GEISHA - A Chicken Embryo Gene Expression Database
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NEUROD4
neuronal differentiation 4

Gene
Official SymbolNEUROD4
Official Full Nameneuronal differentiation 4
CGNC ID49575
also known asneurogenic differentiation factor 4|NeuroM protein|neurogenic differentiation 4
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205076
PolypeptideNP_990407
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.570
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human58158ENSG00000123307MIM:611635
Mouse11923ENSMUSG00000048015All phenotypic alleles (3):Targeted, knock-out(2) Targeted, other(1) MGI:108055
Xenopus100124310, 397714972703
Zebrafish266958ENSDARG00000003469ZDB-GENE-030730-1ZFIN:ZDB-GENE-030730-1
Gene Ontology
Molecular FunctionDNA binding, protein dimerization activity
Biological Processamacrine cell differentiation, positive regulation of cell differentiation, more...regulation of transcription, DNA-templated, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395959
Ensembl Gene
KEGGgga:395959

Entry 1

GEISHA IdNEUROD4.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTGGGGGGATGGCTTTAGTTC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGTCTCCAGGAATAAGGTCTGCGGcDNA Template Length642
Forward cDNA Template Probeshow
GGGGCACACTGCAGCTCCGGACCAAAATTCCTGGTGGGCTGGGTAAACCCTTTGCAGAGCATCTCCACGAAGGCTCTCC
TCTTCAGAGGGTCTGCCCCGGTTTCGAGCACCTCGGACAGAACCCAAATGTAATTTCTCGCCAACCCCAACGTCTCGAA
CTTGGACAGCTTCTGTGTTTTGGAGTAACAGGGCATCACCCTCCTCAGGTTGTACAGGGCATCGTTCAATTCGTGGATT
CCCCTGGGCTCCCCAACGTTGGCTTTCACCCGCCCAACCCCGGAACCCCTCCAACCGGGCCTTGGTCATCTTCTTCTTC
TTGGGCCCTCTTCTCTTCGGTTTCTCCCCATCATCCCCTTCCTCCTCTTCCTCCTCGATGCTGTCGTGCTCTTCATTCA
ACCCCGCCACCAACCCGAAAAGGTCCTGGCCTGCCGTTCTCTGCCTTCAGCTCATCCTTGGAAGCTCAGCGCGTCGTCC
ATCCAGCCCTGGGTGCCCACCAACTCTGCCATCTCCTTGGCTTTGGTGTACGTTCTCCTCATCTCTCAACTCTGTAACG
AGGGGGGACCGGAGATGTTAACCAAAGCCAGCAAGAACCCCCAGTCCATTAGGAACTAAAGCCATCCCCCCAAAAANNN
NNNNNNNNGTNTGCCCTTTTTTTCGACCCGCTCTTTTCCCTTTTCCGCTTCGCTTCCGTGGTCTCCCTCCTGTCTCCTC
CCTCTTTGTCGTCTTCCTCTCTCTCTTCTTCCCTCCTCTTGCCTCCTCTGTTTCTTCTCTGCTTGTCCTCCTTCTCTTT
CCTCTTCCCCTCCGCTTCCTCTCTGCCTGCCTTCTGTTCTCTTTTGTCTCTCCTCGTCTGCCTGCCTGTCCTTCAACCT
CTTCTTCTCTTTTCTTTCCTTCTTCTTGCGCCCTGCTTTCTCCTCTCTTTCCTTTTCTGTCGTCTCCTTCTGCTTTGCC
TTCCGCGCCGCGATCCCTCTTGTTCCTTCGCTCTCGCTCTCCTTGCTTTGTTTCCCCCCTCTCTCCTCTTCTCTTTCTC
TTCTCGGTCCTCGCCTCATGCTCTTTTGCCTGCCTGTCTTTCCTCTTGTTGTGCTCTGCCTGTCTCTTCCCTGTGTCTG
TCCTGTTCTCCCTCTCGTTCTCTTTCTGTCTTCTCATGCCTCGCCTTCTCTCTTCGCTCTCTCCCTGCTCTCTCTGGTC
TTCTCCTTGGTTTCCCTCCTCTGTTCCCCTTCTTGTGTGCCCGCTTTCTATGCATCACATCAATATCCATACCTTAACC
ATAACCTATTATATCTAACTAATACATACCACTACGATAATATTCACCAACTCCACACACAAANTAACACAACAGTGAC
TCATCATATCACCACTCTTATCGTAGATCACTTACTAGATTTAAATCTCTACTGACATTCTGTATACTAGGACTGACAC
CTTCTGCTTACTTTACTAGATCTACTTCCGAATATTATATTGCTAACTTTCTGAACTACCTACCTATTACCATCGTTAT
ATATCTTCACATACTACATATACTATAACTACAACTTCAACTATTTTCCTATTATTATATACTATAATACTACTATAAC
CATACTTA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Unlabeled
 
7-12
stage 8
stage 8
stage 9
stage 9
stage 10
stage 10
stage 11
stage 11
stage 11
stage 11
stage 12
stage 12
Forebrain
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Crest
Neural Plate/Tube
 
13-18
stage 14
stage 14
stage 15
stage 17
Hindbrain
Midbrain
Neural Crest
Neural Plate/Tube
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
 
19-24
stage 23
stage 24
Eye
Forebrain
Hindbrain
Midbrain
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
 
25
stage 25
Eye
Forebrain
Hindbrain
Midbrain
Nasal Placode/Nerve
Neural Plate/Tube
Spinal Cord
Spinal Ganglia and Nerves
 

Entry 2

GEISHA IdNeuroM.Abu-Elmagd.2001Data SourcePublication
Complete cDNA Template Probeshow
ACAGGAAGCAGTCGGTGCCTCTGGGGGGATGGCTTTAGTTCCTTATGGACTCGGTGCTCCTGCTGGCTTTGCTTAACAT
CTCCCGTCCCCCCTCGTTACAGAGCTGAGAGATGACGAAGACGTACACCAAAGCCAAGGAGATGGCAGAGCTGGTGGGC
ACCCAGGGCTGGATGGACGACGCGCTGAGCTCCAAGGATGAGCTGAAGGCAGAGAACGGCAGGCCAGGACCTTTCGGGT
TGGTGGCGGGCTTGAACGAAGAGCACGACAGCATCGAGGAGGAAGAGGAGGAAGAGGATGATGGGGAGAAGCCGAAGAG
AAGAGGGCCGAAGAAGAAGAAGATGACCAAGGCCAGGTTGGAGAGGTTCAGGGCTCGGCGGGTGAAAGCCAACGCTCGG
GAGCGCACGCGGATGCACGGACTGAACGATGCCCTGGACAACCTGAGGAGGGTGATGCCCTGCTACTCCAAAACACAGA
AGCTGTCCAAGATCGAGACGTTGAGGTTGGCGAGGAATTACATCTGGGCTCTGTCCGAGGTGCTCGAAACGGGGCAGAC
CCCGGAAGGGAAGAGCTTCGTGGAGATGCTCTGCAAAGGGTTATCCCAGCCCACCAGCAACCTGGTGGCCGGCTGCCTG
CAGCTGGGGCCGCAGACCTTATTCCTGGAGAAGCACGAGGAGAAAACCCCGGGCTGCGAGTCGGCCATTTCCAGCCACT
CCTTCACCTACCAGTCCCCGGGGCTGCCCAGCCCGCCCTACGGCTCCATGGAAACCCACCTGCTGCACCTCAAGCCCCC
CGCCTTCAAGAGTTTGGTGGATGCTTCTTTTGGGAACCCCCCCGACTGCACCACTCCCCCATACGAGGGTCCCCTCACG
CCGCCCCTGAGCATCAGTGGGAACTTCTCTTTGAAGCAGGATGGCTCTCCAGACCTGGATAAGCCCTACGCCTTCATGG
CTCACTACCCTTCGGTCAGCCTGGCCGGGGCACATGGACATCCCACCCACTTCCAAAACGCAGTGCCCCGTTATGAGAT
CCCCATAGACATGAGCTACGAGTCCTACCCTCACCACGTGGCCGGGCCTCAGCTCAACGCCATCTTCAACGAGTAGCGA
AGCGGG
CitationAbu-Elmagd M, Ishii Y, Cheung M, Rex M, Le Rouëdec D, Scotting PJ. cSox3 expression and neurogenesis in the epibranchial placodes. Dev Biol. 2001 Sep 15;237(2):258-69.
CopyrightCopyright © 2001 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205076).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
stage 18
stage 18
stage 18
Pharyngeal Arches and Clefts
Placcode
First Nodose Placode
Geniculate Placode
Petrosal Placode
Second Nodose Placode
Trigeminal Placode

Entry 3

GEISHA IdNEUROM.DiezdelCorral.2002Data SourcePublication
Complete cDNA Template Probeshow
ACAGGAAGCAGTCGGTGCCTCTGGGGGGATGGCTTTAGTTCCTTATGGACTCGGTGCTCCTGCTGGCTTTGCTTAACAT
CTCCCGTCCCCCCTCGTTACAGAGCTGAGAGATGACGAAGACGTACACCAAAGCCAAGGAGATGGCAGAGCTGGTGGGC
ACCCAGGGCTGGATGGACGACGCGCTGAGCTCCAAGGATGAGCTGAAGGCAGAGAACGGCAGGCCAGGACCTTTCGGGT
TGGTGGCGGGCTTGAACGAAGAGCACGACAGCATCGAGGAGGAAGAGGAGGAAGAGGATGATGGGGAGAAGCCGAAGAG
AAGAGGGCCGAAGAAGAAGAAGATGACCAAGGCCAGGTTGGAGAGGTTCAGGGCTCGGCGGGTGAAAGCCAACGCTCGG
GAGCGCACGCGGATGCACGGACTGAACGATGCCCTGGACAACCTGAGGAGGGTGATGCCCTGCTACTCCAAAACACAGA
AGCTGTCCAAGATCGAGACGTTGAGGTTGGCGAGGAATTACATCTGGGCTCTGTCCGAGGTGCTCGAAACGGGGCAGAC
CCCGGAAGGGAAGAGCTTCGTGGAGATGCTCTGCAAAGGGTTATCCCAGCCCACCAGCAACCTGGTGGCCGGCTGCCTG
CAGCTGGGGCCGCAGACCTTATTCCTGGAGAAGCACGAGGAGAAAACCCCGGGCTGCGAGTCGGCCATTTCCAGCCACT
CCTTCACCTACCAGTCCCCGGGGCTGCCCAGCCCGCCCTACGGCTCCATGGAAACCCACCTGCTGCACCTCAAGCCCCC
CGCCTTCAAGAGTTTGGTGGATGCTTCTTTTGGGAACCCCCCCGACTGCACCACTCCCCCATACGAGGGTCCCCTCACG
CCGCCCCTGAGCATCAGTGGGAACTTCTCTTTGAAGCAGGATGGCTCTCCAGACCTGGATAAGCCCTACGCCTTCATGG
CTCACTACCCTTCGGTCAGCCTGGCCGGGGCACATGGACATCCCACCCACTTCCAAAACGCAGTGCCCCGTTATGAGAT
CCCCATAGACATGAGCTACGAGTCCTACCCTCACCACGTGGCCGGGCCTCAGCTCAACGCCATCTTCAACGAGTAGCGA
AGCGGG
CitationDiez del Corral R, Breitkreuz DN, Storey KG., Onset of neuronal differentiation is regulated by paraxial mesoderm and requires attenuation of FGF signalling. Development. 2002 Apr;129(7):1681-91.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Storey
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205076.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-9
stage 7
stage 7
stage 8
stage 8
stage 8
stage 8
stage 8
stage 8
stage 9
stage 9
Neural Plate/Tube
 

Entry 4

GEISHA IdNEUROM.Bell.2008Data SourcePublication
Complete cDNA Template Probeshow
ACAGGAAGCAGTCGGTGCCTCTGGGGGGATGGCTTTAGTTCCTTATGGACTCGGTGCTCCTGCTGGCTTTGCTTAACAT
CTCCCGTCCCCCCTCGTTACAGAGCTGAGAGATGACGAAGACGTACACCAAAGCCAAGGAGATGGCAGAGCTGGTGGGC
ACCCAGGGCTGGATGGACGACGCGCTGAGCTCCAAGGATGAGCTGAAGGCAGAGAACGGCAGGCCAGGACCTTTCGGGT
TGGTGGCGGGCTTGAACGAAGAGCACGACAGCATCGAGGAGGAAGAGGAGGAAGAGGATGATGGGGAGAAGCCGAAGAG
AAGAGGGCCGAAGAAGAAGAAGATGACCAAGGCCAGGTTGGAGAGGTTCAGGGCTCGGCGGGTGAAAGCCAACGCTCGG
GAGCGCACGCGGATGCACGGACTGAACGATGCCCTGGACAACCTGAGGAGGGTGATGCCCTGCTACTCCAAAACACAGA
AGCTGTCCAAGATCGAGACGTTGAGGTTGGCGAGGAATTACATCTGGGCTCTGTCCGAGGTGCTCGAAACGGGGCAGAC
CCCGGAAGGGAAGAGCTTCGTGGAGATGCTCTGCAAAGGGTTATCCCAGCCCACCAGCAACCTGGTGGCCGGCTGCCTG
CAGCTGGGGCCGCAGACCTTATTCCTGGAGAAGCACGAGGAGAAAACCCCGGGCTGCGAGTCGGCCATTTCCAGCCACT
CCTTCACCTACCAGTCCCCGGGGCTGCCCAGCCCGCCCTACGGCTCCATGGAAACCCACCTGCTGCACCTCAAGCCCCC
CGCCTTCAAGAGTTTGGTGGATGCTTCTTTTGGGAACCCCCCCGACTGCACCACTCCCCCATACGAGGGTCCCCTCACG
CCGCCCCTGAGCATCAGTGGGAACTTCTCTTTGAAGCAGGATGGCTCTCCAGACCTGGATAAGCCCTACGCCTTCATGG
CTCACTACCCTTCGGTCAGCCTGGCCGGGGCACATGGACATCCCACCCACTTCCAAAACGCAGTGCCCCGTTATGAGAT
CCCCATAGACATGAGCTACGAGTCCTACCCTCACCACGTGGCCGGGCCTCAGCTCAACGCCATCTTCAACGAGTAGCGA
AGCGGG
CitationBell D, Streit A, Gorospe I, Varela-Nieto I, Alsina B, Giraldez F. Spatial and temporal segregation of auditory and vestibular neurons in the otic placode. Dev Biol. 2008 Oct 1;322(1):109-20. doi: 10.1016/j.ydbio.2008.07.011. Epub 2008 Jul 19.
CopyrightCopyright © 2013 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205076.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Ear/Otic Placode
 
