GEISHA - A Chicken Embryo Gene Expression Database
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KRT7
keratin 7

Gene
Official SymbolKRT7
Official Full Namekeratin 7
CGNC ID49470
also known askeratin, keratin, type II cytoskeletal cochleal|cytokeratin otokeratin|otokeratin|type II cytoskeletal cochleal
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204932
PolypeptideNP_990263
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.9481
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse239673ENSMUSG00000048699All phenotypic alleles (1):Targeted, knock-out(1) MGI:3045312
Xenopus
Zebrafish
Gene Ontology
Molecular Functionstructural molecule activity
Biological Process
Cellular Componentkeratin filament
Links to other databases
Entrez Gene395772
Ensembl Gene
KEGGgga:395772

Entry 1

GEISHA IdT36Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCCTAAGGCTTGATCCTGCACTGTTGAACTCAGCGGGAGCCATCCCACTGAGGGCAGGTTCAAGCCTGTAGGGTGAAAT
TCCTCCAGGGAAGCAGGCAGGATAATGCTTTTGTTACTTGTATGCTTGGTACCCCTGCTCAGGGCTGGCTTTCACCCTT
TGAAGGGCAAAGCAATCATTGTGGCAAGCTTTTCCACATTTCTGCTGTGGTTTTACAAAAGAGACCAGAAGATTATCTC
CCTCTGAATATGATTTGGAAGACTTCATTCCCTTGGGCTGCTCAGAAAGTGGCAGCCCTGATTGAGATTTCAGTCTGGG
GTTATTGTCTTAAAATATGCCAGGAAGAAAAATGGTGAAACCGCTTTGGGTTTCTCCTTCTGTTCTTTAGAAATTGGAT
CAGAAGTGGAACTGGACAATTCTGGTCTGATTGAAGCTAATTTCTTACCGAAGGCAATGCAGACAGATCTCCTTTACAG
GTTCTGTATAACAAAATAACTCACAAATTCACCCATTCTGTCTTCTAAACAGAAGCCCAAAGCCTAAAGGGTATGGAAA
CTGCTTAAAATCACAAGCAGCACACAGAAATGGGAGATAACACTCCCCATCCTTGGGTGCCTCTGTTTACTACCCTATA
TTCCAGAACATTACTAGTGATATCCGGGGTCTTTCCTACCACTGGGGAAAAAACGTGTTTTGTTGATGCTTCATTACAA
ATAACTCTTTGTTCTGCCAAAATGAGGCTTCAACCTAAACACGCCNGGGGAAATATTTTGTTACTGGGGGAGGTAGGAA
GAATTTTCAATAAACAAGTCANAGAANAAAAAAAAAAAAAAACCT
Commentsexpression not yet available at all stages
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Area Opaca
 
