Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

CBFA2T2
CBFA2/RUNX1 translocation partner 2

Gene

Official Symbol	CBFA2T2
Official Full Name	CBFA2/RUNX1 translocation partner 2
CGNC ID	2242
also known as	MTGR1, protein CBFA2T2\|core-binding factor, runt domain, alpha subunit 2; translocated to, 2\|myeloid translocation gene-related protein 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001011689
Polypeptide	NP_001011689
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.22987

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	9139	ENSG00000078699		MIM:603672
Mouse	12396	ENSMUSG00000038533	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:1333833
Xenopus	100124871, 379213			950033
Zebrafish	767652		ZDB-GENE-070209-1	ZFIN:ZDB-GENE-070209-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	419155
Ensembl Gene	ENSGALG00000003096
KEGG	gga:419155

Entry 1

GEISHA Id	CBFA2T2	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GGCTCGGTTTGAATGGAGGTTAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCAGGACAATGAATGGAACGGG	cDNA Template Length
Complete cDNA Template Probe	show GGCTCGGTTTGAATGGAGGTTACCAGGATGAGTTGGTGGACCACCGCCTGACAGAGAGGGAGTGGGCTGACGAGTGGAA GCACCTCGATCATGCTCTGAACTGCATCATGGAGATGGTGGAGAAGACCCGGCGCTCCATGGCCGTGCTGCGGCGCTGC CAGGAGGCCGACCGTGAGGAGCTCAACTACTGGAAGAGGCGGTGCAGTGAGGCTGAGCCCCGCAAGGCGGGGGGGGAGT TGGGCACAGCCCGGCACAGCCCCGGCAGCTCCGACTCCATCGGCAGCGATTCACTGCGGGAGTTCAGCAGCAGGTCGGG GCCGGGCTACGTCACTGAGGAGATATGGAAGAAAGCAGAAGAAGCCGTGAACGAGGTGAAGCGCCAGGCCATGTCGGAG GTGCAGAAGGCCGTGGCAGAGGCAGAGCAGAAGGCGTTTGAGATGATCGCCTCCGAGAGGGCGCGCATGGAGCAGACCA TCGCCGACGCCAAGCGTCAGGCCACCGAGGATGCTTTCCTGGTGATCAACGAGCAGGAGGAGTCCACGGAGAGCTGCTG GAACTGCGGCCGTAAGGCCAGTGAGACGTGCAGCGGCTGCAACATCGCGCGCTACTGCGGCTCCTTCTGCCAGCACAAG GACTGGGAGAGGCACCACCGCATCTGCGGGCAGAGCCTGCACGGCCACAGCAAGGGGCTGGCACTGCCTGCGGGGCGCT CGGCCAAGGGCATGGATGGCGTGCCCAGCCCCAGCATGGAGAAGAGCTCGGCAGCCACCTCCCGCTCCTCCACGCCCGC ATTTGTGACAGCGATAGACACGAACGGACTCTAAGGGGGAAGTTTGGGTTCAGCCCGTTCCATTCATTGTCCTG

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Early Mesoderm
Notochord
Primitive Streak

primitive groove

7-12

stage 8

stage 10

stage 11

Anterior Neuropore
Blood Islands
Dermatome
Dermomyotome
Endoderm
Forebrain
Foregut
Head Mesenchyme
Heart Tube
Intermediate Mesoderm
Lateral Plate Mesoderm
Mesoderm
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Primitive Streak
Sinus Venosus
Somites
Splanchnic Mesoderm
extraembryonic mesoderm

13-18

stage 16

Dermomyotome
Diencephalon
Foregut
Head Mesenchyme
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somites
Spinal Ganglia and Nerves

ventral mesemtery

19-24

stage 21

stage 22

Ear/Otic Placode
Foregut
Head Mesenchyme
Hindbrain
Hindgut
Leg Mesenchyme
Lung
Mesonephros
Nasal Placode/Nerve
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

25-26

stage 26

Dermomyotome
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Lung
Midbrain
Nasal Placode/Nerve
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 2

