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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CBFA2T2
CBFA2/RUNX1 translocation partner 2

Gene

Official Symbol	CBFA2T2
Official Full Name	CBFA2/RUNX1 translocation partner 2
CGNC ID	2242
also known as	MTGR1, protein CBFA2T2\|core-binding factor, runt domain, alpha subunit 2; translocated to, 2\|myeloid translocation gene-related protein 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001011689
Polypeptide	NP_001011689

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	9139	ENSG00000078699		MIM:603672
Mouse	12396	ENSMUSG00000038533	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:1333833
Xenopus	100124871, 379213			950033
Zebrafish	767652		ZDB-GENE-070209-1	ZFIN:ZDB-GENE-070209-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	419155
Ensembl Gene	ENSGALG00000003096
KEGG	gga:419155

Entry 1

GEISHA Id	CBFA2T2	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GGCTCGGTTTGAATGGAGGTTAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCAGGACAATGAATGGAACGGG	cDNA Template Length
Complete cDNA Template Probe	show GGCTCGGTTTGAATGGAGGTTACCAGGATGAGTTGGTGGACCACCGCCTGACAGAGAGGGAGTGGGCTGACGAGTGGAA GCACCTCGATCATGCTCTGAACTGCATCATGGAGATGGTGGAGAAGACCCGGCGCTCCATGGCCGTGCTGCGGCGCTGC CAGGAGGCCGACCGTGAGGAGCTCAACTACTGGAAGAGGCGGTGCAGTGAGGCTGAGCCCCGCAAGGCGGGGGGGGAGT TGGGCACAGCCCGGCACAGCCCCGGCAGCTCCGACTCCATCGGCAGCGATTCACTGCGGGAGTTCAGCAGCAGGTCGGG GCCGGGCTACGTCACTGAGGAGATATGGAAGAAAGCAGAAGAAGCCGTGAACGAGGTGAAGCGCCAGGCCATGTCGGAG GTGCAGAAGGCCGTGGCAGAGGCAGAGCAGAAGGCGTTTGAGATGATCGCCTCCGAGAGGGCGCGCATGGAGCAGACCA TCGCCGACGCCAAGCGTCAGGCCACCGAGGATGCTTTCCTGGTGATCAACGAGCAGGAGGAGTCCACGGAGAGCTGCTG GAACTGCGGCCGTAAGGCCAGTGAGACGTGCAGCGGCTGCAACATCGCGCGCTACTGCGGCTCCTTCTGCCAGCACAAG GACTGGGAGAGGCACCACCGCATCTGCGGGCAGAGCCTGCACGGCCACAGCAAGGGGCTGGCACTGCCTGCGGGGCGCT CGGCCAAGGGCATGGATGGCGTGCCCAGCCCCAGCATGGAGAAGAGCTCGGCAGCCACCTCCCGCTCCTCCACGCCCGC ATTTGTGACAGCGATAGACACGAACGGACTCTAAGGGGGAAGTTTGGGTTCAGCCCGTTCCATTCATTGTCCTG

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Early Mesoderm
Notochord
Primitive Streak

primitive groove

7-12

stage 8

stage 10

stage 11

Anterior Neuropore
Blood Islands
Dermatome
Dermomyotome
Endoderm
Forebrain
Foregut
Head Mesenchyme
Heart Tube
Intermediate Mesoderm
Lateral Plate Mesoderm
Mesoderm
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Primitive Streak
Sinus Venosus
Somites
Splanchnic Mesoderm
extraembryonic mesoderm

13-18

stage 16

Dermomyotome
Diencephalon
Foregut
Head Mesenchyme
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somites
Spinal Ganglia and Nerves

ventral mesemtery

19-24

stage 21

stage 22

Ear/Otic Placode
Foregut
Head Mesenchyme
Hindbrain
Hindgut
Leg Mesenchyme
Lung
Mesonephros
Nasal Placode/Nerve
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

25-26

stage 26

Dermomyotome
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Lung
Midbrain
Nasal Placode/Nerve
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 2

