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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SALL4
spalt like transcription factor 4

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	SALL4
Official Full Name	spalt like transcription factor 4
BirdBase ID	BB-GG17142
CGNC ID	55134
also known as	sal-like protein 4\|sal-like 4\|spalt4
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001080872
Polypeptide	NP_001074341
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.39989

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	57167	ENSG00000101115	MIM:607323	MIM:607343
Mouse	99377	ENSMUSG00000027547	All phenotypic alleles (14):Targeted, knock-out(7) Targeted, other(4) Gene trapped(3)	MGI:2139360
Xenopus	407860, 398679			485251
Zebrafish	572527	ENSDARG00000044485	ZDB-GENE-060328-2	ZFIN:ZDB-GENE-060328-2

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	769286
Ensembl Gene	ENSGALG00000007834
KEGG	gga:769286

Entry 1

GEISHA Id	P13	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GTTCGTCTTCTGTGGCCGGAGATCCAGATTATCAGAATGGCCGCAGTCCTGCCGCCTCCGAGTCCACCTCGCTGCAGGC TCTATCCCCTGCCAACAGCCAAACTGAGAGCGTGAGGTCAAAGTCACCGAGCTTCACCAGCCAAGAAGATGTAGGCACG GGAAGTAAATCAGAGGGTCCTGAGAGTGCTCCTGGAGAGATGGAAGGGGTCGTTGCTTTGGATTTAACTTATGGCAACA TTGGTCGGAAAGTCATTAAAGAAGAACCTGGGCTACACTTTGCAAATGGAGAGTATGGTCGAAATAGTATTCCAGCTGC TTTTGTTAGAGCCCCGCCAGCCCTCATAAAAATGGAAATACCAAGTGAGCGTCCCATTAGCACTAGCCATTTCATTGGC CCACCAGCTCTCTCCCCTGGTGTTGCCCCTCTCCTTGTGCCACGACCGAAGTTCTGCCGTCCAGCCAAACAGCACATCT GCACTACGTGTGGGAAGAACTTCTCCTCTGCCAGTGCCCTGCAGATTCACGAGCGGACCCATACAGGGGAAAAGCCATT TG
Comments	other stages not yet available

Stage

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Location (click to highlight)

Comments (click to highlight)

7-8

stage 8

Tail

Entry 2

GEISHA Id	ChEST200n21	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GGCTAGCACGCGGGCTAGCACCCGAAGTTCTGCCGTCCAGCCAAACAGCACATCTGCACTACGTGTGGGAAGAACTTCT CCTCTGCCAGTGCCCTGCAGATTCACGAGCGGACCCATACAGGGGAAAAGCCATTTGCCTGCACCATCTGTGGGAGAGC CTTTACAACGAAGGGGAACCTGAAGGTCCATGTAGGAACTCACATGTGGAATAATTCTGCCAGACGGGGAAGAAGGCTT TCAATTGATAACCCCATGGCTCTACTGGGGAATGACCCCAAGAAGGTATCTGAAATGTTTCCCAAGGATATCGTGGCTC CTTCAGTGAGCATTGACCCCACAGTATGGAATCAGTACACAGCAGTGCTCAGCAATGGCATAGCAATGAAGACCAACGA GATCTCAGTGATCCAAAGCGGCGGCTTACCGACCCTCCCAGTCACCGTTGCGGGTGGTTCGGCAATAAACACTGCGACG GTTTCCAAAACGGATGGGACCCAGTCTGGGGCTGGTTCTGATACGGAAAAGGCCGGTGGTGCTGCTGCAGACAACGTGC CAAAACATCAATTCCCTCTCTTCATGGAGGAGAACAAAATTGCCGTTAGTTAAGAACTCGAGTGAAGATGACGTACAGA AAGAACAAATATATATATACAAACATATATTTTTAAGAGATTCCACTTCAGCCTCCTATTTTCCTATTGACGTGCAAAT GATTTTATGGTTGTCTTTGTAAGATTTCGTTGCCCAGAGTACAATCATGGTATTGCTTTGCAAATAGTAAATAATAAAG AATAGGATTTCCTTTTATTTGGAAAGATGCGGGTCTTGCAAAGTAGTTCTTACGTGTGACTTTAATGTGTACAGCCTTA CA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Epiblast

7-12

stage 8

stage 11

Face Mesenchyme
Head Mesenchyme
Hindbrain
Neural Plate/Tube
Tail

13-18

stage 14

stage 17

Face Mesenchyme
Midbrain
Pharyngeal Arches and Clefts
Pineal Gland
Tail

stage 19

Face Mesenchyme
Hindbrain
Leg Mesenchyme
Midbrain
Pharyngeal Arches and Clefts
Pineal Gland
Tail
Wing Mesenchyme