GEISHA Id	MTGR1.Koyano-Nakagawa.2005	Data Source	Publication
Complete cDNA Template Probe	show GATCCGGGTACCATGGGCGCCGGGAGCGGGAGGCGGCGAGGAGCCGTGCGATGGTGGGGATCTCGGGAGGCTGCCAGTT TGCTGGTGAGAAGAGGGTGCCAGTGATGCCCGGCTCGCCCGTGGAAGTGAAGATACAGACCAGGTCCTCTCCTCCCAAC ATGCCACCACTGCCCCCCGTCAACCCCGGCGGCCCCCGGCCCGTCTCCTTCACCCCAACTGCACTGCCCAACGGGATGA ACCATTCCCCCCCAACGCTCAACGGGGCACCGTCCCCACCCCAGCGCTTTGGCAACGGCCCGGCCTCCTCCTCCTCTTC CTCACTGACCAACCAGCAGCTCCCGGCCACGTGCGGTGCGCGGCAGCTCAGCAAGCTGAAACGCTTCCTCACCACCCTG CAGCAGTTTGGCAATGACATCTCTCCGGAGATCGGGGAGAAGGTGCGGACCCTGGTCCTGGCCCTGGTGAACTCAACAG TGACGATTGAGGAATTTCACTGCAAGCTGCAAGAGGCGACGAACTTCCCCCTGCGGCCCTTTGTGATCCCCTTCCTGAA GGCCAACCTCCCTCTGCTCCAGAGAGAGCTGCTGCACTGCGCCCGGGCTGCCAAGCAGACACCATCCCAGTACCTGGCC CAGCATGAGCACATCCTTCTCAACACCACCTCCTCCCCAGCCGACTCCTCGGAGCTGCTCATTGAGGTCAACGGGAACG GCAAGAGGCACAGCCCTGACAGAAGGGATGATAACAGCTTCGAGAGGGAGCCGCTGCCGACGGAGCCGCCGGCCAAGCG TGTGTGCACCATCAGCCCTGCGCCCCGGCACAGCCCAGCACTCAGCATCCCAATGCTGAACCCCGGCGGGCAGTTCCAC CCCACCCCACCACCCCTCCAGCACTACACCCTGGAAGACATCGCCACCTCCCATCTGTACAGAGACCCCGGCAAGATGC TGGAGCACAGGGAGATCCGGGACAGGCACGGCGGGCTCGGTTTGAATGGAGGTTACCAGGATGAGTTGGTGGACCACCG CCTGACAGAGAGGGAGTGGGCTGACGAGTGGAAGCACCTCGATCATGCTCTGAACTGCATCATGGAGATGGTGGAGAAG ACCCGGCGCTCCATGGCCGTGCTGCGGCGCTGCCAGGAGGCCGACCGTGAGGAGCTCAACTACTGGAAGAGGCGGTGCA GTGAGGCTGAGCCCCGCAAGGCGGGGGGGGAGTTGGGCACAGCCCGGCACAGCCCCGGCAGCTCCGACTCCATCGGCAG CGATTCACTGCGGGAGTTCAGCAGCAGGTCGGGGCCGGGCTACGTCACTGAGGAGATATGGAAGAAAGCAGAAGAAGCC GTGAACGAGGTGAAGCGCCAGGCCATGTCGGAGGTGCAGAAGGCCGTGGCAGAGGCAGAGCAGAAGGCGTTTGAGATGA TCGCCTCCGAGAGGGCGCGCATGGAGCAGACCATCGCCGACGCCAAGCGTCAGGCCACCGAGGATGCTTTCCTGGTGAT CAACGAGCAGGAGGAGTCCACGGAGAGCTGCTGGAACTGCGGCCGTAAGGCCAGTGAGACGTGCAGCGGCTGCAACATC GCGCGCTACTGCGGCTCCTTCTGCCAGCACAAGGACTGGGAGAGGCACCACCGCATCTGCGGGCAGAGCCTGCACGGCC ACAGCAAGGGGCTGGCACTGCCTGCGGGGCGCTCGGCCAAGGGCATGGATGGCGTGCCCAGCCCCAGCATGGAGAAGAG CTCGGCAGCCACCTCCCGCTCCTCCACGCCCGCATTTGTGACAGCGATAGACACGAACGGACTCTAAGGGGGAAGTTTG GGTTCAGCCCGTTCCATTCATTGTCCTGGTGGTGTTTTTTGTTTTTGAAGTCGGAAAATAAAACCCCCAGGAACTCCTA AAAAAAAAAAAAAAAAAAAA
Citation	Koyano-Nakagawa N, Kintner C. The expression and function of MTG/ETO family proteins during neurogenesis. Dev Biol. 2005 Feb 1;278(1):22-34.
Copyright	Copyright © 2004 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001011689).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-22