7-11
stage 8
stage 11
Endoderm, early
Extraembryonic
 

Entry 2

GEISHA IdM17Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCCAGATCTCTGACACCTCCGTGGTGCTGTCCATGGACAACAGCAGAAACCTGGACCTGGACAGCATCATTGCAGAGGT
CAAAGCACAGTATGAGGATATTGCCAACAGGAGCCGGGCAGAGGCTGAGTCCTGGTACCAGAGCAAGTTCGAAGCACTG
CAGGTCACTGCTGGGAAACACGGGGACGATCTGCGCAACACCAAGAATGAGATCACAGAGATAAACCGTGTGATCCAGA
GGCTGCAGGGTGAAATTGAAAACGCAAAGGCCCAGCGTGCCAAGATGGAAGCTGCCATTGCTGAAGCTGAGGAACGTGG
TGAGCTGGCTGTCAAAGACGCCAGGGCAAAGCTGGAGGAGCTGGAGGCTGCTCTGCAAAAGGCAAAGCAGGACATGGCC
CGACAGCTGCGTGAATACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGACATTGAGATTGCAACCTACAGGAAGCTGC
TGGAGGGCGAGGAGAGCAGGTTGGCTGGCGATGGAGTTGGCAGCGTCAACATCTCCATGGTCTCCTCCAGTGGCGGTGG
ATCCAGTGGATTCCTGGGAGGAGGGGTCCGTGGAGGCCTTGCCCTGNGAGCAGGGATGGGCAGTGGAGCGCTCGGCTTC
TCCTCGGGGGGCTCCACCAAATCCTACACCGTCACCACAACCTCATCCACCAGAAGCTT
Reverse cDNA Template Probeshow
ACCCTTTGAAGGGCAAAGCAATCGTTGTGGCAAGCTTTTCCACATTTCTGCTGTGGTTTTACAAAAGAGACCAGAAGAT
TATCTCCCTCTGAATATGATTTGGAAGACTTCATTCCCTTGGGCTGCTCAGAAAGTGGCAGCCCTGATTGAGATTTCAG
TCTGGGGTTATTGTCTTAAAATATGCCAGGAAGAAAAATGGTGAAACCGCTTTGGGTTTCTCCTTCTGTTCTTTAGAAA
TTGGATCAGAAGTGGAACTGGACAATTCTGGTCTGATTGAAGCTAATTTCTTACCGAAGGCAATGCAGACAGATCTCCT
TTACAGGTTCTGTATAACAAAATAACTCACAAATTCACCCATTCTGTCTTCTAAACAGAAGCCCAAAGCCTAAAGGGTA
TGGAAACTGCTTAAAATCACAAGCAGCACACAGAAATGGGAGATAACACTCCCCATCCTTGGGTGCCTCTGTTTACTAC
CCTATATTCCAGAACATTACTAGTGATATCCGGGGTCTCTCCTACCACTGGGGAAAAAGCGTGTTTTGTTGATGCTTCA
TTACAATAACTCCTTGTTCCTGCCAAAATGAGGCTTCAACCTAAACACGCCGGGGAAATATTTTGTTACTGTGGTAGGT
AGGAAGAATTTTTCAATAAACAAGTCAAAGAAACTGCATGGAATTGTTGCATTGCATGCTCTGCCGTGTCCTAGCAGCG
TTATCTCTGGTTGATGTTTTATACCTTTGTGGTCTGGGAGTTTGCCATGAGGCCGTTAATAAAGTTGCCCTGCTGTGTG
TTCTTCAAAAAAAAAAAAAAAAAA
Comments3' and 5' sequences don't overlap, therefore a central part of the probe is not represented on the probe map/minigene view.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 6
Area Opaca
Extraembryonic
 
7-12
stage 8