Entry 3

GEISHA Id	Spalt4.Barembaum.2007	Data Source	Publication
Complete cDNA Template Probe	show GGTAATTACTCTGACATGCGCATTCCGCCCAATGGGGGTAATTTCCCAACTCTAGGAATTTGTTGTGAAGAGGAAAATA ATTGCTACTATTTTGCTCCCGATGCTGGTGCACCATGTCGCGACGGAAGCAGGCGAAGCCCCAGCACATCAACTCCGAG GAGCAGCCCCCAGATGCTGCAAGTGGGAGTCCACGAGACGTCCCAGGTGATGGAGATGGCGAAATGAGCTCCAAAAGGT GCCGAACGGAGGAAACCAAGATCTGTGAGAAATGCTGTGCAGAATTCTTCGATCTCTCTGAATTCCTTGAGCATAAGAA AAATTGCACTAAAAATCCACCTGTCCTAATCATGAATGACAGTGAGGGAGCAGTCCCTCCTGAAGGCTTCTCCGAAGCT GCTGTTGGGAGCTTCTCGAGTGACCGAGGGGATAGCAGGGCACACAAGGACACTCAGGCGAAGGGCTGCACCGGTTCTG CAGAGAAGAGAGAAGGAAAAATTGATGCCGAGTCGGTGGGAGGGATGTACCTCAAGATAGAACCCCCAGCTGCACCCGT GACTCCTGGGCTGAGCTATCTACCAAAATCCAAAGTACCGAACACTAACGTGACTTTGCAGACGATACGTGGCACTAAA GTGGCTGTGAACCAGCGTACCACCGACGCCATCGCTTCTTCAGCCGCCAGCTTTAATGCTATTCCCATGATCCTGGAGC AGCTCGTGTGCTTGCAGCAGCAGCAGCTCCAGCAGATCCAGCTGACGGAGCAGATCCGCATCCAGATCGCCATGATGGC CCCTCACGCCCTGCACCCCTCCATAGCCGCTGCTGCTGACCCACTGAAGGCGCTGGGTGCTCACATGTCCCAGCAGCTG TCAGCCGCTGTGGCGCTGATCGGGCAGAAGGCGGGAAGCCAGAGCCTATCGCTGGAATCCTTGAAGCAAGGCAAACTAC CTCATGCTAACACTGGTGTTGCGGCCGCCGGCTCGCTGGCTGCCGGCCTCTCCTCCCCCTTCCCCCTGAAGCCAGAGGC CAGCAGAACCTTTGCCGGCTCCATTTCTCGGTTCCCGAATCCTTTGCTACCTCAGTCCTCCCACTCTGTCATCTTCCAG AATCCCCTTTCGGCTGTTTCTTCTGTCATAGATTCCTCAAAGAGGGTGAAAGGGAAACCTCCCAATATCTGTGTGTCCG AAAGCAAATCGAGCGCAGAGGAGCCGTTCTTCAAACACAAGTGTAAATTCTGCGGCAAGGTCTTTGGCAACGACAGCGC CCTGCAGATCCACCTCCGCTCCCACACCGGAGAGAGGCCCTACAAGTGTAACATTTGTGGTAACCGCTTTACAACCAAA GGAAACCTTAAAGTGCATTTTCAGCGTCACAAAGACAAATACCCCCACATCAAGATGAACCCTTACCCGGTTCCTGAGC ACCTGGACAATGTTCCCACAAGCAGTGGGATCCCGTATGGGATGTCTGTGCCACTGGATGAGTCTAACCTAATCGTGGA TAGCAAACCCCTGCTGACAACCCTGCCTACCTCCGCAGCCTCCAGCGCTCCTCCGAACGCTCCCAGCCTTGCGGGCACC AAGGAGCCGGCCGCCTTCTCCACAGAGCTGCCCTCTCGGCCTTCTCCAGACAGCGAAGGCGGCTCTTCCTCATCTGGGG CGGTCGGTCACGAATCGGGAACGGAGCAGAGCTTGAGCTCCCCGCAAGCTGCCTGCAGCGGGGGCATCTTCCACATGGG CGGGTCGAATGAGCAAGGTTCAGAAACATCCAAGCTTCAGCAGCTGGTTGAGAACATCGATAAGTCCACTGCGGACCCC AACGAGTGCCTGATCTGTCACAGAGTGCTGAGCTGCCAGAGCTCGCTCAAAATGCATTATCGTACCCACACCGGGGAGA GGCCGTTCAAGTGTAAAATCTGTGGCCGTGCCTTCTCCACCAAAGGGAATCTTAAAACTCATTATGGTGTCCACCGGGC CAATACTCCTCTGAAGATGCAACACTCGTGTCCTATCTGCCAGAAGAAGTTCACAAACGCAGTTGTGTTGCAGCAGCAC ATCCGCATGCATATGGGAGGACAGATACCTAACACGCCCATGCCGGAAAACACCTGTGACAGCGCCGAAGTGGATCCTG