stage 22

Spinal Cord
Spinal Ganglia and Nerves

Entry 3

GEISHA Id	CBFA2T2.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGGCCGGGCCGGCTGGGCCGCGCCGGGAGCGGGAGGCGGCGAGGAGCCGTGCGATGGTGGGGATCTCGGGAGGCTGCCA GTTTGCTGGTGAGAAGAGGGTGCCAGTGATGCCCGGCTCGCCCGTGGAAGTGAAGATACAGACCAGGTCCTCTCCTCCC AACATGCCACCACTGCCCCCCGTCAACCCCGGCGGCCCCCGGCCCGTCTCCTTCACCCCAACTGCACTGCCCAACGGGA TGAACCATTCCCCCCCAACGCTCAACGGGGCACCGTCCCCACCCCAGCGCTTTGGCAACGGCCCGGCCTCCTCCTCCTC TTCCTCACTGACCAACCAGCAGCTCCCGGCCACGTGCGGTGCGCGGCAGCTCAGCAAGCTGAAACGCTTCCTCACCACC CTGCAGCAGTTTGGCAATGACATCTCTCCGGAGATCGGGGAGAAGGTGCGGACCCTGGTCCTGGCCCTGGTGAACTCAA CAGTGACGATTGAGGAATTTCACTGCAAGCTGCAAGAGGCGACGAACTTCCCCCTGCGGCCCTTTGTGATCCCCTTCCT GAAGGCCAACCTCCCTCTGCTCCAGAGAGAGCTGCTGCACTGCGCCCGGGCTGCCAAGCAGACACCATCCCAGTACCTG GCCCAGCATGAGCACATCCTTCTCAACACCACCTCCTCCCCAGCCGACTCCTCGGAGCTGCTCATTGAGGTCAACGGGA ACGGCAAGAGGCACAGCCCTGACAGAAGGGATGATAACAGCTTCGAGAGGGAGCCGCTGCCGACGGAGCCGCCGGCCAA GCGTGTGTGCACCATCAGCCCTGCGCCCCGGCACAGCCCAGCACTCAGCATCCCAATGCTGAACCCCGGCGGGCAGTTC CACCCCACCCCACCACCCCTCCAGCACTACACCCTGGAAGACATCGCCACCTCCCATCTGTACAGAGACCCCGGCAAGA TGCTGGAGCACAGGGAGATCCGGGACAGGCACGGCGGGCTCGGTTTGAATGGAGGTTACCAGGATGAGTTGGTGGACCA CCGCCTGACAGAGAGGGAGTGGGCTGACGAGTGGAAGCACCTCGATCATGCTCTGAACTGCATCATGGAGATGGTGGAG AAGACCCGGCGCTCCATGGCCGTGCTGCGGCGCTGCCAGGAGGCCGACCGTGAGGAGCTCAACTACTGGAAGAGGCGGT GCAGTGAGGCTGAGCCCCGCAAGGCGGGGGGGGAGTTGGGCACAGCCCGGCACAGCCCCGGCAGCTCCGACTCCATCGG CAGCGATTCACTGCGGGAGTTCAGCAGCAGGTCGGGGCCGGGCTACGTCACTGAGGAGATATGGAAGAAAGCAGAAGAA GCCGTGAACGAGGTGAAGCGCCAGGCCATGTCGGAGGTGCAGAAGGCCGTGGCAGAGGCAGAGCAGAAGGCGTTTGAGA TGATCGCCTCCGAGAGGGCGCGCATGGAGCAGACCATCGCCGACGCCAAGCGTCAGGCCACCGAGGATGCTTTCCTGGT GATCAACGAGCAGGAGGAGTCCACGGAGAGCTGCTGGAACTGCGGCCGTAAGGCCAGTGAGACGTGCAGCGGCTGCAAC ATCGCGCGCTACTGCGGCTCCTTCTGCCAGCACAAGGACTGGGAGAGGCACCACCGCATCTGCGGGCAGAGCCTGCACG