13-18
stage 13
stage 16
stage 17
stage 18
stage 18
Ear/Otic Placode
 
19-24
stage 21
stage 24
stage 24
stage 24
Ear/Otic Placode
 

Entry 5

GEISHA IdNEUROD4.Ware.2014Data SourcePublication
Complete cDNA Template Probeshow
ACAGGAAGCAGTCGGTGCCTCTGGGGGGATGGCTTTAGTTCCTTATGGACTCGGTGCTCCTGCTGGCTTTGCTTAACAT
CTCCCGTCCCCCCTCGTTACAGAGCTGAGAGATGACGAAGACGTACACCAAAGCCAAGGAGATGGCAGAGCTGGTGGGC
ACCCAGGGCTGGATGGACGACGCGCTGAGCTCCAAGGATGAGCTGAAGGCAGAGAACGGCAGGCCAGGACCTTTCGGGT
TGGTGGCGGGCTTGAACGAAGAGCACGACAGCATCGAGGAGGAAGAGGAGGAAGAGGATGATGGGGAGAAGCCGAAGAG
AAGAGGGCCGAAGAAGAAGAAGATGACCAAGGCCAGGTTGGAGAGGTTCAGGGCTCGGCGGGTGAAAGCCAACGCTCGG
GAGCGCACGCGGATGCACGGACTGAACGATGCCCTGGACAACCTGAGGAGGGTGATGCCCTGCTACTCCAAAACACAGA
AGCTGTCCAAGATCGAGACGTTGAGGTTGGCGAGGAATTACATCTGGGCTCTGTCCGAGGTGCTCGAAACGGGGCAGAC
CCCGGAAGGGAAGAGCTTCGTGGAGATGCTCTGCAAAGGGTTATCCCAGCCCACCAGCAACCTGGTGGCCGGCTGCCTG
CAGCTGGGGCCGCAGACCTTATTCCTGGAGAAGCACGAGGAGAAAACCCCGGGCTGCGAGTCGGCCATTTCCAGCCACT
CCTTCACCTACCAGTCCCCGGGGCTGCCCAGCCCGCCCTACGGCTCCATGGAAACCCACCTGCTGCACCTCAAGCCCCC
CGCCTTCAAGAGTTTGGTGGATGCTTCTTTTGGGAACCCCCCCGACTGCACCACTCCCCCATACGAGGGTCCCCTCACG
CCGCCCCTGAGCATCAGTGGGAACTTCTCTTTGAAGCAGGATGGCTCTCCAGACCTGGATAAGCCCTACGCCTTCATGG
CTCACTACCCTTCGGTCAGCCTGGCCGGGGCACATGGACATCCCACCCACTTCCAAAACGCAGTGCCCCGTTATGAGAT
CCCCATAGACATGAGCTACGAGTCCTACCCTCACCACGTGGCCGGGCCTCAGCTCAACGCCATCTTCAACGAGTAGCGA
AGCGGG
CitationWare M, Hamdi-Rozé H and Dupé V (2014) Notch signaling and proneural genes work together to control the neural building blocks for the initial scaffold in the hypothalamus. Front Neuroanat. 2014 Dec 2;8:140. doi: 10.3389/fnana.2014.00140.
CopyrightCopyright © 2014 Ware, Hamdi-Rozé and Dupé
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (Acc. # NM_205076.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Hypothalamus
 

Entry 6

GEISHA IdNeuroM.Vieceli.2013Data SourcePublication
Complete cDNA Template Probeshow
TTCCTGGAGAAGCACGAGGAGAAAACCCCGGGCTGCGAGTCGGCCATTTCCAGCCACTCCTTCACCTACCAGTCCCCGG
GGCTGCCCAGCCCGCCCTACGGCTCCATGGAAACCCACCTGCTGCACCTCAAGCCCCCCGCCTTCAAGAGTTTGGTGGA
TGCTTCTTTTGGGAACCCCCCCGACTGCACCACTCCCCCATACGAGGGTCCCCTCACGCCGCCCCTGAGCATCAGTGGG
AACTTCTCTTTGAAGCAGGATGGCTCTCCAGACCTGGATAAGCCCTACGCCTTCATGGCTCACTACCCTTCGGTCAGCC
TGGCCGGGGCACATGGACATCCCACCCACTTCCAAAACGCAGTGCCCCGTTATGAGATCCCCATAGACATGAGCTACGA
GTCCTACCCTCACCACGTGGCCGGGCCTCAGCTCAACGCCATCTTCAACGAGTAGCGA
CitationVieceli FM, Simões-Costa M, Turri JA, Kanno T, Bronner M, Yan CY. The transcription factor chicken Scratch2 is expressed in a subset of early postmitotic neural progenitors. Gene Expr Patterns. 2013 Jun-Jul;13(5-6):189-96. DOI: 10.1016/j.gep.2013.03.004.
CopyrightCopyright © 2013 Elsevier B.V.
CommentsAuthors indicated the probe for NeuroM was synthesized from 654–1106 nucleotides of NCBI NM_205076. Above sequence was extracted from NCBI (NM_205076.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
stage 25
Spinal Cord
Spinal Ganglia and Nerves
 
all
 
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.570

Mouse

EmageMGI:108055
EurexpressMGI:108055
MGI GXDMGI:108055

Frog

Xenbase972703

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030730-1
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