGAGACGGAGAGAAAGGCATCCAA AAGGAAACCAGGAGCACTCAGAAAGCCAGCCCTCCAGCAGCAAGGCAGAAGGCAGCAGCAGGTCGCGGAAGGAGAGGAC AGCGTTCACCAAGGAGCAGCTGAGGGAGCTGGAGGCAGAATTTGCCCACCACAATTACCTGACAAGGCTCAGGAGATAC GAGATCGCTGTGAACCTGGACCTCACCGAGAGACAGGTCAAAGTGTGGTTCCAGAATAGAAGGATGAAGTGGAAGCGCG TTAAGGGGGGGCAACCAGTGTCCCTCCTGAGCCCGATGCAGAGGGACGCCGACTCCAGCAGATCCCCCAAGCTCCGAGT AGTGCCATAAAGAGATGCTTGGGAGAGGGTGTGACACTTGCAGAAGGACACTGGCAGCTCCAT
Citation	Reijntjes S, Francis-West P, Mankoo BS. Retinoic acid is both necessary for and inhibits myogenic commitment and differentiation in the chick limb. Int J Dev Biol. 2010;54(1):125-34
Copyright	© 2009 UBC Press
Comments	The sequence was obtained from NCBI (acc # BU266520) using the information provided in the publication as described in Reijntjes et al., 2010.