GEISHA - A Chicken Embryo Gene Expression Database
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EPAS1
endothelial PAS domain protein 1

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolEPAS1
Official Full Nameendothelial PAS domain protein 1
CGNC ID49393
also known asHIF2a, endothelial PAS domain-containing protein 1, endothelial PAS domain protein 1 , HIF2alpha, Hypoxia-inducible factor 2 alpha
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204807
PolypeptideNP_990138
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.43355
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human2034ENSG00000116016MIM:611783MIM:603349
Mouse13819ENSMUSG00000024140All phenotypic alleles (8):Targeted, knock-out(3) Targeted, other(5) MGI:109169
Xenopus448117, 444145981611
Zebrafish555192, 566886ENSDARG00000057671, ENSDARG00000008697ZDB-GENE-060607-11, ZDB-GENE-030131-4490ZFIN:ZDB-GENE-060607-11, ZFIN:ZDB-GENE-030131-4490
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395596
Ensembl GeneENSGALG00000010005
KEGGgga:395596

Entry 1

GEISHA IdN19Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GCAACAATATGAGTAGGTCATCATTGCCACCATACCACAACCAAGCCAGCACTCCGCTGTCTTCGATGGGGGGTAGACC
AAACACCCAGTGGCCACCTGATCCGCCATTAGAATATGTTCCTTCTAAATGGAGACTCATGGATAAATACTCAGGAACC
CTATCAAGTTCCCCCTCAGGACCCCCAGTGCGTTCTCCCAACATGCCTTCATATCACTAAAGAAAATGGAACAGCTGGC
AATGGTACAGAAGGTGCAAAATCGAGCCATAGAAACTGAGAACCCAGCAAGGTAATTGCTTTGTAGACATCCAGTTCCA
AACTGAAGAGACAACTGGATTACGAAGATGCATTCTAGCATTGCACTGACAGCTTGCAGAGAGGGAGATCCATCTGGGT
TCATCAACCCACCTCAGTTAGATTGCTGTGATAGAGAATGAAATTTCTCAAACGGGATACATACTGTGCACTCGCTTAC
AGAAAAGAAGTCTCTCAGCACAAGTGATCTTACTGATGAGTATGTCTGCATACTCGAGAGGTCTAAGCCAACCAATGAA
TTACAACTGCAGTCCTTATTGCAGGCAGGTCAATCAACAGTTGTGTTGCTTTATGCTCTTTTTTTCTGGTGAACAATCT
GAAAGCAGGAGCGTACTCCCATAAAGTGAATTTATAGTCCCCATTATCAGGAATATACTGTGCAGTCAGCTCATAAAGA
GTCAACATGTAACGAATCGAAAATGCTGGCAAGTCTTCAGATTTGAACCATATTTGCAGTGCCAAGGACTTAAAGGCAT
CAAAGACTAAAGACACTGTGAAGTAAACGTCCCTGTTTTCGGTTTCTTATTTGTGTCCACGCTTCTGCAGGGCATTAAA
AACTGCTATAGAGCCCTAGACCAGGCAACCTAAAACAATCCTGCAAAAATATTCCCTGGCCTATAATATTCAAACAGCT
TCACTTTTTAATCATAATTATTTGCAGTAGATCGATATTGCTGAATAACCTATTGACAATATTATAACTATATGGGAAC
TTTAATTTGACCTAAGTGAAATGTACCCGTTGACAAATGAGTCCGCTTATTAAAGTATACTCACTCCTATAATCAAATA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Primitive Streak
 
