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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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MMP9
matrix metallopeptidase 9

The human orthologue of this gene is associated
with the following human disease:

Metaphyseal anadysplasia 2

Gene

Official Symbol	MMP9
Official Full Name	matrix metallopeptidase 9
CGNC ID	49293
also known as	matrix metalloproteinase-9\|75 kDa gelatinase\|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)\|matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204667
Polypeptide	NP_989998
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.48727

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4318	ENSG00000100985	MIM:603932	MIM:120361
Mouse	17395	ENSMUSG00000017737	All phenotypic alleles (6):Targeted, knock-out(6)	MGI:97011
Xenopus	448591, 379663			876294
Zebrafish	406397	ENSDARG00000042816	ZDB-GENE-040426-2132	ZFIN:ZDB-GENE-040426-2132

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395387
Ensembl Gene	ENSGALG00000006992
KEGG	gga:395387

Entry 1

GEISHA Id	MMP9.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CGACCAGGACAAGAAATACG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGAAGGGGGACACCAGTAAAG	cDNA Template Length	964
Forward cDNA Template Probe	show AGTGTAGGGGGTAGCCCTTGTCCACTGTCTGGACCTTCACGTCCAGCCTCCAGTAGTGCTCCCCACTGAAGAGCAGCAC TTTGCCACGTCCCCGCTGCAGGGCCCCCGTGATGCGCCCGGCCTCCTTCCCAATGCCCAACTTCTCAATCCTACGGGGA CCCACTGCGTTCTTGCCGGAGAACACCCAGAACTGCCGTCCCGCGAAGAAGAAGACCCTCTTGGTGAGCACATCTTGGA ACGCCGCGTCGATGACAGCCGGGAGGCCGGGCCAGGTGTCAGCGATAGAGAAGGCGCCCTGAGTGCCTGATTTCCAGAA GGACGAGTGGGTCCAGTATTTCCCATTCTTGAAGAAGTGCAGCTCTCCATTGATCTCAGTGATGGCGTCGAAGTTCTTC TCCATGCAGGCATCCCGGCTGGGGTCCACGGGGCTGGGCTCAGCTGTGGGCTCAGGTGTCTCCTCCTCCTCCTCCTCTG TGGTGGAAGCACTGCCAGCTTCGGTGGGTATGGACTGGGGCTCCTCGGTGGGCAAAGGTGCCGGGGGGGTGGGCTCAGG GCCAGAGCCACGACCATAGAGGTACTGGATGCCCTGGACATCATCCTCATGCAGCTGGAAGTCCTGGACGTAGCTGTAC ATAGGGTACATCAATGCCTCGCGCACGCTGGAGTGGTCCAGCCCCAGTGAGTGCCCAAACTCGTGGGCAGCCACCAAGA AGATGCTGTAACCTCTGTCTGGGCAGAAGCCCCACTTCTTGTCGGTGTCATAGTTGCTGGTGGTGGCACACCANAGCTT CCCGTCCTGCCGGCCCTGGCTGGTGCACGCGCTGTANGACTGCCCCAGGAAGGTGAAGGGGAAGACACACGGGTCCCCC TGGGAGTTGCCACCGATCACCGCCGTGTCTCGGTTGGGGCAAAAGCCGTATT

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 9

stage 10

stage 11

Anterior Intestinal Portal
Extraembryonic Mesoderm
Forebrain
Heart
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm

13-18

stage 14

stage 15

stage 16

Ear/Otic Placode
Eye
Forebrain
Gut
Hindbrain
Lateral Plate Mesoderm
Midbrain
Pancreas
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somites
Spinal Cord