stage 10
stage 10
stage 12
Endoderm, early
Extraembryonic
Surface Ectoderm
 
13-18
stage 15
stage 16
stage 17
Extraembryonic
 
19-24
stage 22
stage 22
stage 23
stage 24
Extraembryonic
 

Entry 3

GEISHA IdCytokeratin.James.2005Data SourcePublication
Complete cDNA Template Probeshow
ATCGACCCCAACATCCAGCGGGTGCGCAAGGAGGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTTGCTTCCTTCA
TCGACAAGGTCCGGTTCCTGGAGCAACAAAACAAAATGCTGGAGACCAAATGGAGTCTGCTCCAGGACCAGAAGACCAC
CCGGAGTAACATCGTCCCCATGTTTGAGGCGTACATCACCAACCTGAGGCGGCAGCTGGACGGGTTGTTAAATGACAAA
GGGCGTCTGGAGGGTGAACTGAGGAACATGCAGGATCTTGTTGAGGATTTCAAGGCCAAATATGAAGATGAGATCAACA
AGCGCACGACAGCAGAGAATGAGTTCGTGGTGCTCAAGAAGGATGTGGATGCTGCCTACATGAATAAAGTGGAGCTGGA
GGCCAAGGTGGATGCACTGACGGATGAGATTAACTTCCTGAGATCTCTCTACGAAGCGGAGCTTCGTGAGCTGCAGGCC
CAGATCTCTGACACCTCCGTGGTGCTGTCCATGGACAACAGCAGAAACCTGGACCTGGACAGCATCATTGCAGAGGTCA
AAGCACAGTATGAGGATATTGCCAACAGGAGCCGGGCAGAGGCTGAGTCCTGGTACCAGAGCAAGTTCGAAGCACTGCA
GGTCACTGCTGGGAAACACGGGGACGATCTGCGCAACACCAAGAATGAAATCACAGAGATAAACCGTGTGATCCAGAGG
CTGCAGGGTGAAATTGAAAACGCAAAGGCCCAGCGTGCCAAGATGGAAGCTGCCATTGCTGAAGCTGAGGAACGTGGTG
AGCTGGCTGTCAAAGACGCCAGGGCAAAGCTGGAGGAGCTGGAAGCTGCTCTGCAAAAGGCAAAGCAGGACATGGCCCG
ACAGCTGCGTGAGTACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGACATTGAGATTGCAACCTACAGGAAGCTGCTG
GAGGGCGAGGAGAGCAGGTTGGCTGGCGATGGAGTTGGCAGCGTCAACATCTCCATGGTCTCCTCCAGTGGCGGTGGAT
CCAGTGGATTCCTGGGAGGAGGGGTCCGTGGAGGCCTTGCCCTGGGAGCAGGGATGGGCAGTGGAGCGCTCGGCTTCTC
CTCGGGGGGCTCCACCAAATCCTACACCGTCACCACAACCTCATCCACCAGAAGCTTCAGGAAGTAA
CitationJames RG, Schultheiss TM. Bmp signaling promotes intermediate mesoderm gene expression in a dose-dependent, cell-autonomous and translation-dependent manner. Dev Biol. 2005 Dec 1;288(1):113-25. Epub 2005 Oct 21.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information provided in the publication as described in James et al. 2005.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
Ectoderm
Endoderm
Mesoderm
 