7-12
stage 8
stage 12
stage 12
Extraembryonic
 
13-18
stage 13
stage 14
stage 16
Extraembryonic
 
19-24
stage 21
stage 23
stage 24
Extraembryonic
 

Entry 2

GEISHA IdEPAS1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerGGCTGGAAACTCAAGGGACCG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGCATTGGTTGGCTCAGACCTCTCGcDNA Template Length1370
Forward cDNA Template Probeshow
CCCTCGATCACTCAGTAAAACTCTCGTAGAAACTTGTGCTGAGAGACTTCTTTTCTGTAAGCCCCTTTACAGTGTTTCC
CCTTTGAGAAATTTCATTCTCTTCCACACTTAACTGAGGTGGGTTAATGACAGATGGATCTCCCCCACTCAGCTGTTGC
AATGCTTGCTCTTCGTAATCCAGTTGTCTCTTCAGTTTCAAACTATTAGACAAAGCAATTCTTGCTGGGTTTATATCTA
TGCCTCGTTGCCCCAAACCATCCAGCGGCCTTTTTTTATATATGGGCATGTTGGGAGAACGCACTGGGGGTCCTGAGGG
GGAACTTGATAGGGTTCCTGAGTATTTATCCATGAGTCTCCATTTAGAAGGAACATATTCTAATGGCGGATCAGGTGGC
CACTGGGTGTTTGGTCTACCCCCCATCCAAAACAGCGGAGTGCTGGCTTGGTTGTGGTATGGTGGCAATGATGACCTAC
TCATATTGTTGAAGAACACCGATGATAAGGACCCATGACCAGGGTTAATGTTTTTATTTGATAGTTGTGGGCAATATTT
CTCTGGGAGGAACTGATTCTGTGAAGCAGAAACAAGAAGTTGGAAAATGGTACTCCTGCTACTTAGAAACAACTGGGTA
TTTTGTGCCCTTTCACAGAAAGAAAGTTCTTCTTGTCAGATAGGGCTGAACTGGAAATCTTCTCCATCCATAAGAATGT
AAAGAGTTTAAGGTTTCTAGGTCCAGTTCTTTGAAATCAGTCTGACAGTTTGAACAGACTTTTTGATTTCTGTGTTCAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 9
stage 10
Area Opaca
Blood Islands
Extraembryonic
 

Entry 3

GEISHA IdHif2alpha.Ota.2007Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
AGCAAGACCTTCATGAGTCGCCATAGCATGGACATGAAATTCACCTACTGTGATGACAGAATAACAGAATTGATTGGAT
ACCACCCAGAAGAGTTGCTGGGCCGTTCAGCATATGAGTTCTACCATGCCTTGGACTCAGAGAACATGACCAAAAGTCA
TCAGAACTTGTGTACAAAAGGTCAAGTAGTGACTGGCCAGTACCGTATGCTTGCCAAGCATGGTGGATACGTGTGGCTG
GAAACTCAAGGGACCGTCATTTACAACACGCGCAACCTACAGCCTCAGTGTATCATCTGTGTCAACTATGTGCTGAGTG
AAATTGAGAAGAATGATATTGTCTTCTCTATGGACCAAACGGAATCGCTCTTCAAGCCACACCTGTTGACGATGAGCAG
TGCCTTTGAGAATGGGATCTCAGGGAGGGACAAGAGTGATTTATTGTTTACTAAGCTAAAAGAAGAACCGGAGGAACTT
GCACAACTGGCTCCAACACCTGGAGATGCCATTATTTCCCTGGATTTTGAACTCCATCCAGGGATACAGAAGTTTGAGG
AAGCCCCTGCCTATACGAGCGCTGTTTTGACACCAAACAAACCGTGGCCAGTAGAAGTGAAAAGCCATGCTGCTCAAGG
TGAAACGCTGACAATACCATCCTTTACAATGCCACAGATTGCACCTGGCAGCAGTACTCCAAGTGCAAGCAGCAACAGT
AGCTGTTCCACGCCAAACAGCCCGGAGGATTACTACACTTCTGTGGATGATGATCTTA
CommentsCopyright © 2007 Elsevier B.V. All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 5
stage 5
stage 6
stage 6
Area Opaca
Ectoderm
Extraembryonic
Stage 4+
7-12
stage 7
stage 8
stage 8
stage 9
stage 9
stage 10
stage 10
stage 12
stage 12
Area Opaca
Blood Islands
Ectoderm
Endoderm
Extraembryonic
 