19-22

stage 22

Eye
Mesonephros

Entry 2

GEISHA Id	Mmp9.Shelton.2007	Data Source	Publication
Complete cDNA Template Probe	show ATGCTCCTGGCCCCGCTCACCCTGGCACTGCTGGCTCTCTGCCGCGCCGCCCCACTGCACAGCAAGCCGCAGGCGGTCA TCACCTTCCCAGGGGAGCTGCTCAGCGCCCCATCAGACGTGGAGCTGGCGGAGAACTACCTGCTGCGCTTCGGCTACAT CCAGGAGGCAGAGGTGAGGAGGAGCAGCAAGCACGTGTCCCTGGCCAAAGCGCTGCGCAGGATGCAGAAGCAGCTGGGG CTGGAGGAGACGGGGGAGCTGGACGCCAGCACCCTGGAGGCCATGCGAGCCCCCCGCTGTGGGGTGCCTGACGTGGGGG GTTTCCTCACCTTCGAGGGGGAGCTCAAATGGGACCACATGGACCTCACGTACCGGGTGATGAACTACTCCCCCGACCT GGACCGTGCCGTGATAGATGATGCCTTCCGGCGGGCATTCAAGGTGTGGAGTGATGTCACTCCCCTCACCTTCACCCAG ATTTACAGCGGCGAGGCAGACATCATGATCATGTTCGGCAGCCAAGAGCATGGTGATGGGTACCCCTTCGACGGCAAGG ATGGGCTCCTGGCCCACGCCTTTCCCCCCGGCAGTGGGATTCAGGGCGATGCCCACTTCGATGATGATGAGTTCTGGAC TCTGGGAACCGGCTTAGAGGTGAAGACCCGCTATGGGAATGCCAACGGGGCCAGCTGCCACTTCCCCTTCATCTTTGAG GGCCGCTCCTACTCCCGGTGCATCACGGAGGGCCGCACGGATGGGATGCTGTGGTGTGCCACCACCGCCAGCTACGACG CCGACAAGACCTACGGCTTCTGCCCCAGCGAGCTGCTCTACACCAATGGTGGCAACAGCGATGGGTCTCCCTGCGTCTT CCCCTTCATCTTCGATGGCGCCTCCTATGACACCTGCACCACAGATGGGCGCTCTGACGGCTATCGCTGGTGTGCCACC ACGGCCAACTTCGACCAGGACAAGAAATACGGCTTCTGCCCCAACCGAGACACGGCGGCGATCGGTGGCAACTCCCAGG GGGACCCGTGTGTCTTCCCCTTCACCTTCCTGGGGCAGTCCTACAGCGCGCGCACCAGCCAGGGCCGGCAGGACGGGAA GCTCTGGTGTGCCACCACCAGCAACTATGACACCGACAAGAAGTGGGGCTTCTGCCCAGACAGAGGTTACAGCATCTTC TTGGTGGCTGCCCACGAGTTTGGGCACTCACTGGGGCTGGACCACTCCAGCGTGCGCGAGGCATTGATGTACCCTATGT ACAGCTACGTCCAGGACTTCCAGCTGCATGAGGATGATGTCCAGGGCATCCAGTACCTCTATGGTCGTGGCTCTGGCCC TGAGCCCACCCCCCCGGCACCTTTGCCCACCGAGGAGCCCCAGTCCATACCCACCGAAGCTGGCAGTGCTTCCACCACA GAGGAGGAGGAGGAGGAGACACCTGAGCCCACAGCTGAGCCCAGCCCCGTGGACCCCAGCCGGGATGCCTGCATGGAGA AGAACTTCGACGCCATCACTGAGATCAATGGAGAGCTGCACTTCTTCAAGAATGGGAAATACTGGACCCACTCGTCCTT CTGGAAATCAGGCACTCAGGGCGCCTTCTCTATCGCTGACACCTGGCCCGGCCTCCCGGCTGTCATCGACGCGGCGTTC CAAGATGTGCTCACCAAGAGGGTCTTCTTCTTCGCGGGACGGCAGTTCTGGGTGTTCTCCGGCAAGAACGCAGTGGGCC CCCGTAGGATTGAGAAGTTGGGCATTGGGAAGGAGGCCGGGCGCATCACGGGGGCCCTGCAGCGGGGACGTGGCAAAGT GCTGCTCTTCAGTGGGGAGCACTACTGGAGGCTGGACGTGAAGGTCCAGACAGTGGACAAGGGCTACCCCCGTGACACT GATGATGTCTTTACTGGTGTCCCCCTTGACGCACGTAACGTCTTCCTGTACCAAGACAAGTACCACTTCTGCCGGGACA GCTTCTACTGGAGGATGACCCCACGTTACCAGGTGGACCGCGTGGGATACATCAGATACGACCTCCTGCAGTGCCCCCA GCATTAGGGGCGGAGCAGCTGCTCTGGTGCCACGCTCCTGCCTGCTGCTCCAGCCGGTCCCCCTGCAGCCCAGGAGTGC TGTGGGGCAGCCGTGGGGCAGCTGCGGGGTTGCCCCTGCCGTGCCAGGGCTTGCAGTCTCCCTGGCAGGATGGGGCGTG TGCTCCCGGCCCCCACCAGGGGCTGCCCGTCTGGGGAGCGGCGACTCACGCCAGCTTTGCTGCCCGGAGACGTTTGCCC GGCGCAAACTGCACACGGATTTGTAATGACTTTATCTTTTCCTGAGCCAGTAACGCTGGGTCGGCCTCGCGCGGGCAGG GACACGGGGCTTTGTGCCTCCCCCGCCTCGCCGCCGGGTGATGCCATCCTTCACCTGCTCCTTTGTAATAAAAGCCGTC CTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Citation	Shelton EL, Yutzey KE. Tbx20 regulation of endocardial cushion cell proliferation and extrcellular matrix gene epression. Dev Biol. 2007 Feb 1;302(1):267-80.
Copyright	Reprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
Comments	The chicken mmp9 sequence (GenBank accession number AF222690) was amplified from HH stage 30 heart cDNA using the primers 5′-GCTGCCACTTCCCCTTCATCTTTG-3′ and 5′-CGGGGGCCCACTGCGTTCTTG-3′