GEISHA Id	MTGR1.Koyano-Nakagawa.2005	Data Source	Publication
Complete cDNA Template Probe	show GATCCGGGTACCATGGGCGCCGGGAGCGGGAGGCGGCGAGGAGCCGTGCGATGGTGGGGATCTCGGGAGGCTGCCAGTT TGCTGGTGAGAAGAGGGTGCCAGTGATGCCCGGCTCGCCCGTGGAAGTGAAGATACAGACCAGGTCCTCTCCTCCCAAC ATGCCACCACTGCCCCCCGTCAACCCCGGCGGCCCCCGGCCCGTCTCCTTCACCCCAACTGCACTGCCCAACGGGATGA ACCATTCCCCCCCAACGCTCAACGGGGCACCGTCCCCACCCCAGCGCTTTGGCAACGGCCCGGCCTCCTCCTCCTCTTC CTCACTGACCAACCAGCAGCTCCCGGCCACGTGCGGTGCGCGGCAGCTCAGCAAGCTGAAACGCTTCCTCACCACCCTG CAGCAGTTTGGCAATGACATCTCTCCGGAGATCGGGGAGAAGGTGCGGACCCTGGTCCTGGCCCTGGTGAACTCAACAG TGACGATTGAGGAATTTCACTGCAAGCTGCAAGAGGCGACGAACTTCCCCCTGCGGCCCTTTGTGATCCCCTTCCTGAA GGCCAACCTCCCTCTGCTCCAGAGAGAGCTGCTGCACTGCGCCCGGGCTGCCAAGCAGACACCATCCCAGTACCTGGCC CAGCATGAGCACATCCTTCTCAACACCACCTCCTCCCCAGCCGACTCCTCGGAGCTGCTCATTGAGGTCAACGGGAACG GCAAGAGGCACAGCCCTGACAGAAGGGATGATAACAGCTTCGAGAGGGAGCCGCTGCCGACGGAGCCGCCGGCCAAGCG TGTGTGCACCATCAGCCCTGCGCCCCGGCACAGCCCAGCACTCAGCATCCCAATGCTGAACCCCGGCGGGCAGTTCCAC CCCACCCCACCACCCCTCCAGCACTACACCCTGGAAGACATCGCCACCTCCCATCTGTACAGAGACCCCGGCAAGATGC TGGAGCACAGGGAGATCCGGGACAGGCACGGCGGGCTCGGTTTGAATGGAGGTTACCAGGATGAGTTGGTGGACCACCG CCTGACAGAGAGGGAGTGGGCTGACGAGTGGAAGCACCTCGATCATGCTCTGAACTGCATCATGGAGATGGTGGAGAAG ACCCGGCGCTCCATGGCCGTGCTGCGGCGCTGCCAGGAGGCCGACCGTGAGGAGCTCAACTACTGGAAGAGGCGGTGCA GTGAGGCTGAGCCCCGCAAGGCGGGGGGGGAGTTGGGCACAGCCCGGCACAGCCCCGGCAGCTCCGACTCCATCGGCAG CGATTCACTGCGGGAGTTCAGCAGCAGGTCGGGGCCGGGCTACGTCACTGAGGAGATATGGAAGAAAGCAGAAGAAGCC GTGAACGAGGTGAAGCGCCAGGCCATGTCGGAGGTGCAGAAGGCCGTGGCAGAGGCAGAGCAGAAGGCGTTTGAGATGA TCGCCTCCGAGAGGGCGCGCATGGAGCAGACCATCGCCGACGCCAAGCGTCAGGCCACCGAGGATGCTTTCCTGGTGAT CAACGAGCAGGAGGAGTCCACGGAGAGCTGCTGGAACTGCGGCCGTAAGGCCAGTGAGACGTGCAGCGGCTGCAACATC GCGCGCTACTGCGGCTCCTTCTGCCAGCACAAGGACTGGGAGAGGCACCACCGCATCTGCGGGCAGAGCCTGCACGGCC ACAGCAAGGGGCTGGCACTGCCTGCGGGGCGCTCGGCCAAGGGCATGGATGGCGTGCCCAGCCCCAGCATGGAGAAGAG CTCGGCAGCCACCTCCCGCTCCTCCACGCCCGCATTTGTGACAGCGATAGACACGAACGGACTCTAAGGGGGAAGTTTG GGTTCAGCCCGTTCCATTCATTGTCCTGGTGGTGTTTTTTGTTTTTGAAGTCGGAAAATAAAACCCCCAGGAACTCCTA AAAAAAAAAAAAAAAAAAAA
Citation	Koyano-Nakagawa N, Kintner C. The expression and function of MTG/ETO family proteins during neurogenesis. Dev Biol. 2005 Feb 1;278(1):22-34.
Copyright	Copyright © 2004 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001011689).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-22