GCCACAGCAAGGGGCTGGCACTGCCTGCGGGGCGCTCGGCCAAGGGCATGGATGGCGTGCCCAGCCCCAGCATGGAGAA GAGCTCGGCAGCCACCTCCCGCTCCTCCACGCCCGCATCTGTGACAGCGATAGACACGAACGGACTCTAAGGGGGAAGT TTGGGTTCAGCCCGTTCCATTCATTGTCCTGGTGGTGTTTTTTGTTTTTGAAGTCGGAAAATAAAACCCCCAGGAACTC CTATCAGTCGACACGTTGGACAAACCCAGGCCACCTCTGTTGGAAGCTCTGCCGCCCCTCCAGCCTCGCTCAGTGCACA GAGAGCTGCAGCCCACCTCCGGGGCTGCAGGAAGGAGTGCTGAGCACGCAGAGCCCTGCTGCTCGGCTCACACACATTC TTCACTGGGGTGTCTGAAGCCCTCTGTGTTCAGCCCCAGGTGTATCTGCCTGTTGTTACCCTGCTCCCAGTGTGTGCTG CTGGCTGTATGCTCTGCGCCACCGGAGCTCATGTGCCAGCAGGAGCATCCTTCCTGCTGTGAGGTGATAAGGACAGGAT CGCTTTGGGGATGGGGGGCAGCAGTTGGGGCTCAGCTCCACTCCAGGGGCTGTGCTGAGTCCCTCTGGGCCGGGACAGC AGCAGTGCTGGGTCTGACAGTGGACCTCTGAACTCCTGCAGACCAAATCTGACTCCCTCACAGGCAATTATTGTCCTTT GCACCTGGGTGCCAATATCTGCAATGCAGGAAGCTTTTTTTTTTGTTGGGTGGAAGTTGTTGGTTTGGGACTTACTACT GTTTTCAACCACAGAGGTCGCAGTGTGAGCGCTGGGTGCTGTCACAGCCTGCTCTTCCCACACAGCTCCTGCCCCAGAG CCCGACCTGAAGCCGTGGGGCCCAGCAGCCCCACCCCGCTCCCCCTCAGCTCCCTGCAGCCGGCAGTGCCTGCAGAGAA GCTGCTCGGGGCAGGGGGTGCGCAGGGCTGTGCTCCAGCACTGTGCTGTCAGCAGTGCAGGAATGGGAGGACCCGCAGT GCACCCGTGCTGAGCTCATGCTGTGCTGCGCACAAATGGGACCGAGGAAAGCATCTGTTCAGCAAAGCTGTGTTTCCAT GACTGGTTTTGTGTGCTCGCTGGGTTGGAGCCCAATGAGGCAAGTAATTCCCAAATTAGTTTTGATCACTTTTTCCATG GGAGGCGAATAATGGAGCTGCAGTGAGTGGTCCCAGAGCTTGCAGCGCTGTGTTGGGGCTGAGCAGCAACGGTGGCCTG CAGGGACTGCGGCTCAGCTCTGCGTCTGCAGGGTTTTATCTTGCAAAGTAAAGCCCCAAAGTCTCCTGGCTCTCTCGGA GCAGCTGTGGTCAGCCCATGGCCCGCAGCGTGAGGGCCGGGCGCTGCCTGCGTGTGTACATAGATCGTCTTCCATCATC CTCATGCGACTTTGGTGGCTGTGTATTAAAATTAACCCCAGGTAAATGAGTACAATACTAACAGTCATGGTTAGAATTA TTTTTTTTCCAACACATAACGATAAATGTGAGCTCTGGACATGGGCAGACTCGTGGGACTGAGTTTTCTATTTTTCTTT TTTTTTTTTTGACATTTAATTCTGTAATAGGAATTTGTTACTTCATTCCTGTGCATAACTTATTTAATGTACTGTATAA AGGAACCCAAACTGTTACAGATGTATTTAGTTTGTTCTACTCGAAAGTAGTCAATAAAAAGACTATTCATCACA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001011689.2 ).