13-14
stage 14
stage 14
Blood Islands
Ectoderm
Endoderm
Extraembryonic
 

Entry 4

GEISHA IdHIF-2a.Nanka.2006Data SourcePublication
Complete cDNA Template Probeshow
CCCGCCGCCGAGCCGCTGCCGTCTGCCGTGTCGCCGCCGCTGCCTCCCCCGGGCGGGCCGTACAATCCTCGGCAGTGTC
CTGAGACTGTACGCCCGCCTCGGGGGCGACCCGGCACAGCCGGCCACGCCGACCCCAGCCGACCCCGACCGGCCGCCCG
CGGAGTCTCGCGTCCCGCGTGCAGGTGCTGAGCCCGCCCCGGCCCGAGAGGCGGCGCAGGAGCCGACAGCCGACGCGAT
GACAGCTGACAAGGAGAAGAAGAGGAGCAGTTCTGAGCGGAGGAAGGAGAAATCAAGAGATGCAGCAAGATGCAGGAGA
AGCAAAGAGACGGAAGTATTCTACGAACTGGCTCATGAACTGCCCCTGCCCCACAATGTCAGTTCCCACCTGGACAAGG
CATCTATAATGCGCCTGGCAATCAGTTTCTTACGCACTCACAAGCTTCTGTCTTCAGTATGTGCCGACAACGAGAATGA
ACTAGAAGCAGATCAGCAGATGGACAACTTGTACCTGAAAGCTTTGGAGGGATTTATTGCCGTGGTGACACAGGATGGA
GACATGATCTTTTTGTCAGAGAATGTCAACAAATACATGGGTCTCACCCAGGTGGAATTAACTGGACACAGCATTTTTG
ACTTCACTCATCCATGTGATCATGAGGAAATTAGAGAGAATCTGAGTCTGAAAAATGGTCCAGGCTTTGGAAAGAAAAA
CAAGGAGATGTCAACTGAACGTGACTTCTTCATGAGGATGAAATGCACCGTTACTAACAGAGGCAGAACTGTTAACCTC
AAATCTGCCACATGGAAGGTTTTGCACTGCACTGGACAAGTTAAAGTGTACAACACTTGCCCTCCTCACACTTTGTGTG
GGTATAAAGAACCTCTTCTCACCTGCCTTATAATAATGTGTGAGCCTATTCAACATCCTTCAAACATTGATATCCCTCT
GGACAGCAAGACCTTCATGAGTCGCCATAGCATGGACATGAAATTCACCTACTGTGATGACAGAATAACAGAATTGATT
GGATATCACCCAGAGGAGTTGCTGGGCCGTTCAGTATATGAGTTCTACCATGCCTTGGACTCGGAGAACATGACCAAAA
GTCATCAGAACTTGTGTACAAAAGGTCAAGTAGTGACTGGCCAGTACCGTATGCTTGCCAAGCATGGTGGATACGTGTG
GCTGGAAACTCAAGGGACCGTCATTTACAACACGCGCAACCTACAGCCTCAGTGTATCATCTGTGTCAACTATGTGCTG
AGTGAAATTGAGAAGAATGATGTTGTCTTCTCTATGGACCAAACGGAATCGCTCTTCAAGCCTCACCTGTTGACAATAA
GCACTGCCTTTGAGAATGGGATCTCACGGAGGGATAAGAGTGACTTATTATTTACTAAGCTAAAAGAAGAACCGGAGGA
AGTTGCACAGCTGGCTCCAACACCTGGAGATGCCATTATTTCCCTGGATTTTGAACTCCATCCAGGGATACAGAAGTTT
GAGGAACCCCCTGACTATACCAGTGCTGTTTTGACACCAAACAAACCGTGGCCAGTAGAAGTGAAAAGCCATGCTGCTC
AAGGTGAAACGCTGACAATGCCATCCTTTACAATGCCTCAGATTCCACCTGGCAACAGTACTCCAAGTGCAAGCAGCAA
CAGTAGCTGTTCCACGCCAAACAGTCCAGAGGATTACTACACTTCTGTGGATGACGATCTTAAGATTGAGGTGATTGAA
AAACTCTTTGCCATGGACACAGAATCAAAAAGTCAGTGCAACTCCCAGACTGATTTCAATGAACTGGACCTTGAAACCT
TGGCTCCTTACATTCCTATGGATGGAGAAGATTTCCAGCTCAGCCCTATCTGCCAAGAAGAGCGTCCTCACTCTGAAAG
TGCACAAAATACCCAGCAGAATCTAAGTAGCATGAGTACCATTTTCCAACCTGTTGCTTCTGCTTCACAGAATCAGTTC
CTCCCAGAGAAATATTGCCCACAGCTATCAAATAAAAACATTAACCCTGGTCATGGGTCCCTATCATCTGTGTTCTTCA
ACAATATGAGTAGGTCATCGTTGCCACCATACCACAACCAAGCCAGCACTCCGCTGTCTTCGATGGGGGGTAGACCAAA
CACCCAGTGGCCACCTGATCCACCGTTAGAATATGTTCCTGCTAAATGGAGACTCATGGATAAATACTCAGGAACCCTA
TCAAGTTCCCCCTCAGGACCCCCAATACATTCTCCCAACATGCCCGTATATAAAAAAAGGCTGCTGGATGGTTTGGGGC
AACGAGGCATAGATATAAACCCAGCAAGAATTGCTTTGTCTAATAGTTTGAAGCTGAAGCGACAGTTGGATTATGAAGA
GCAGGCAATGCAACAGCTGACTGGGGGAGACCCATCTGCCATTAACCCATCTCAGTTAATGTGGAAGAGAATGAAATTT
CTCAAAGGGGAAAACTGTTCCTTGCTTACGGAGAAGAAGTCTCTCAGCACAAGTGTTCTTACTGATGAGTTTGTCTGCA
ACTCGAGAGGTCTGAGCCAACCAATGAATCAACTGCAGCTGCAGCAGCAACAGCAGCAACCCACCTGTGGCAGTCCTGG
TGAAAATCTGAAAGCAGGAGCGTTTTCCCCTCAGTTTTACAGTCCCCATTATCAGGACTATACTGTGCAGTCAGCTCAT
AAAGTGTCAGGTGTGACGAGTCGTCTGCTGGGGTCTTCCTATGAACCATATTTGCTGCCTGAGTTGACAAGATATGACT
GTGAGGTAAACGTCCCTGTTTTGGGCAGTTCCACGCTTCTGCAGGGCAGCGAACTGCTCAGAGCCCTGGACCAGACAAC
CTGAGCAATCCTGCAGTATTGGCCTATACTGTTCAAAACAGCTTCAGTTTTTAAATATATTTTTGCAAGTAGACGATTT
CTAATACCAATACACTTTTACAGGATTTTACATAGATATTGAATCTGTCCACGTTACCAAATAGTGGCCTTTTGAAGTT
ACTCACTTCTATTATTCATATTAAAGAAATACATCTACTGTATTTTCTCTATTCCAATTAAAGTGTTGGCGGCC
CitationNanka O, Valásek P, Dvoráková M, Grim M. Experimental hypoxia and embryonic angiogenesis. Dev Dyn. 2006 Mar;235(3):723-33.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AF212989).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
Arteries
Blood Vessels
Endocardium
Veins
Endothelial Cells
25-28
stage 28
  

