GEISHA - A Chicken Embryo Gene Expression Database
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NHLH1
nescient helix-loop-helix 1

Gene
Official SymbolNHLH1
Official Full Namenescient helix-loop-helix 1
CGNC ID48953
also known ashelix-loop-helix protein 1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204121
PolypeptideNP_989452
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.141
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly31397FBgn0011277
Human4807ENSG00000171786MIM:162360
Mouse18071ENSMUSG00000051251All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:98481
Xenopus100125788, 495280, 398086989789
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene373910
Ensembl Gene
KEGGgga:373910

Entry 1

GEISHA IdNHLH1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAACTTGCTGGGCTGAGGGTTTG
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGATGCGAAGAGGGCGTGTAAAGGcDNA Template Length801
Forward cDNA Template Probeshow
TAGGGGTTNCACGCCTCACTCTGGCTCAGAGCTGAAGGGTAGTGCAGGGTGGGGATGCACAGCTCTGGGATGAGGTGCT
CCCAGAGTGGGATGCATTGGGGAGGTGGGTGTGCAGTGAAGGGGCTCAGCCAGGCCCCAGGTGACAGCAGCTCCAGCCA
GGCATAGGTCAGTATGGCCTTGGGCACCATGCAGCTGTCCATGGTGTAGTGTGGCCGGATCCTGCCCTACGTCTGCAGC
ATGCTGAGTACTCTGTGCCACACCAGGATGGAGCTGGAGAGGCTTCTCTGTGCACAGGGGAGAGCGCTGGGAAGGTGGG
GTGGTCCCCAGGCGGTGCCCTGTGGCTGGAGGGGCAGATGGATGGGACTGTGGGCTGCTTGGTGCCTCATGGGCACAGT
CTGTGGCTTGTAGAAAAGAGGTGACATGGGTGAAGGTGGACCANGTCGTGGCTGTGGGGACAGATGGACAGATGTGGGC
TCANGATCCCATTGGCACTATCANCGGGACATGCANCANAANGACANACANACNTTGGGAACANACNGGCTTCANGCAN
CANGTCCANCANGACANACANACATCTGATGGGCTGAACANCCCNCCTGGCTCANGCANCACNNACANACANATGNATG
TGNNCTTGNTGNTGNNNANATNCANTTTATNNATA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
Unlabeled
 
7-12
stage 8
stage 8
stage 8
stage 8
stage 9
stage 9
stage 9
stage 9
stage 9
stage 9
stage 12
stage 12
stage 12
Endoderm
Foregut
Hindbrain
Lateral Plate Mesoderm
Neural Crest
Neural Plate/Tube
 
13-18
stage 14
stage 14
stage 14
stage 14
stage 17
Hindbrain
Midbrain
Neural Crest
Neural Plate/Tube
Oral Pharynx
Spinal Cord
 
19-24
stage 22
stage 24
stage 24
Hindbrain
Midbrain
Nasal Placode/Nerve
Spinal Cord
Spinal Ganglia and Nerves
 
25
stage 25
Eye
Forebrain
Hindbrain
Midbrain
Nasal Placode/Nerve
Spinal Cord
Spinal Ganglia and Nerves
 

Entry 2

GEISHA IdNHLH1.Ratie.2013Data SourcePublication
Complete cDNA Template Probeshow
CCTGCATGGTCCTTGAGCTCCTGCCCTATTCGTGGCATGCTCGGGCCCCAAGGATCCCGGGGCTCATCCCACCGAGCAG
GTCGCCAACTTTCTGCCTCCTCCATGGACGGATGAGCAAGCAGTTCCCGGATTACTTTGGGCTTCAGGAAGAGGAAAGC
TGGAGCCTGGGAATGGTCGTCAACTCAGGGTTTATTGCCGTCGCCCCTCCAGCAAGAAAAAGGGAAGCACTCTGAAGTC
GTGCAGAGACGCCGTGTGATGAGGAGGAGGAGGAGAGCCAGTGGGGCAGTGCTGTGAGCAAGAGGCCCTGTCCCAGTGG
ATTCGCTTCGCCTCACTCCACCCCCAGCCCAGCATCTGTCCATCTGTCCATCCATCCATCCGTCCATCCATCCGCACCC
ACCATGCTCAACTCGGAGCAGACAGAGCTCGACCTCCCGCCCGCGCACTCCGAGCCCGAATCCGTCTTCAGCGACTGCG
GCCGCGTGGGCGGCGCGGAGGAGTCCGGCGTCGCTTTGTGCCCTCAGCCCCGCGGGGCCGAGCAGGCAGAGGCGGTGAA
GAAGGACCTGCAGCACCTGAGCCGGGAGGAGCGGCGGCGGCGGCGGCGAACCACGGCCAAGTACCGCACAGCCCACGCC
ACGAGGGAACGCATCCGCGTGGAAGCCTTCAACATGGCCTTCGCCGAGCTGCGCAAGCTGCTGCCCACGCTGCCGCCCG
ACAAGAAGCTCTCCAAGATTGAGATCCTTCGCCTGGCTATCTGCTACATCTCCTACCTGAACCACGTGCTGGATGTCTG
AGCCGCCCAGCCTGTGTCTGTTTGTCTGTCCGTCCACCCGTCCGTCACCAACCCAACCAACTTGCTGGGCTGAGGGTTT
GAGTATGTCTGGTCCAGATGCGACCCAACAATGCTGCACCTGTATCTGTCTGACTGCTTGGATGGACTGAATCCCATCT
GCCTGCTCTGCCTCTATCCATAAACTGCATCTCCCCACCACCAAGCCCACATCCATCTGTCTGTCCGTGCTGCCTGAGC
CAGGCGGGCTGTTCAGCCCATCAGATGTCTGTCTGTCCTGCTGGACCTGCTGCCTGAAGCCCGTCTGTTCCCAACGTCT
GTCTGTCCTTCTGCTGCATGTCCCGCTGATAGTGCCAATGGGATCCTGAGCCCACATCTGTCCATCTGTCCCCACAGCC
ACGACCTGGTCCACCTTCACCCATGTCACCTCTTTTCTACAAGCCACAGACTGTGCCCATGAGGCACCAAGCAGCCCAC
AGTCCCATCCATCTGCCCCTCCAGCCACAGGGCACCGCCTGGGGACCACCCCACCTTCCCAGCGCTCTCCCCTGTGCAC
AGAGAAGCCTCTCCAGCTCCATCCTGGTGTGGCACAGAGTACTCAGCATGCTGCAGACGTAGGGCAGGATCCGGCCACA
CTACACCATGGACAGCTGCATGGTGCCCAAGGCCATACTGACCTATGCCTGGCTGGAGCTGCTGTCACCTGGGGCCTGG
CTGAGCCCCTTCACTGCACACCCACCTCCCCAATGCATCCCACTCTGGGAGCACCTCATCCCAGAGCTGTGCATCCCCA
CCTGCACTACCCTCAGCTCTGAGCAGAGTGAGCGTGGAACCCCTAGCCCTTTACACGCCCTCTTCGCATCAATATCCCT
GACAGCCCCAGAGCAATCTTCATACCCCACCTCTTCCTCTGTCTCCCCTGTTACTTTCTAAGAGTTAATTTTGCACTGG
CGGTGGCAGGAGCACGAGCAGAGCTCCATGGGGACCGGGACAGAGCAGAAAGTGCCTGCTGTGCCCAAAGGCAGTGTGC
TGCTCACTGCAGGGTGGAATATGGCCCAACTCCATCCCCGTCCTGGCACTGCCCACAGCTCCAGACCCCATCTCCCTGC
ATCCCCAGAGCAGCCCACATCCCATGGGACGTGCTCGGGGATGTGGCATCCCCAAGGGACACGGACAGAGCAGGGCAGC
CCACCCGTCCCCTCCACTCAGCCCACGGCCCTGCGCCACGAGGATATTTATTTGAATTAATTTTATTGATAAATGTTAT
TATTTATTTGCTGTGTTGTGCACTTTTCGGAAAAGAAACCTAGGAAGCAAACAACAAACAGAAACAACCACGGTGGAAA
GCAGCCCAACCCACCCCTGTGTGCCCCAGCTTGCATTTCGTCTTGGCTGTTCGGACTGTGTGAGGATTTATTATTTATG
AGTTCACGAGGAAGTCGGGGAGGGGGAAATGAATTAAACTGCCAGCAAAAGAGATCTTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
CitationLeslie Ratié, Michelle Ware, Frédérique Barloy-Hubler, Hélène Romé, Isabelle Gicquel, Christèle Dubourg, Véronique David and Valérie Dupé. Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development. Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25.
Copyright© 2013 Ratié et al.; licensee BioMed Central Ltd.
CommentsThe sequence below was obtained from NCBI (acc # NM_204121.1) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-15
stage 15
stage 15
stage 15
stage 15
Hypothalamus
Midbrain
left embryo = control vehicle, DMSO; right embryo = DAPT-treated

Entry 3

GEISHA IdNHLH1.Ware.2014Data SourcePublication
Complete cDNA Template Probeshow
CCTGCATGGTCCTTGAGCTCCTGCCCTATTCGTGGCATGCTCGGGCCCCAAGGATCCCGGGGCTCATCCCACCGAGCAG
GTCGCCAACTTTCTGCCTCCTCCATGGACGGATGAGCAAGCAGTTCCCGGATTACTTTGGGCTTCAGGAAGAGGAAAGC
TGGAGCCTGGGAATGGTCGTCAACTCAGGGTTTATTGCCGTCGCCCCTCCAGCAAGAAAAAGGGAAGCACTCTGAAGTC
GTGCAGAGACGCCGTGTGATGAGGAGGAGGAGGAGAGCCAGTGGGGCAGTGCTGTGAGCAAGAGGCCCTGTCCCAGTGG
ATTCGCTTCGCCTCACTCCACCCCCAGCCCAGCATCTGTCCATCTGTCCATCCATCCATCCGTCCATCCATCCGCACCC
ACCATGCTCAACTCGGAGCAGACAGAGCTCGACCTCCCGCCCGCGCACTCCGAGCCCGAATCCGTCTTCAGCGACTGCG
GCCGCGTGGGCGGCGCGGAGGAGTCCGGCGTCGCTTTGTGCCCTCAGCCCCGCGGGGCCGAGCAGGCAGAGGCGGTGAA
GAAGGACCTGCAGCACCTGAGCCGGGAGGAGCGGCGGCGGCGGCGGCGAACCACGGCCAAGTACCGCACAGCCCACGCC
ACGAGGGAACGCATCCGCGTGGAAGCCTTCAACATGGCCTTCGCCGAGCTGCGCAAGCTGCTGCCCACGCTGCCGCCCG
ACAAGAAGCTCTCCAAGATTGAGATCCTTCGCCTGGCTATCTGCTACATCTCCTACCTGAACCACGTGCTGGATGTCTG
AGCCGCCCAGCCTGTGTCTGTTTGTCTGTCCGTCCACCCGTCCGTCACCAACCCAACCAACTTGCTGGGCTGAGGGTTT
GAGTATGTCTGGTCCAGATGCGACCCAACAATGCTGCACCTGTATCTGTCTGACTGCTTGGATGGACTGAATCCCATCT
GCCTGCTCTGCCTCTATCCATAAACTGCATCTCCCCACCACCAAGCCCACATCCATCTGTCTGTCCGTGCTGCCTGAGC
CAGGCGGGCTGTTCAGCCCATCAGATGTCTGTCTGTCCTGCTGGACCTGCTGCCTGAAGCCCGTCTGTTCCCAACGTCT
GTCTGTCCTTCTGCTGCATGTCCCGCTGATAGTGCCAATGGGATCCTGAGCCCACATCTGTCCATCTGTCCCCACAGCC
ACGACCTGGTCCACCTTCACCCATGTCACCTCTTTTCTACAAGCCACAGACTGTGCCCATGAGGCACCAAGCAGCCCAC
AGTCCCATCCATCTGCCCCTCCAGCCACAGGGCACCGCCTGGGGACCACCCCACCTTCCCAGCGCTCTCCCCTGTGCAC
AGAGAAGCCTCTCCAGCTCCATCCTGGTGTGGCACAGAGTACTCAGCATGCTGCAGACGTAGGGCAGGATCCGGCCACA
CTACACCATGGACAGCTGCATGGTGCCCAAGGCCATACTGACCTATGCCTGGCTGGAGCTGCTGTCACCTGGGGCCTGG
CTGAGCCCCTTCACTGCACACCCACCTCCCCAATGCATCCCACTCTGGGAGCACCTCATCCCAGAGCTGTGCATCCCCA
CCTGCACTACCCTCAGCTCTGAGCAGAGTGAGCGTGGAACCCCTAGCCCTTTACACGCCCTCTTCGCATCAATATCCCT
GACAGCCCCAGAGCAATCTTCATACCCCACCTCTTCCTCTGTCTCCCCTGTTACTTTCTAAGAGTTAATTTTGCACTGG
CGGTGGCAGGAGCACGAGCAGAGCTCCATGGGGACCGGGACAGAGCAGAAAGTGCCTGCTGTGCCCAAAGGCAGTGTGC
TGCTCACTGCAGGGTGGAATATGGCCCAACTCCATCCCCGTCCTGGCACTGCCCACAGCTCCAGACCCCATCTCCCTGC
ATCCCCAGAGCAGCCCACATCCCATGGGACGTGCTCGGGGATGTGGCATCCCCAAGGGACACGGACAGAGCAGGGCAGC
CCACCCGTCCCCTCCACTCAGCCCACGGCCCTGCGCCACGAGGATATTTATTTGAATTAATTTTATTGATAAATGTTAT
TATTTATTTGCTGTGTTGTGCACTTTTCGGAAAAGAAACCTAGGAAGCAAACAACAAACAGAAACAACCACGGTGGAAA
GCAGCCCAACCCACCCCTGTGTGCCCCAGCTTGCATTTCGTCTTGGCTGTTCGGACTGTGTGAGGATTTATTATTTATG
AGTTCACGAGGAAGTCGGGGAGGGGGAAATGAATTAAACTGCCAGCAAAAGAGATCTTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
CitationWare M, Hamdi-Rozé H and Dupé V (2014) Notch signaling and proneural genes work together to control the neural building blocks for the initial scaffold in the hypothalamus. Front Neuroanat. 2014 Dec 2;8:140. doi: 10.3389/fnana.2014.00140.
CopyrightCopyright © 2014 Ware, Hamdi-Rozé and Dupé
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence was obtained from NCBI (Acc. # NM_204121.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
stage 11
Hypothalamus
 

