GEISHA - A Chicken Embryo Gene Expression Database
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OPTC
opticin

Gene
Official SymbolOPTC
Official Full Nameopticin
CGNC ID49183
also known asopticin, opticin
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204473
PolypeptideNP_989804
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.9465
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human26254ENSG00000188770MIM:605127
Mouse269120ENSMUSG00000010311All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1) MGI:2151113
Xenopus549253941988
Zebrafish445189ENSDARG00000014358ZDB-GENE-030131-1798ZFIN:ZDB-GENE-030131-1798
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395130
Ensembl Gene
KEGGgga:395130

Entry 1

GEISHA IdOPTC.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-AGCAATTCCATCTCCTGGGC-3’
Reverse cDNA Template Primer5’-AATTAACCCTCACTAAAGGAAACGAGAGAGTGCAGGTGG-3’cDNA Template Length512
Complete cDNA Template Probeshow
AGCAATTCCATCTCCTGGGCAGATGTGGACGCTTTCCGTTTCCTCCCCAGCCTGCAGGAGCTCATCCTGCCTGAGAACA
GGCTGACGGCGCTTCCCGAGCTGCCCCGCAGCATCATCAGGCTGGATGCCCGTCTCAACAGAATCCCCAGTGCTGGTCT
CCGGCCTGAAGCTTTCCAGGACCTCACGCAGCTGCAATTTCTCCATCTGTCCGATAACCAGCTGGACTACATCCCTGCA
CCCCTGCCAGAGAGCCTACGCTCCCTGCACCTCCAGAACAACAACATCCAGACCATGCATGAGGACACGTTTTGCAACA
GCCAGGACCAGAGCCACGTCCGCAGGGCGCTGGAGGACATCCGCCTCGATGGCAACCCCATCAACCTCAGCCTCTTCCC
CAATGCCTACTTCTGCCTGCCTCGCCTGCCCACGGGGCACTTCCTCTGAGCCCCAGCATCAGCCCCTAATGGGGAGCAT
CCCCAGGCCCCTGACACTCCACCTGCACTCTCTCGTTT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 9
stage 11
stage 11
Eye
Forebrain
Hindbrain
Midbrain
Neural Plate/Tube
Unlabeled
 
13-18
stage 16
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
 
19-24
stage 20
stage 20
stage 21
stage 23
stage 23
stage 23
Central Nervous System
Ear/Otic Placode
Forebrain
Head Mesenchyme
Hindbrain
Midbrain
Nasal Placode/Nerve
Neural Plate/Tube
Oral Pharynx
Pharyngeal Arches and Clefts
Retina
 
25-26
stage 26
Ear/Otic Placode
Forebrain
Hindbrain
Midbrain
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Retina
Spinal Cord
 