Entry 5

GEISHA Idhif2alpha.Ota.2007Data SourcePublication
Complete cDNA Template Probeshow
AGCAAGACCTTCATGAGTCGCCATAGCATGGACATGAAATTCACCTACTGTGATGACAGAATAACAGAATTGATTGGAT
ACCACCCAGAAGAGTTGCTGGGCCGTTCAGCATATGAGTTCTACCATGCCTTGGACTCAGAGAACATGACCAAAAGTCA
TCAGAACTTGTGTACAAAAGGTCAAGTAGTGACTGGCCAGTACCGTATGCTTGCCAAGCATGGTGGATACGTGTGGCTG
GAAACTCAAGGGACCGTCATTTACAACACGCGCAACCTACAGCCTCAGTGTATCATCTGTGTCAACTATGTGCTGAGTG
AAATTGAGAAGAATGATATTGTCTTCTCTATGGACCAAACGGAATCGCTCTTCAAGCCACACCTGTTGACGATGAGCAG
TGCCTTTGAGAATGGGATCTCAGGGAGGGACAAGAGTGATTTATTGTTTACTAAGCTAAAAGAAGAACCGGAGGAACTT
GCACAACTGGCTCCAACACCTGGAGATGCCATTATTTCCCTGGATTTTGAACTCCATCCAGGGATACAGAAGTTTGAGG
AAGCCCCTGCCTATACGAGCGCTGTTTTGACACCAAACAAACCGTGGCCAGTAGAAGTGAAAAGCCATGCTGCTCAAGG
TGAAACGCTGACAATACCATCCTTTACAATGCCACAGATTGCACCTGGCAGCAGTACTCCAAGTGCAAGCAGCAACAGT
AGCTGTTCCACGCCAAACAGCCCGGAGGATTACTACACTTCTGTGGATGATGATCTTA
CitationOta K, Nagai H, Sheng G. Expression and hypoxic regulation of hif1alpha and hif2alpha during early blood and endothelial cell differentiation in chick. Gene Expr Patterns. 2007 Aug;7(7):761-6. Epub 2007 Jun 12.
Copyright"Reprinted from Gene Expression Patterns, Volume number 7, Ota K, Nagai H, Sheng G, Expression and hypoxic regulation of hif1alpha and hif2alpha during early blood and endothelial cell differentiation in chick,761-766. Copyright (2007), with permission from Elsevier". Copyright © (2007) Elsevier B.V. All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 5
stage 6
stage 6
Area Opaca
Epiblast
Extraembryonic
 
7-12
stage 7
stage 8
stage 8
stage 9
stage 9
stage 10
stage 12
stage 12
Area Opaca
Blood Islands
Early Endoderm
Epiblast
Extraembryonic
Surface Ectoderm
 
13-14
stage 14
stage 14
Area Opaca
Blood
Early Endoderm
Endoderm
Extraembryonic
Surface Ectoderm
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.43355

Mouse

EmageMGI:109169
EurexpressMGI:109169
MGI GXDMGI:109169

Frog

Xenbase981611

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-060607-11, ZDB-GENE-030131-4490
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