GEISHA - A Chicken Embryo Gene Expression Database
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NKX6-3
NK6 homeobox 3

Gene
Official SymbolNKX6-3
Official Full NameNK6 homeobox 3
CGNC ID13582
also known ashomeobox protein Nkx-6.3|NK6 transcription factor related, locus 3, NK6 homeobox 3 , NK6.3
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_428808
PolypeptideXP_428808
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse74561ENSMUSG00000063672All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2) MGI:1921811
Xenopus100489301, 100101319478608
Zebrafish558978ENSDARG00000060529ZDB-GENE-070810-7ZFIN:ZDB-GENE-070810-7
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene431254
Ensembl GeneENSGALG00000018503
KEGGgga:431254

Entry 1

GEISHA IdNKX6-3.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCCCACAGCGACTCCAAACAG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGTCCCAGGTGCTCAGCCACTATGcDNA Template Length607
Forward cDNA Template Probeshow
AGTCATCAGGATGCATCAGGGTACATCATGGCAGGAGATGTCCTTTTACGGCAGCTGGAATCTTGATACTCGTCCCGTA
ATCCCCCCCCCAGGAGGACTGGGTGATACTCTTCATGCCTCGGTGTCATAGGTGTGCCCGCATTTGTACCTGGAGCCCC
GCACTGCGCTGCGCACGACGAGGAAGGTTCCCGGGCACTCGTCTTCCGTGATTTGGAGCTGCCCCTTCCGTAACCGAGA
CCTTCGCACTGTGTACTCTGGTTAAGCACGAGGTGAATATGCCAGCCGTGTTGCGCTGTGGACCTGGCAGTGCCTTTGG
TCTGCTCACATGTCTTGTCCGCATCCAAGATGTAATGTCTGTGTGCAGGTTGGACGCGTGTGCTTCTTCATGTGTAGGG
TGTCGGACACGTGTTCATCGGGGCCACCGGTGCTGGCGGTTGACCGTGACAGTCGGCTGCCTCTGACCCGCAGCTTCTG
CCCCGCGACACATCCTCGGTGCCGGATTTAGGCAAGGCCCCCACCTGTCTGCTGTAATAGACACCTGGTGACCTTTTTC
CGTTACTTCCACCTGTGTGGGGTTAGCTGGGAACGAGGCTGTTGTTTGGAGTCCCTAATTACACCCCTCCCTTAATGCC
AGCATTTATTATGTGCCATGGGGCTAGACCTCTTTGCTAAATGTCCTTATAGTCGGGTAACCGATATTGCGGTGGTCCC
CGTCCTGTCGTGGGTCTTTAGGTAAATTCATGCTTTCTCTCTTGTTTCTTTTATCTTTTTTCCCGGAATTATATATTTT
GTTATACACAATATCCTGTTTGTGTTTTGATTAAGATATCCTTTTTTCTACTCATTTCGTTTTACGGGTTAGTGTGTTG
TTGTGTTTACACCTCTCTATTGAGAATAATGAGTACCTCGTTTCTCTTTCCCCCCTTGGGAGTCGCGTAACTGCATTTT
GCTGTGCTCTTCCTCACATAATTCTTGTTTGTTTAGACCTTCACCCTTCGCTGTACTTTTTCTATAGTAAATATTTATG
TTGTCCATTCCATGCTGTTTTCTTTCTCTTCTTTTGTTTGTGGTAGTCTAATCGACTTCTCACGTAATTCTTTTATTTT
TAAGATTTTAATATTTAATATTGTGCACTCTATCCCCCAGTTCTCTTTAACGTAATTGGTAACTTTGTATGTATATATC
AGCATTCTCGTTTATCCACCTTTATTTGTTGTGTAATTTCTACTTTTTATTTGTACTTTCTTATTAAGTTCATGTTCTT
ATTTTTTGATGTAACTCATCTGTTTTAANATTGTTGTTCTTTATTTCTGTATTCTGTGGTTATTCTCTTTTGTACTATA
TCTTGCTCTGCTTCTTTTGTTTATATTTTTTCAGTAATGCTTATCTGTCTCATGTGTCATTTGTACAGTTCTGCGTTCT
ACNACTTACTCGAGGACTGATTTCTGCTATTTCGTAGTGATACTACCTTCTCTTTATGCATCGTACTTAGCTTACGTAG
TGTTGAGTGCATCTGTGCTTCTACCTCTCACGTACACATCTGTACATACTCACACTTCGATCATTGAGTCNATCTCTTA
TATCTATACTANCTGTCGACGATGATATCGTCTGTTTGAGCTGTTTATCGACGATGCAAGTCTCGCATATGTCTGTTTC
ATGTTGTTGCACCTCTTATGGAAGTCACTGTCGTGTTGTAGTTANTTTAGTCAACTCAGAATTC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Endoderm
Trapping in neural tube
13-18
stage 18
Endoderm
Neural Plate/Tube
Pancreas
Spinal Cord
Stomach
 
