GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

MMP9
matrix metallopeptidase 9

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolMMP9
Official Full Namematrix metallopeptidase 9
CGNC ID49293
also known asmatrix metalloproteinase-9|75 kDa gelatinase|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)|matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204667
PolypeptideNP_989998
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.48727
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human4318ENSG00000100985MIM:603932MIM:120361
Mouse17395ENSMUSG00000017737All phenotypic alleles (6):Targeted, knock-out(6) MGI:97011
Xenopus448591, 379663876294
Zebrafish406397ENSDARG00000042816ZDB-GENE-040426-2132ZFIN:ZDB-GENE-040426-2132
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395387
Ensembl GeneENSGALG00000006992
KEGGgga:395387

Entry 1

GEISHA IdMMP9.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCGACCAGGACAAGAAATACG
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGAAGGGGGACACCAGTAAAGcDNA Template Length964
Forward cDNA Template Probeshow
AGTGTAGGGGGTAGCCCTTGTCCACTGTCTGGACCTTCACGTCCAGCCTCCAGTAGTGCTCCCCACTGAAGAGCAGCAC
TTTGCCACGTCCCCGCTGCAGGGCCCCCGTGATGCGCCCGGCCTCCTTCCCAATGCCCAACTTCTCAATCCTACGGGGA
CCCACTGCGTTCTTGCCGGAGAACACCCAGAACTGCCGTCCCGCGAAGAAGAAGACCCTCTTGGTGAGCACATCTTGGA
ACGCCGCGTCGATGACAGCCGGGAGGCCGGGCCAGGTGTCAGCGATAGAGAAGGCGCCCTGAGTGCCTGATTTCCAGAA
GGACGAGTGGGTCCAGTATTTCCCATTCTTGAAGAAGTGCAGCTCTCCATTGATCTCAGTGATGGCGTCGAAGTTCTTC
TCCATGCAGGCATCCCGGCTGGGGTCCACGGGGCTGGGCTCAGCTGTGGGCTCAGGTGTCTCCTCCTCCTCCTCCTCTG
TGGTGGAAGCACTGCCAGCTTCGGTGGGTATGGACTGGGGCTCCTCGGTGGGCAAAGGTGCCGGGGGGGTGGGCTCAGG
GCCAGAGCCACGACCATAGAGGTACTGGATGCCCTGGACATCATCCTCATGCAGCTGGAAGTCCTGGACGTAGCTGTAC
ATAGGGTACATCAATGCCTCGCGCACGCTGGAGTGGTCCAGCCCCAGTGAGTGCCCAAACTCGTGGGCAGCCACCAAGA
AGATGCTGTAACCTCTGTCTGGGCAGAAGCCCCACTTCTTGTCGGTGTCATAGTTGCTGGTGGTGGCACACCANAGCTT
CCCGTCCTGCCGGCCCTGGCTGGTGCACGCGCTGTANGACTGCCCCAGGAAGGTGAAGGGGAAGACACACGGGTCCCCC
TGGGAGTTGCCACCGATCACCGCCGTGTCTCGGTTGGGGCAAAAGCCGTATT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 7
stage 7
stage 9
stage 10
stage 10
stage 10
stage 10
stage 11
Anterior Intestinal Portal
Extraembryonic Mesoderm
Forebrain
Heart
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
 
13-18
stage 14
stage 14
stage 14
stage 15
stage 15
stage 15
stage 15
stage 16
Ear/Otic Placode
Eye
Forebrain
Gut
Hindbrain
Lateral Plate Mesoderm
Midbrain
Pancreas
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somites
Spinal Cord
 