stage 22

Spinal Cord
Spinal Ganglia and Nerves

Entry 3

GEISHA Id	CBFA2T2.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGGCCGGGCCGGCTGGGCCGCGCCGGGAGCGGGAGGCGGCGAGGAGCCGTGCGATGGTGGGGATCTCGGGAGGCTGCCA GTTTGCTGGTGAGAAGAGGGTGCCAGTGATGCCCGGCTCGCCCGTGGAAGTGAAGATACAGACCAGGTCCTCTCCTCCC AACATGCCACCACTGCCCCCCGTCAACCCCGGCGGCCCCCGGCCCGTCTCCTTCACCCCAACTGCACTGCCCAACGGGA TGAACCATTCCCCCCCAACGCTCAACGGGGCACCGTCCCCACCCCAGCGCTTTGGCAACGGCCCGGCCTCCTCCTCCTC TTCCTCACTGACCAACCAGCAGCTCCCGGCCACGTGCGGTGCGCGGCAGCTCAGCAAGCTGAAACGCTTCCTCACCACC CTGCAGCAGTTTGGCAATGACATCTCTCCGGAGATCGGGGAGAAGGTGCGGACCCTGGTCCTGGCCCTGGTGAACTCAA CAGTGACGATTGAGGAATTTCACTGCAAGCTGCAAGAGGCGACGAACTTCCCCCTGCGGCCCTTTGTGATCCCCTTCCT GAAGGCCAACCTCCCTCTGCTCCAGAGAGAGCTGCTGCACTGCGCCCGGGCTGCCAAGCAGACACCATCCCAGTACCTG GCCCAGCATGAGCACATCCTTCTCAACACCACCTCCTCCCCAGCCGACTCCTCGGAGCTGCTCATTGAGGTCAACGGGA ACGGCAAGAGGCACAGCCCTGACAGAAGGGATGATAACAGCTTCGAGAGGGAGCCGCTGCCGACGGAGCCGCCGGCCAA GCGTGTGTGCACCATCAGCCCTGCGCCCCGGCACAGCCCAGCACTCAGCATCCCAATGCTGAACCCCGGCGGGCAGTTC CACCCCACCCCACCACCCCTCCAGCACTACACCCTGGAAGACATCGCCACCTCCCATCTGTACAGAGACCCCGGCAAGA TGCTGGAGCACAGGGAGATCCGGGACAGGCACGGCGGGCTCGGTTTGAATGGAGGTTACCAGGATGAGTTGGTGGACCA CCGCCTGACAGAGAGGGAGTGGGCTGACGAGTGGAAGCACCTCGATCATGCTCTGAACTGCATCATGGAGATGGTGGAG AAGACCCGGCGCTCCATGGCCGTGCTGCGGCGCTGCCAGGAGGCCGACCGTGAGGAGCTCAACTACTGGAAGAGGCGGT GCAGTGAGGCTGAGCCCCGCAAGGCGGGGGGGGAGTTGGGCACAGCCCGGCACAGCCCCGGCAGCTCCGACTCCATCGG CAGCGATTCACTGCGGGAGTTCAGCAGCAGGTCGGGGCCGGGCTACGTCACTGAGGAGATATGGAAGAAAGCAGAAGAA GCCGTGAACGAGGTGAAGCGCCAGGCCATGTCGGAGGTGCAGAAGGCCGTGGCAGAGGCAGAGCAGAAGGCGTTTGAGA TGATCGCCTCCGAGAGGGCGCGCATGGAGCAGACCATCGCCGACGCCAAGCGTCAGGCCACCGAGGATGCTTTCCTGGT GATCAACGAGCAGGAGGAGTCCACGGAGAGCTGCTGGAACTGCGGCCGTAAGGCCAGTGAGACGTGCAGCGGCTGCAAC ATCGCGCGCTACTGCGGCTCCTTCTGCCAGCACAAGGACTGGGAGAGGCACCACCGCATCTGCGGGCAGAGCCTGCACG GCCACAGCAAGGGGCTGGCACTGCCTGCGGGGCGCTCGGCCAAGGGCATGGATGGCGTGCCCAGCCCCAGCATGGAGAA GAGCTCGGCAGCCACCTCCCGCTCCTCCACGCCCGCATCTGTGACAGCGATAGACACGAACGGACTCTAAGGGGGAAGT TTGGGTTCAGCCCGTTCCATTCATTGTCCTGGTGGTGTTTTTTGTTTTTGAAGTCGGAAAATAAAACCCCCAGGAACTC CTATCAGTCGACACGTTGGACAAACCCAGGCCACCTCTGTTGGAAGCTCTGCCGCCCCTCCAGCCTCGCTCAGTGCACA GAGAGCTGCAGCCCACCTCCGGGGCTGCAGGAAGGAGTGCTGAGCACGCAGAGCCCTGCTGCTCGGCTCACACACATTC TTCACTGGGGTGTCTGAAGCCCTCTGTGTTCAGCCCCAGGTGTATCTGCCTGTTGTTACCCTGCTCCCAGTGTGTGCTG CTGGCTGTATGCTCTGCGCCACCGGAGCTCATGTGCCAGCAGGAGCATCCTTCCTGCTGTGAGGTGATAAGGACAGGAT CGCTTTGGGGATGGGGGGCAGCAGTTGGGGCTCAGCTCCACTCCAGGGGCTGTGCTGAGTCCCTCTGGGCCGGGACAGC AGCAGTGCTGGGTCTGACAGTGGACCTCTGAACTCCTGCAGACCAAATCTGACTCCCTCACAGGCAATTATTGTCCTTT GCACCTGGGTGCCAATATCTGCAATGCAGGAAGCTTTTTTTTTTGTTGGGTGGAAGTTGTTGGTTTGGGACTTACTACT GTTTTCAACCACAGAGGTCGCAGTGTGAGCGCTGGGTGCTGTCACAGCCTGCTCTTCCCACACAGCTCCTGCCCCAGAG CCCGACCTGAAGCCGTGGGGCCCAGCAGCCCCACCCCGCTCCCCCTCAGCTCCCTGCAGCCGGCAGTGCCTGCAGAGAA GCTGCTCGGGGCAGGGGGTGCGCAGGGCTGTGCTCCAGCACTGTGCTGTCAGCAGTGCAGGAATGGGAGGACCCGCAGT GCACCCGTGCTGAGCTCATGCTGTGCTGCGCACAAATGGGACCGAGGAAAGCATCTGTTCAGCAAAGCTGTGTTTCCAT GACTGGTTTTGTGTGCTCGCTGGGTTGGAGCCCAATGAGGCAAGTAATTCCCAAATTAGTTTTGATCACTTTTTCCATG GGAGGCGAATAATGGAGCTGCAGTGAGTGGTCCCAGAGCTTGCAGCGCTGTGTTGGGGCTGAGCAGCAACGGTGGCCTG CAGGGACTGCGGCTCAGCTCTGCGTCTGCAGGGTTTTATCTTGCAAAGTAAAGCCCCAAAGTCTCCTGGCTCTCTCGGA GCAGCTGTGGTCAGCCCATGGCCCGCAGCGTGAGGGCCGGGCGCTGCCTGCGTGTGTACATAGATCGTCTTCCATCATC CTCATGCGACTTTGGTGGCTGTGTATTAAAATTAACCCCAGGTAAATGAGTACAATACTAACAGTCATGGTTAGAATTA TTTTTTTTCCAACACATAACGATAAATGTGAGCTCTGGACATGGGCAGACTCGTGGGACTGAGTTTTCTATTTTTCTTT TTTTTTTTTTGACATTTAATTCTGTAATAGGAATTTGTTACTTCATTCCTGTGCATAACTTATTTAATGTACTGTATAA AGGAACCCAAACTGTTACAGATGTATTTAGTTTGTTCTACTCGAAAGTAGTCAATAAAAAGACTATTCATCACA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001011689.2 ).