Entry 2

GEISHA IdOpticin.Frolova.2004Data SourcePublication
Complete cDNA Template Probeshow
TGATGAAAACAGAGGCTGCAGTCCTTGGCACGGCTGCAGAGTGGGGCCAGCATTTTCATCCTGCCTTCCTGCCCTTCTC
TTTGCTTTCACCGCTTTGCAGGCATCTTAGGGTAGATGGCTTTAGGGCACAGGATGCAGACTCTGGCCTGGGTGGGCAT
CGCCAGCCTGTGTTTGGGAGCAGCCTGGGCTGTCCCAGCCAAGAAGGAGAGGAAGAAGGTGGAGAAGCTAAAACCTGAC
CTTGTGCTCTATGAAAACCTGGATCTGGACAACTATGATGTGACTCTGGACAACTATGGGGACATCATGGACCTGAACA
ACTATGAGGAGCTCTACGACTACGGTGACCTGGCTCCGAAGATCGAGGTTGGGACTCTGGCTCCTCGCCCCAAGGACCG
TGAGTCTCTGCCAGAACTGGTCACAGCAGCTCCAACACCAAAGCTGCAGCCTCCGGACACCACCAACCCCATCCGCCCA
GCACCACCGGGACCCGGCACTGCGCAGGGCGTCCCCAGCTGCTTGCCCTGCCTCTGCATTAGAACCTCTGTGTACTGCG
ATGACACCGACCTGGAGCACATCCCGCCACTGCCGCCTGACACCACCTACCTGTACGCCCGCTTCAACCGCATCAGCGC
CATCCGGGCCGGCGATTTCATGGGGCTGAAGAAACTGAAGCGAATAGACCTGACAAGCAATTCCATCTCCTGGGCAGAT
GTGGACGCTTTCCGTTTCCTCCCCAGCCTGCAGGAGCTCATCCTGCCTGAGAACAGGCTGACGGCGCTTCCCGAGCTGC
CCCGCAGCATCATCAGGCTGGATGCCCGTCTCAACAGAATCCCCAGTGCTGGTCTCCGGCCTGAAGCTTTCCAGGACCT
CACGCAGCTGCAATTTCTCCATCTGTCCGATAACCAGCTGGACTACATCCCTGCACCCCTGCCAGAGAGCCTACGCTCC
CTGCACCTCCAGAACAACAACATCCAGACCATGCATGAGGACACGTTTTGCAACAGCCAGGACCAGAGCCACGTCCGCA
GGGCGCTGGAGGACATCCGCCTCGATGGCAACCCCATCAACCTCAGCCTCTTCCCCAATGCCTACTTCTGCCTGCCTCG
CCTGCCCACGGGGCACTTCCTCTGAGCCCCAGCATCAGCCCCTAATGGGGAGCATCCCCAGGCCCCTGACACTCCACCT
GCACTCTCTCGTTTCCCACTGTTCAATGGAGAACATGGGATTAAGGCAGACGTGTTTAACCTTAGTGTGAGCTGAGCGT
CTGCACATGGATGAACTCAGTTCTGGGGCAAACGGAGCCGGGTGTGGGCAGCTGTAATAAAATGAAGACTTT
CitationFrolova EI, Fokina VM, Beebe DC. The expression pattern of opticin during chicken embryogenesis. Gene Expr Patterns. 2004 May;4(3):335-8.
CopyrightReprinted with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "A plasmid containing a fragment of cOptc cDNA was obtained from a cDNA library prepared from E7 chicken embryo ciliary epithelium polyA RNA (Frolova, EI, unpublished). 5′ and 3′RACE were performed using FirstChoice™ RLM-RACE Kit (Ambion). The complete sequence was submitted to GenBank under Accession number XXX... The sequence was 1,336 bp in length and contained the entire open reading frame of chicken opticin, cOptc (Genbank accession number AY156089)."
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 10
stage 12
stage 12
stage 12
Eye
Forebrain
Hindbrain
Neural Plate/Tube
Optic Vesicle
13-18
stage 15
stage 15
stage 18
stage 18
Ear/Otic Placcode
Eye
Forebrain
Nasal Placcode/Nerve
Neural Plate/Tube
Pharyngeal Arches and Clefts
Retina
pharyngeal pouch endoderm
19-24
stage 20
stage 20
stage 21
stage 24
stage 24
Ear/Otic Placcode
Nasal Placcode/Nerve
Neural Plate/Tube
Pharyngeal Arches and Clefts
Retina
Somites
Tail
Telencephalon

Medial Walls of the Lateral Ventricles
Pigmented Epithelium
Ventricular Zone of the Pallido-entopenduncular-preotic Domain
25-28
stage 26
stage 26
stage 28
stage 28
Hindbrain
Neural Plate/Tube
Retina
Ependymal Layer
Non-pigmented layer of the Ciliary Epithelium
Ventricular Zone of the Metencephalon and Myelencephalon
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.9465

Mouse

Emage
EurexpressMGI:2151113
MGI GXDMGI:2151113

Frog

Xenbase941988

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-1798
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