19-22
stage 22
stage 22
Eye
Mesonephros
 

Entry 2

GEISHA IdMmp9.Shelton.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGCTCCTGGCCCCGCTCACCCTGGCACTGCTGGCTCTCTGCCGCGCCGCCCCACTGCACAGCAAGCCGCAGGCGGTCA
TCACCTTCCCAGGGGAGCTGCTCAGCGCCCCATCAGACGTGGAGCTGGCGGAGAACTACCTGCTGCGCTTCGGCTACAT
CCAGGAGGCAGAGGTGAGGAGGAGCAGCAAGCACGTGTCCCTGGCCAAAGCGCTGCGCAGGATGCAGAAGCAGCTGGGG
CTGGAGGAGACGGGGGAGCTGGACGCCAGCACCCTGGAGGCCATGCGAGCCCCCCGCTGTGGGGTGCCTGACGTGGGGG
GTTTCCTCACCTTCGAGGGGGAGCTCAAATGGGACCACATGGACCTCACGTACCGGGTGATGAACTACTCCCCCGACCT
GGACCGTGCCGTGATAGATGATGCCTTCCGGCGGGCATTCAAGGTGTGGAGTGATGTCACTCCCCTCACCTTCACCCAG
ATTTACAGCGGCGAGGCAGACATCATGATCATGTTCGGCAGCCAAGAGCATGGTGATGGGTACCCCTTCGACGGCAAGG
ATGGGCTCCTGGCCCACGCCTTTCCCCCCGGCAGTGGGATTCAGGGCGATGCCCACTTCGATGATGATGAGTTCTGGAC
TCTGGGAACCGGCTTAGAGGTGAAGACCCGCTATGGGAATGCCAACGGGGCCAGCTGCCACTTCCCCTTCATCTTTGAG
GGCCGCTCCTACTCCCGGTGCATCACGGAGGGCCGCACGGATGGGATGCTGTGGTGTGCCACCACCGCCAGCTACGACG
CCGACAAGACCTACGGCTTCTGCCCCAGCGAGCTGCTCTACACCAATGGTGGCAACAGCGATGGGTCTCCCTGCGTCTT
CCCCTTCATCTTCGATGGCGCCTCCTATGACACCTGCACCACAGATGGGCGCTCTGACGGCTATCGCTGGTGTGCCACC
ACGGCCAACTTCGACCAGGACAAGAAATACGGCTTCTGCCCCAACCGAGACACGGCGGCGATCGGTGGCAACTCCCAGG
GGGACCCGTGTGTCTTCCCCTTCACCTTCCTGGGGCAGTCCTACAGCGCGCGCACCAGCCAGGGCCGGCAGGACGGGAA
GCTCTGGTGTGCCACCACCAGCAACTATGACACCGACAAGAAGTGGGGCTTCTGCCCAGACAGAGGTTACAGCATCTTC
TTGGTGGCTGCCCACGAGTTTGGGCACTCACTGGGGCTGGACCACTCCAGCGTGCGCGAGGCATTGATGTACCCTATGT
ACAGCTACGTCCAGGACTTCCAGCTGCATGAGGATGATGTCCAGGGCATCCAGTACCTCTATGGTCGTGGCTCTGGCCC
TGAGCCCACCCCCCCGGCACCTTTGCCCACCGAGGAGCCCCAGTCCATACCCACCGAAGCTGGCAGTGCTTCCACCACA
GAGGAGGAGGAGGAGGAGACACCTGAGCCCACAGCTGAGCCCAGCCCCGTGGACCCCAGCCGGGATGCCTGCATGGAGA
AGAACTTCGACGCCATCACTGAGATCAATGGAGAGCTGCACTTCTTCAAGAATGGGAAATACTGGACCCACTCGTCCTT
CTGGAAATCAGGCACTCAGGGCGCCTTCTCTATCGCTGACACCTGGCCCGGCCTCCCGGCTGTCATCGACGCGGCGTTC
CAAGATGTGCTCACCAAGAGGGTCTTCTTCTTCGCGGGACGGCAGTTCTGGGTGTTCTCCGGCAAGAACGCAGTGGGCC
CCCGTAGGATTGAGAAGTTGGGCATTGGGAAGGAGGCCGGGCGCATCACGGGGGCCCTGCAGCGGGGACGTGGCAAAGT
GCTGCTCTTCAGTGGGGAGCACTACTGGAGGCTGGACGTGAAGGTCCAGACAGTGGACAAGGGCTACCCCCGTGACACT
GATGATGTCTTTACTGGTGTCCCCCTTGACGCACGTAACGTCTTCCTGTACCAAGACAAGTACCACTTCTGCCGGGACA
GCTTCTACTGGAGGATGACCCCACGTTACCAGGTGGACCGCGTGGGATACATCAGATACGACCTCCTGCAGTGCCCCCA
GCATTAGGGGCGGAGCAGCTGCTCTGGTGCCACGCTCCTGCCTGCTGCTCCAGCCGGTCCCCCTGCAGCCCAGGAGTGC
TGTGGGGCAGCCGTGGGGCAGCTGCGGGGTTGCCCCTGCCGTGCCAGGGCTTGCAGTCTCCCTGGCAGGATGGGGCGTG
TGCTCCCGGCCCCCACCAGGGGCTGCCCGTCTGGGGAGCGGCGACTCACGCCAGCTTTGCTGCCCGGAGACGTTTGCCC
GGCGCAAACTGCACACGGATTTGTAATGACTTTATCTTTTCCTGAGCCAGTAACGCTGGGTCGGCCTCGCGCGGGCAGG
GACACGGGGCTTTGTGCCTCCCCCGCCTCGCCGCCGGGTGATGCCATCCTTCACCTGCTCCTTTGTAATAAAAGCCGTC
CTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CitationShelton EL, Yutzey KE. Tbx20 regulation of endocardial cushion cell proliferation and extrcellular matrix gene epression. Dev Biol. 2007 Feb 1;302(1):267-80.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsThe chicken mmp9 sequence (GenBank accession number AF222690) was amplified from HH stage 30 heart cDNA using the primers 5′-GCTGCCACTTCCCCTTCATCTTTG-3′ and 5′-CGGGGGCCCACTGCGTTCTTG-3′
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 25
stage 25
Valves
 
31-34
stage 34
Valves
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.48727

Mouse

EmageMGI:97011
EurexpressMGI:97011
MGI GXDMGI:97011

Frog

Xenbase876294

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-2132
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona