GEISHA - A Chicken Embryo Gene Expression Database
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MYF5
myogenic factor 5

Gene
Official SymbolMYF5
Official Full Namemyogenic factor 5
CGNC ID8312
also known asmyf-5, myogenic factor 5|Myf5 homolog, Myogenic Factor 5, MYF5
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001030363
PolypeptideNP_001025534
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.379
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly42799FBgn0002922
Human4617ENSG00000111049MIM:159990
Mouse17877ENSMUSG00000000435All phenotypic alleles (15):Targeted, knock-out(4) Targeted, other(11) MGI:97252
Xenopus394529, 397960493549
Zebrafish58097ENSDARG00000007277ZDB-GENE-000616-6ZFIN:ZDB-GENE-000616-6
Gene Ontology
Molecular FunctionE-box binding, protein heterodimerization activity
Biological Processmuscle cell fate commitment, muscle organ development, regulation of transcription, DNA-templated, more...transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395633
Ensembl Gene
KEGGgga:395633

Entry 1

GEISHA Idpgm1c.pk001.m21Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CTAATTGCGGAGGGAATCGCTGCATTGCGCTGCGAGCTGCCAGCCCACACTGCTGCCTTGGACGAAGAGATGGAGGTGA
TGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCTTGCCTGTCGTCCCCTGAGGGCGAGTTCCCCGA
GGATTTTGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGAAGAGGAACAC
GTCCGGGCCCCGAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGGAAATCCACCA
CCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCGAGACCTTGAA
GAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTACATCGAGAGC
CTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCCACCAGCCCCA
GCTCCAGCTGCTCCGATGTGATGGCGGACTGCGGCAGCCCGGTCTGGCCGGCGAGAGNCAGCAGCTTCGNNNCGGGCTA
CTGCCCCGAGATGCCCCACG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Myotome
 
13-18
stage 14
stage 16
stage 17
Myotome
 
19-24
stage 19
stage 21
stage 24
Face Mesenchyme
Head Mesenchyme
Leg Muscles
Myotome
Pharyngeal Arches and Clefts
Wing Muscles
 

Entry 2

GEISHA IdMyf5.Amthor.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationAmthor H, Otto A, Macharia R, McKinnell I, Patel K. Myostatin imposes reversible quiescence on embryonic muscle precursors. Dev Dyn. 2006 Mar;235(3):672-80.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsThe following probes were used in this study: MyoD, clone CMD9 1.5-kb full-length fragment (a gift from Professor Bruce Patterson); Pax-3, a 645-bp fragment corresponding to nucleotides 468-1,113 (a gift from Dr. Martin Goulding); Myf-5, a 1.1-kb fragment and Myogenin, a 1.2-kb fragment (both kind gifts from Professor Antony Graham); Pax-7 a 582-bp fragment (a kind gift from Dr. Susanne Dietrich).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-22
stage 22
Limb Buds
Wing
 

Entry 3

GEISHA IdMyf5.Noden.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationNoden DM, Francis-West P. The differentiation and morphogenesis of craniofacial muscles. Dev Dyn. 2006 May;235(5):1194-218. Review.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-21
stage 21
Pharyngeal Arches and Clefts
 

Entry 4

GEISHA IdMyf5.Bothe.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationBothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided to verify exact probe sequence. Sequence obtained from NCBI (NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Somites
 

Entry 5

GEISHA IdMyf5.Ahmed.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationAhmed MU, Cheng L, Dietrich S. Establishment of the epaxial-hypaxial boundary in the avian myotome. Dev Dyn. 2006 Jul;235(7):1884-94.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
stage 22
stage 24
Myotome
 
25
stage 25
Myotome
 

Entry 6

GEISHA IdMYF5.Bothe.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationBothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
Dermatome
Myotome
Somites
 
19-24
stage 24
stage 24
Dermatome
Myotome
Somites
 

Entry 7

GEISHA IdMyf5.Reijntjes.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationReijntjes S, Stricker S, Mankoo BS. A comparative analysis of Meox1 and Meox2 in the developing somites and limbs of the chick embryo. Int J Dev Biol.(2007); 51(8:753-9.
CopyrightReprinted from Int. J. Dev. Biol., 51, Reijntjes S, Stricker S, Mankoo BS, A comparative analysis of Meox1 and Meox2 in the developing somites and limbs of the chick embryo, 753-9, Copyright © 2007 UBC Press, with permission. All rights reserved.
CommentsAccording to authors , "MyoD, Pax3 and Myf5 anti-sense probes were a kind gift of Philippa Francis-West.." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
stage 22
Limb Buds
Somites
 