all
 
  

Entry 4

GEISHA IdOTOKERATIN.Heller.1998Data SourcePublication
Complete cDNA Template Probeshow
CCCAGTTCAGCTACCCTCAGGTTTAAGGACAGGGGATACCTCAGGACCGCTGCAGCCATGTCCCGCTCCGTCAGCTTCA
GCTCTCGCTCCGTGGCCGTCCCAGGGGTCAGCCAGGTGCGGGTCAGCTCCGTCTCCTCTGTTCGTGGAGGTGGTAGCCT
TAACAAGGCGGGGGGCTTTGGCAGCTCCAGCCTCTACAACCTGGGCTCTGCCAACAAGCGGATCTCCCTCGGAGGCAGC
AGCTCCTACAGCGTTCGCTCTGGATACGGCTACGGCGGCATGGGGTTCGGAGGGGCCATCGCCCCCAGTGCGGGCATCC
AGGAAGTCACCGTCAACCAGAACCTCCTGACCCCCCTCAACCTGGAGATCGACCCCAACATCCAGCGGGTGCGCAAGGA
GGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTTGCTTCCTTCATCGACAAGGTCCGGTTCCTGGAGCAACAAAAC
AAAATGCTGGAGACCAAATGGAGTCTGCTCCAGGACCAGAAGACCACCCGGAGTAACATCGTCCCCATGTTTGAGGCGT
ACATCACCAACCTGAGGCGGCAGCTGGACGGGTTGTTAAATGACAAAGGGCGTCTGGAGGGTGAACTGAGGAACATGCA
GGATCTTGTTGAGGATTTCAAGGCCAAATATGAAGATGAGATCAACAAGCGCACGACAGCAGAGAATGAGTTCGTGGTG
CTCAAGAAGGATGTGGATGCTGCCTACATGAATAAAGTGGAGCTGGAGGCCAAGGTGGATGCACTGACGGATGAGATTA
ACTTCCTGAGATCTCTCTACGAAGCGGAGCTTCGTGAGCTGCAGGCCCAGATCTCTGACACCTCCGTGGTGCTGTCCAT
GGACAACAGCAGAAACCTGGACCTGGACAGCATCATTGCAGAGGTCAAAGCACAGTATGAGGATATTGCCAACAGGAGC
CGGGCAGAGGCTGAGTCCTGGTACCAGAGCAAGTTCGAAGCACTGCAGGTCACTGCTGGGAAACACGGGGACGATCTGC
GCAACACCAAGAATGAAATCACAGAGATAAACCGTGTGATCCAGAGGCTGCAGGGTGAAATTGAAAACGCAAAGGCCCA
GCGTGCCAAGATGGAAGCTGCCATTGCTGAAGCTGAGGAACGTGGTGAGCTGGCTGTCAAAGACGCCAGGGCAAAGCTG
GAGGAGCTGGAAGCTGCTCTGCAAAAGGCAAAGCAGGACATGGCCCGACAGCTGCGTGAGTACCAGGAGCTGATGAACG
TCAAGCTGGCCCTGGACATTGAGATTGCAACCTACAGGAAGCTGCTGGAGGGCGAGGAGAGCAGGTTGGCTGGCGATGG
AGTTGGCAGCGTCAACATCTCCATGGTCTCCTCCAGTGGCGGTGGATCCAGTGGATTCCTGGGAGGAGGGGTCCGTGGA
GGCCTTGCCCTGGGAGCAGGGATGGGCAGTGGAGCGCTCGGCTTCTCCTCGGGGGGCTCCACCAAATCCTACACCGTCA
CCACAACCTCATCCACCAGAAGCTTCAGGAAGTAAAGGCAGGAACGGAACCCAGCGGTACCCACGACACGGGAGGAGGG
AAAAACACAGAAAGAGAAGTTTGGTTGCCTTTCGTAGGACAAATTGGCTGCAAAATTTCTGCAGTGATGAATGAATTGG
AATAAGATATACCTGACCCTGCTGCATCACACCTAAGGCTTGATCCTGCACTGTTGAACTCAGCGGGAGCCATCCCACT
GAGGGCAGGTTCAAGCCTGTAGGGTGAAATTCCTCCAGGGAAGCAGGCAGGATAATGCTTTTGTTACTTGTATGCTTGG
TACCCCTGCTCAGGGCTGGCTTTCACCCTTTGAAGGGCAAAGCAATCATTGTGGCAAGCTTTTCCACATTTCTGCTGTG
GTTTTACAAAAGAGACCAGAAGATTATCTCCCTCTGAATATGATTTGGAAGACTTCATTCCCTTGGGCTGCTCAGAAAG
TGGCAGCCCTGATTGAGATTTCAGTCTGGGGTTATTGTCTTAAAATATGCCAGGAAGAAAAATGGTGAAACCGCTTTGG
GTTTCTCCTTCTGTTCTTTAGAAATTGGATCAGAAGTGGAACTGGACAATTCTGGTCTGATTGAAGCTAATTTCTTACC
GAAGGCAATGCAGACAGATCTCCTTTACAGGTTCTGTATAACAAAATAACTCACAAATTCACTCATTCTGTCTTCTAAA
CAGAAGCCCAAAGCCTAAAGGGTATGGAAACTGCTTAAAATCACAAGCAGCACACAGAAATGGGAGATAACACTCCCCA
TCCTTGGGTGCCTCTGTTTACTACCCTATATTCCAGAACATTACTAGTGATATCCGGGGTCTCTCCTACCACTGGGGAA
AAAGCGTGTTTTGTTGATGCTTCATTACAATAACTCCTTGTTCCTGCCAAAATGAGGCTTCAACCTAAACACGCCGGGG
AAATATTTTGTTACTGTGGTAGGTAGGAAGAATTTTTCAATAAACAAGTCAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
CitationHeller S, Sheane CA, Javed Z, Hudspeth AJ. Molecular markers for cell types of the inner ear and candidate genes for hearing disorders. Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11400-5.
CopyrightCopyright © 2012 National Academy of Sciences. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204932 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-43
stage 43
stage 43
Ear/Otic Placode
 