Entry 4

GEISHA IdNHLH1.Ratie.2014Data SourcePublication
Complete cDNA Template Probeshow
CCTGCATGGTCCTTGAGCTCCTGCCCTATTCGTGGCATGCTCGGGCCCCAAGGATCCCGGGGCTCATCCCACCGAGCAG
GTCGCCAACTTTCTGCCTCCTCCATGGACGGATGAGCAAGCAGTTCCCGGATTACTTTGGGCTTCAGGAAGAGGAAAGC
TGGAGCCTGGGAATGGTCGTCAACTCAGGGTTTATTGCCGTCGCCCCTCCAGCAAGAAAAAGGGAAGCACTCTGAAGTC
GTGCAGAGACGCCGTGTGATGAGGAGGAGGAGGAGAGCCAGTGGGGCAGTGCTGTGAGCAAGAGGCCCTGTCCCAGTGG
ATTCGCTTCGCCTCACTCCACCCCCAGCCCAGCATCTGTCCATCTGTCCATCCATCCATCCGTCCATCCATCCGCACCC
ACCATGCTCAACTCGGAGCAGACAGAGCTCGACCTCCCGCCCGCGCACTCCGAGCCCGAATCCGTCTTCAGCGACTGCG
GCCGCGTGGGCGGCGCGGAGGAGTCCGGCGTCGCTTTGTGCCCTCAGCCCCGCGGGGCCGAGCAGGCAGAGGCGGTGAA
GAAGGACCTGCAGCACCTGAGCCGGGAGGAGCGGCGGCGGCGGCGGCGAACCACGGCCAAGTACCGCACAGCCCACGCC
ACGAGGGAACGCATCCGCGTGGAAGCCTTCAACATGGCCTTCGCCGAGCTGCGCAAGCTGCTGCCCACGCTGCCGCCCG
ACAAGAAGCTCTCCAAGATTGAGATCCTTCGCCTGGCTATCTGCTACATCTCCTACCTGAACCACGTGCTGGATGTCTG
AGCCGCCCAGCCTGTGTCTGTTTGTCTGTCCGTCCACCCGTCCGTCACCAACCCAACCAACTTGCTGGGCTGAGGGTTT
GAGTATGTCTGGTCCAGATGCGACCCAACAATGCTGCACCTGTATCTGTCTGACTGCTTGGATGGACTGAATCCCATCT
GCCTGCTCTGCCTCTATCCATAAACTGCATCTCCCCACCACCAAGCCCACATCCATCTGTCTGTCCGTGCTGCCTGAGC
CAGGCGGGCTGTTCAGCCCATCAGATGTCTGTCTGTCCTGCTGGACCTGCTGCCTGAAGCCCGTCTGTTCCCAACGTCT
GTCTGTCCTTCTGCTGCATGTCCCGCTGATAGTGCCAATGGGATCCTGAGCCCACATCTGTCCATCTGTCCCCACAGCC
ACGACCTGGTCCACCTTCACCCATGTCACCTCTTTTCTACAAGCCACAGACTGTGCCCATGAGGCACCAAGCAGCCCAC
AGTCCCATCCATCTGCCCCTCCAGCCACAGGGCACCGCCTGGGGACCACCCCACCTTCCCAGCGCTCTCCCCTGTGCAC
AGAGAAGCCTCTCCAGCTCCATCCTGGTGTGGCACAGAGTACTCAGCATGCTGCAGACGTAGGGCAGGATCCGGCCACA
CTACACCATGGACAGCTGCATGGTGCCCAAGGCCATACTGACCTATGCCTGGCTGGAGCTGCTGTCACCTGGGGCCTGG
CTGAGCCCCTTCACTGCACACCCACCTCCCCAATGCATCCCACTCTGGGAGCACCTCATCCCAGAGCTGTGCATCCCCA
CCTGCACTACCCTCAGCTCTGAGCAGAGTGAGCGTGGAACCCCTAGCCCTTTACACGCCCTCTTCGCATCAATATCCCT
GACAGCCCCAGAGCAATCTTCATACCCCACCTCTTCCTCTGTCTCCCCTGTTACTTTCTAAGAGTTAATTTTGCACTGG
CGGTGGCAGGAGCACGAGCAGAGCTCCATGGGGACCGGGACAGAGCAGAAAGTGCCTGCTGTGCCCAAAGGCAGTGTGC
TGCTCACTGCAGGGTGGAATATGGCCCAACTCCATCCCCGTCCTGGCACTGCCCACAGCTCCAGACCCCATCTCCCTGC
ATCCCCAGAGCAGCCCACATCCCATGGGACGTGCTCGGGGATGTGGCATCCCCAAGGGACACGGACAGAGCAGGGCAGC
CCACCCGTCCCCTCCACTCAGCCCACGGCCCTGCGCCACGAGGATATTTATTTGAATTAATTTTATTGATAAATGTTAT
TATTTATTTGCTGTGTTGTGCACTTTTCGGAAAAGAAACCTAGGAAGCAAACAACAAACAGAAACAACCACGGTGGAAA
GCAGCCCAACCCACCCCTGTGTGCCCCAGCTTGCATTTCGTCTTGGCTGTTCGGACTGTGTGAGGATTTATTATTTATG
AGTTCACGAGGAAGTCGGGGAGGGGGAAATGAATTAAACTGCCAGCAAAAGAGATCTTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
CitationRatié L, Ware M, Jagline H, David V and Dupé V (2014) Dynamic expression of Notch-dependent neurogenic markers in the chick embryonic nervous system. Front. Neuroanat. 8:158. doi: 10.3389/fnana.2014.00158
CopyrightCopyright © 2014 Ratié, Ware, Jagline, David and Dupé.
CommentsThe sequence below was obtained from NCBI (acc # NM_204121.1) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 12
Peripheral Nervous System
Rhombomeres
 
13-18
stage 14
stage 14
stage 14
stage 15
stage 16
stage 16
stage 17
stage 17
stage 17
stage 18
stage 18
stage 18
stage 18
stage 18
Cranial Nerve
Cranial PNS
Mesencephalon
Nasal Placode/Nerve
Peripheral Nervous System
Rhombomeres
Sensory Organs
Spinal Cord
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
control - shows normal expression
olfactory epithelium (OE)
19-22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
Cranial PNS
Ear/Otic Placode
Mesencephalon
Peripheral Nervous System
Rhombomeres
Spinal Ganglia and Nerves
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.141

Mouse

EmageMGI:98481
EurexpressMGI:98481
MGI GXDMGI:98481

Frog

Xenbase989789

Fruit Fly

BDGPFBgn0011277

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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