25
stage 25
Leg Muscles
Myotome
Wing Muscles
 

Entry 8

GEISHA IdMyf5.Duprez.2002Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationDuprez, D (2002). Signals regulating muscle formation in the limb during embryonic development. Int J Dev Biol. 2002;46(7):915-25.
Copyright"Reprinted from Int. J. Dev. Biol., 46, Duprez, D, Signals regulating muscle formation in the limb during embryonic development, 915-25, Copyright (2002), with permission from Copyright © 2002 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 23
Leg Muscles
Myotome
Wing Muscles
 
25-30
stage 26
Leg Muscles
Myotome
Somites
Wing Muscles
 
31-44
stage 44
Leg Muscles
Myotome
Wing Muscles
Comparison of several probes

Entry 9

GEISHA IdMyf5.Pujades.2002Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationPujades C, Guez-Guez B, Dunon D. Melanoma Cell Adhesion Molecule (MCAM) expression in the myogenic lineage during early chick embryonic development. Int J Dev Biol. 2002 Mar;46(2):263-6.
Copyright"Reprinted from Int. J. Dev. Biol., 46, Pujades C, Guez-Guez B, Dunon D, Melanoma Cell Adhesion Molecule (MCAM) expression in the myogenic lineage during early chick embryonic development, 263-6, Copyright (2002), with permission from Copyright © 2002 UBC Press". All rights reserved.
CommentsAccording to authors, "Total RNA preparation, RT-PCR and oligonucleotides for amplification of Myf5 cDNA were as described (Montarras et al., 1991)" As access to Montarras et al., 1991 paper was unavailable to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Somites
 
13-17
stage 14
stage 17
Myotome
 

Entry 10

GEISHA IdMYF5.Kiefer.2001Data SourcePublication
Forward cDNA Template Probeshow
ACTTTGTCTCGGGTCGCTAATTGCGGAGGGAATCGCTGCATTGTGCTGCGAGCTGCCAGCCCACACTGCTGCCTCGGAC
GAAGAGATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTG
AGGGCGAGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCC
TGAGGAAGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGC
AAGAGGAAATCCACCACCATG
Reverse cDNA Template Probeshow
AGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCCACCAGCCCCAGCTCCAGCTGCTCCG
ATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCGAGGCGGGCTACTGCCGCGAGATGCC
CCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTCCAGCATCGTGGACCGCCTCTCTCCG
GCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCCAGCATCGACTCGGGGCCCGGGACGC
CCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationKiefer JC, Hauschka SD (2001). Myf-5 is transiently expressed in nonmuscle mesoderm and exhibits dynamic regional changes within the presegmented mesoderm and somites I-IV. Dev Biol. 2001 Apr 1;232(1):77-90.
CopyrightCopyright © 2001 Academic Press All rights reserved.
CommentsAccording to the authors, "The reported Myf-5 expression patterns were confirmed with two in situ hybridization probes. One from accession # X73250..." The sequences below was obtained from NCBI (NM_001030363 and X73250) using the primers provided in the paper.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Early Mesoderm
Epiblast
Primitive Streak
 
4-6
stage 5
Early Endoderm
Hensen's Node
Primitive Streak
 
7-12
stage 7
stage 8
stage 10
stage 12
stage 12
Hensen's Node
Paraxial Mesoderm
Primitive Streak
Somites
Presegmented Mesoderm
13-18
stage 13
stage 13
stage 13
stage 13
stage 13
stage 13
stage 13
stage 13
stage 13
stage 18
stage 18
Dermomyotome
Myotome
Paraxial Mesoderm
Somites
Caudal Presegmented Mesoderm
Dermamyotome Lip
Dermomyotome Lip
Dorsomedial Somite
Presegmented Mesoderm
Rostral Presegmented Mesoderm
Somite I
Somite III
Somite IX
Somite V
Somite VIII
Thoracic Somite

Entry 11

GEISHA IdMYF5.Wilm.2004Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationWilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89.
CopyrightCopyright © 2004 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-35
stage 35
Dermomyotome
Somites
 

Entry 12

GEISHA IdMYF5.Huang.2003Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationHuang R, Stolte D, Kurz H, Ehehalt F, Cann GM, Stockdale FE, Patel K, Christ B. Ventral axial organs regulate expression of myotomal Fgf-8 that influences rib development. Dev Biol. 2003 Mar 1;255(1):30-47.
CopyrightCopyright © 2003 Elsevier Science (USA) All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-22
stage 22
Leg Mesenchyme
Somites
Wing Mesenchyme
 

Entry 13

GEISHA IdMYF5.Tzahor.2003Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationTzahor E, Kempf H, Mootoosamy RC, Poon AC, Abzhanov A, Tabin CJ, Dietrich S, Lassar AB. Antagonists of Wnt and BMP signaling promote the formation of vertebrate head muscle. Genes Dev. 2003 Dec 15;17(24):3087-99.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_001030363.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
stage 17
stage 17
stage 17
stage 18
stage 18
stage 18
Peripheral Nervous System
Pharyngeal Arches and Clefts
Somites
Left side = control embryo
left side = control embryo
19
stage 19
stage 19
stage 19
stage 19
Pharyngeal Arches and Clefts
lateral rectus muscle (lr)

Entry 14

GEISHA IdMYF5.Reijntjes.2010Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationReijntjes S, Francis-West P, Mankoo BS. Retinoic acid is both necessary for and inhibits myogenic commitment and differentiation in the chick limb. Int J Dev Biol. 2010;54(1):125-34
Copyright© 2009 UBC Press
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_001030363).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
Limb Buds
M. Stage 22 embryo: Shows normal expression.
25
stage 25
stage 25
Limb Buds
Somites
B. Untreated/Control Embryo: Shows the normal expression of Myf5.
N. Untreated/Control Embryo: Shows the normal expression of Myf5.
all
 
 
  

Entry 15

GEISHA IdMyf5.Zhang.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationZhang X, Dai F, Weise C, Yusuf F, Bonafede A, Morosan-Puopolo G, Rehimi R, Wang J, Brand-Saberi B. Expression of the avian gene cNOC2 encoding nucleolar complex associated protein 2 during embryonic development. 2006 Nov;211(6):649-57
Copyright© Springer-Verlag 2006
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_001030363.1).
no images

Entry 16

GEISHA IdMyf-5.Cauthen.2001Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationCauthen CA, Berdougo E, Sandler J, Burrus LW. Comparative analysis of the expression patterns of Wnts and Frizzleds during early myogenesis in chick embryos. Mech Dev. 2001 Jun;104(1-2):133-8.
CopyrightCopyright © 2001 Elsevier Science Ireland Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030363.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
Somites
 
all
 
  

Entry 17

GEISHA IdMyf5.Draga.2019Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CitationMargarethe Draga, Kathrin Heim, Renate Batke, Martin Wegele, Felicitas Pröls, Martin Scaal. Somite development in the avian tail. J Anat. 2019 Oct;235(4):716-724. Epub 2019 Jun 21. DOI: 10.1111/joa.13032.
CopyrightCopyright © 2019 Anatomical Society.
CommentsAuthors indicated the probe was kindly provided by Bodo Christ. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, above sequence was obtained from NCBI (NM_001030363.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 20
stage 20
stage 20
stage 20
stage 20
stage 23
stage 23
stage 23
stage 23
stage 23
Dermomyotome
Myotome
Unlabeled
somite I
somite II
somite III
somite IV
25-27
stage 27
stage 27
stage 27
stage 27
stage 27
Myotome
somite I
somite II
somite III
somite IV
all
 
  

Entry 18

GEISHA IdMYF5.Kahane.2013Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
ATGGAGGTGATGGACAGCTGCCAGTTCTCCCCATCCGAGCTCTTCTATGACAGCTCCTGCCTGTCGTCCCCTGAGGGCG
AGTTCCCTGAGGATTTCGAGCCCAGGGAGCTGCCTCCCTTTGGAGCCCCTGCGCCCACTGAGCCTGCCTGCCCTGAGGA
AGAGGAACACGTCCGGGCCCCCAGTGGGCACCACCAGGCCGGCCACTGCCTCATGTGGGCTTGCAAAGCCTGCAAGAGG
AAATCCACCACCATGGACCGGCGGAAGGCAGCCACTATGAGGGAGAGGAGGAGGCTGAAGAAAGTGAACCAAGCATTCG
AGACCTTGAAGAGGTGCACCACGGCCAACCCCAACCAGAGACTCCCCAAAGTGGAGATCCTGAGGAACGCCATCAGGTA
CATCGAAAGCCTCCAGGAGCTCTTGAGGGAACAGGTGGAGAACTACTATCACCTGCCGGGACAGAGCTGCTCCGAGCCC
ACCAGCCCCAGCTCCAGCTGCTCCGATGTGATGGCGGACTCGCGCAGCCCGGTCTGGCCGGCGAGAGGCAGCAGCTTCG
AGGCGGGCTACTGCCGCGAGATGCCCCACGGCTACGCGACGGAGCAGAGTGGCGCGCTGTCCAGCCTGGACTGCCTCTC
CAGCATCGTGGACCGCCTCTCTCCGGCGGAGGAGCCGGGGCTGCCCCTCCGTCACGCCGGCTCCCTCTCGCCAGGCGCC
AGCATCGACTCGGGGCCCGGGACGCCCGGCTCGCCGCCGCCCCGACGGACCTACCAGGCGCTATGA
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_001030363.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-17
stage 17
Myotome
control embryo
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.379

Mouse

EmageMGI:97252
EurexpressMGI:97252
MGI GXDMGI:97252

Frog

Xenbase493549

Fruit Fly

BDGPFBgn0002922

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-000616-6
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