19-24
stage 19
stage 22
stage 22
stage 24
stage 24
stage 24
stage 24
Endoderm
Neural Plate/Tube
Pancreas
Spinal Cord
Stomach
 
25
stage 25
stage 25
Endoderm
Eye
Pancreas
Spinal Cord
Stomach
 

Entry 2

GEISHA IdNKX6-3.Pedersen.2005Data SourcePublication
Complete cDNA Template Probeshow
ATGGACGCCAACCTGCCAGGCACCTTCCTGCTCAGCGGCCCTTCACTGGCCCCCTTCCCTGAGGCCAAGGCACCTGTCT
GCCAGTACTCGGTGCAGAGCTCTTTCTACAAGCTGGGTCCCCCCGGGCTGGGTGCCCAGCTGGCTGCCGGCACCCCACA
CGGCATCTCCGACATCCTCGGCCGGCCCACAGCGACTCCAAACAGCAGCCTCCTGCCCAGCTACCCCCACACAGGTGGA
TTTAATGGACTGAGCTCCCCAGGCGTCTATTATGGGCCGCAGGTGGGGGCCCTCCCTAAAGCCAGCAGCGATTATGTGC
CGCGGGGCAGGAGCTGCTGGGCAGAGGCACCCGACTGGCAGGGCAGCCGGCAGTGCGGTGGCCCCCCTGCACACCTGAC
TGACAGCCTGCACAAGAAGAAGCACACGCGTCCAACCTTCACAGGGCATCAGATCTTCGCTCTGGAGAAGACATTTGAG
CAGACCAAGTACCTGGCAGGGCCAGAGCGGGCACGGCTGGCATATTCCCTCGGCATGACTGAGTCCCAGGTGAAGGTTT
GGTTCCAGAACCGGCGCACCAAATGGAGGAAGAAGAGTGCCCTGGAGCCCTCCTCCTCCTCGCAGCGGGTGGGGGGCTC
CAGTGGAGAGCGGGCAGCCTCTGAGACCGAGGATGATGAGTACAACAAGCCCCTGGACCCTGACTCGGATGATGAGAAG
ATCCGGCTGCTGCTGAGGAAGCACCGTGCAGCTTTCTCGGTGCTGGGGCTGGGCACACATAGTGGCTGAGCACCTGGGA
ATGGGTACTGCTGTGCCCCCACTGCAGCTCCTGCCCGGGGCTCAGGGTCTGGGAACAGCAGCAGTGAAATAAAGGCCCC
TGTCCCAGCACTTATTACATGGGTCTGCAATGCTGGCTGCCTCAGAGGCTGGGCTGGGAAGGGGCTGAGGCTGGGGGGC
CATGTATGGGGCAGAAAGGTCCCCCAGAGCCCTCCCCAGAGTTTCCCCAGATTGGGTGTGTGCTGGTAGCAAGAAGTGC
TGTCCAAAAGTCACTCGTTAGGGCCTCTTGTTGGAACCTATTAGCAGCAAATAAATATCATTTATCTTGA
CitationPedersen JK, Nelson SB, Jorgensen MC, Henseleit KD, Fujitani Y, Wright CV, Sander M, Serup P; Beta Cell Biology Consortium. Endodermal expression of Nkx6 genes depends differentially on Pdx1. Dev Biol. 2005 Dec 15;288(2):487-501.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_428808).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 11
 Chicken embryos with antisense probes recognizing Nkx6.1, Nkx6.2, Nkx6.3, Nkx2.2, and Pdx1.
No expression at HH11.
13-17
stage 15
stage 15
stage 17
Endoderm
Neural Plate/Tube
Pancreas
Chicken embryos with antisense probes recognizing Nkx6.1, Nkx6.2, Nkx6.3, Nkx2.2, and Pdx1.
Pancreatic Buds
Pancreatic Primordia

Mouse

EmageMGI:1921811
EurexpressMGI:1921811
MGI GXDMGI:1921811

Frog

Xenbase478608

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-070810-7
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