Entry 5

GEISHA IdOtokeratin.Afrakhte.2004Data SourcePublication
Complete cDNA Template Probeshow
CCCAGTTCAGCTACCCTCAGGTTTAAGGACAGGGGATACCTCAGGACCGCTGCAGCCATGTCCCGCTCCGTCAGCTTCA
GCTCTCGCTCCGTGGCCGTCCCAGGGGTCAGCCAGGTGCGGGTCAGCTCCGTCTCCTCTGTTCGTGGAGGTGGTAGCCT
TAACAAGGCGGGGGGCTTTGGCAGCTCCAGCCTCTACAACCTGGGCTCTGCCAACAAGCGGATCTCCCTCGGAGGCAGC
AGCTCCTACAGCGTTCGCTCTGGATACGGCTACGGCGGCATGGGGTTCGGAGGGGCCATCGCCCCCAGTGCGGGCATCC
AGGAAGTCACCGTCAACCAGAACCTCCTGACCCCCCTCAACCTGGAGATCGACCCCAACATCCAGCGGGTGCGCAAGGA
GGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTTGCTTCCTTCATCGACAAGGTCCGGTTCCTGGAGCAACAAAAC
AAAATGCTGGAGACCAAATGGAGTCTGCTCCAGGACCAGAAGACCACCCGGAGTAACATCGTCCCCATGTTTGAGGCGT
ACATCACCAACCTGAGGCGGCAGCTGGACGGGTTGTTAAATGACAAAGGGCGTCTGGAGGGTGAACTGAGGAACATGCA
GGATCTTGTTGAGGATTTCAAGGCCAAATATGAAGATGAGATCAACAAGCGCACGACAGCAGAGAATGAGTTCGTGGTG
CTCAAGAAGGATGTGGATGCTGCCTACATGAATAAAGTGGAGCTGGAGGCCAAGGTGGATGCACTGACGGATGAGATTA
ACTTCCTGAGATCTCTCTACGAAGCGGAGCTTCGTGAGCTGCAGGCCCAGATCTCTGACACCTCCGTGGTGCTGTCCAT
GGACAACAGCAGAAACCTGGACCTGGACAGCATCATTGCAGAGGTCAAAGCACAGTATGAGGATATTGCCAACAGGAGC
CGGGCAGAGGCTGAGTCCTGGTACCAGAGCAAGTTCGAAGCACTGCAGGTCACTGCTGGGAAACACGGGGACGATCTGC
GCAACACCAAGAATGAAATCACAGAGATAAACCGTGTGATCCAGAGGCTGCAGGGTGAAATTGAAAACGCAAAGGCCCA
GCGTGCCAAGATGGAAGCTGCCATTGCTGAAGCTGAGGAACGTGGTGAGCTGGCTGTCAAAGACGCCAGGGCAAAGCTG
GAGGAGCTGGAAGCTGCTCTGCAAAAGGCAAAGCAGGACATGGCCCGACAGCTGCGTGAGTACCAGGAGCTGATGAACG
TCAAGCTGGCCCTGGACATTGAGATTGCAACCTACAGGAAGCTGCTGGAGGGCGAGGAGAGCAGGTTGGCTGGCGATGG
AGTTGGCAGCGTCAACATCTCCATGGTCTCCTCCAGTGGCGGTGGATCCAGTGGATTCCTGGGAGGAGGGGTCCGTGGA
GGCCTTGCCCTGGGAGCAGGGATGGGCAGTGGAGCGCTCGGCTTCTCCTCGGGGGGCTCCACCAAATCCTACACCGTCA
CCACAACCTCATCCACCAGAAGCTTCAGGAAGTAAAGGCAGGAACGGAACCCAGCGGTACCCACGACACGGGAGGAGGG
AAAAACACAGAAAGAGAAGTTTGGTTGCCTTTCGTAGGACAAATTGGCTGCAAAATTTCTGCAGTGATGAATGAATTGG
AATAAGATATACCTGACCCTGCTGCATCACACCTAAGGCTTGATCCTGCACTGTTGAACTCAGCGGGAGCCATCCCACT
GAGGGCAGGTTCAAGCCTGTAGGGTGAAATTCCTCCAGGGAAGCAGGCAGGATAATGCTTTTGTTACTTGTATGCTTGG
TACCCCTGCTCAGGGCTGGCTTTCACCCTTTGAAGGGCAAAGCAATCATTGTGGCAAGCTTTTCCACATTTCTGCTGTG
GTTTTACAAAAGAGACCAGAAGATTATCTCCCTCTGAATATGATTTGGAAGACTTCATTCCCTTGGGCTGCTCAGAAAG
TGGCAGCCCTGATTGAGATTTCAGTCTGGGGTTATTGTCTTAAAATATGCCAGGAAGAAAAATGGTGAAACCGCTTTGG
GTTTCTCCTTCTGTTCTTTAGAAATTGGATCAGAAGTGGAACTGGACAATTCTGGTCTGATTGAAGCTAATTTCTTACC
GAAGGCAATGCAGACAGATCTCCTTTACAGGTTCTGTATAACAAAATAACTCACAAATTCACTCATTCTGTCTTCTAAA
CAGAAGCCCAAAGCCTAAAGGGTATGGAAACTGCTTAAAATCACAAGCAGCACACAGAAATGGGAGATAACACTCCCCA
TCCTTGGGTGCCTCTGTTTACTACCCTATATTCCAGAACATTACTAGTGATATCCGGGGTCTCTCCTACCACTGGGGAA
AAAGCGTGTTTTGTTGATGCTTCATTACAATAACTCCTTGTTCCTGCCAAAATGAGGCTTCAACCTAAACACGCCGGGG
AAATATTTTGTTACTGTGGTAGGTAGGAAGAATTTTTCAATAAACAAGTCAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
CitationAfrakhte M, Schultheiss TM. Construction and analysis of a subtracted library and microarray of cDNAs expressed specifically in chicken heart progenitor cells. Dev Dyn. 2004 Jun;230(2):290-8.
CopyrightCopyright © 2004 Wiley‐Liss, Inc.
CommentsThe complete cDNA template sequence was obtained from the information in the publication as described in Afrakhte et al. 2004. Otokeratin is also known as KRT7 in NCBI.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Early Mesoderm
 
31-44
stage 44
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.9481

Mouse

EmageMGI:3045312
EurexpressMGI:3045312
MGI GXDMGI:3045312

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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