CTGCAGCTGAGAAGAACGGTGACATCAGCCGCCCAGATGAGAGCATGGAAAGCATGGAGATAGAGGAGGACCTGGAGTC TCAGGATGGCCCCAGGAGCTCCTCGAAGCCTCCTACCCCATTCGATGCACAGTCAGAATTGCCGGCCGCAGCCGCTGGC TTCTCTGGCATTGCTGCACTGGAGAATCAAATGAAGATTGTCAACTCTGCTCTAAACCTGCAGCGGCAAAGCAGCTTGA AGTCCAGTGACAACGGCTCTACAGAGAGCGATGGCATGACGAACGATTCGTCTTCTGTGGCCGGAGATCCAGATTATCA GAATGGCCGCAGTCCTGCCGCCTCCGAGTCCACCTCGCTGCAGGCTCTATCCCCTGCCAACAGCCAAACTGAGAGCGTG AGGTCAAAGTCACCGAGCTTCACCAGCCAAGAAGATGTAGGCACGGGAAGTAAATCAGAGGGTCCTGAGAGTGCTCCTG GAGAGATGGAAGGGGTCGTTGCTTTGGATTTAACTTATGGCAACATTGGTCGGAAAGTCATTAAAGAAGAACCTGGGCT ACACTTTGCAAATGGAGAGTATGGTCGAAATAGTATTCCAGCTGCTTTTGTTAGAGCCCCGCCAGCCCTCATAAAAATG GAAATACCAAGTGAGCGTCCCATTAGCACTAGCCATTTCATTGGCCCACCAGCTCTCTCCCCTGGTGTTGCCCCTCTCC TTGTGCCACGACCGAAGTTCTGCCGTCCAGCCAAACAGCACATCTGCACTACGTGTGGGAAGAACTTCTCCTCTGCCAG TGCCCTGCAGATTCACGAGCGGACCCATACAGGGGAAAAGCCATTTGCCTGCACCATCTGTGGGAGAGCCTTTACAACG AAGGGGAACCTGAAGGTCCATGTAGGAACTCACATGTGGAATAATTCTGCCAGACGGGGAAGAAGGCTTTCAATTGATA ACCCCATGGCTCTACTGGGGAATGACCCCAAGAAGGTATCTGAAATGTTTCCCAAGGATATCGTGGCTCCTTCAGTGAG CATTGACCCCACAGTATGGAATCAGTACACAGCAGTGCTCAGCAATGGCATAGCAATGAAGACCAACGAGATCTCAGTG ATCCAAAGCGGCGGCTTACCGACCCTCCCAGTCACCGTTGCGGGTGGTTCGGCAATAAACACTGCGACGGTTTCCAAAA CGGATGGGACCCAGTCTGGGGCTGGTTCTGATACGGAAAAGGCCGGTGGTGCTGCTGCAGACAACGTGCCAAAACATCA ATTCCCTCTCTTCATGGAGGAGAACAAAATTGCCGTTAGTTAAGAACTCGAGTGAAGATGACGACAGAAAGAACAAATA TATATATACAAACATATATTTTAAGAGATTCCACTTCAGCCTCCTATTTTCCTATTGACGTGCAAATGATTTTATGGTT GTCTTTGTAAGATTTCGTTGCCCAGAGTACAATCATGGTATTGCTTTGCAAATAGTAAATAATAAAGAATAGGATTTCC TTTTATTTGGAAAGATGCGGGTCTTGCAAAGTAGTTCTTACGTGTGACTTTAATGTGTACAGCCTTACAGAAGTTTCTA CAACTTGAAATTCCAAAGGTTTAGATTATTTACCTCTTCATTTAGAGTGAAATACTTGGGGGTTTTGAATAGAGTGGAA ACAGCCTACTGTTGGTGGAGGAGCTTGTATTTACTGATGAGAAATGAAAGCTGTTAATGCGGGTAAATATCCTGGAATG TCTGCCACCCTCTTAGAAGTAGTTTTTCTGTTTGAATTTTTGGCTCTGTGTGATTTCTGAATGTACTTTTTTACTATAA TGGCGATAAAAATGACTTTTTTTTTAATTCCTTTTTGCCTCAGAAGTTCTATGAAAGGAAGTTGCTGTTTTTCTTCAAT CACTGCTTCTAAGGAATTCTGTTTTGTTGACTGCTGCTTATTTAATACTACTACTAGAACAGTCCTCCAAGTGTAGTGC CAAAATCCCTACTTCCAAAGATGTGCAGTTTTTCCTAGATGTTTTATTTCAGTACCAAGAGCCCAAAACAAACGTGGGT GGGTATGTATATACTTTTTTCTTTCTTGAAGGGAAGACTTGCCTTGGGAAGTCAGGTCTAAAAGCTCTGCAAGGAATCT CAGGTGACTGTTGTAATTGGGCATGGAAACTGCTTTCCTTAGCAAGAGACTTTGTTGGTTTTTGTTTTTTTAGTTTTAT TGTTTTTAATTTGAGTAATTTAGAAGATCAGTCTGTGTAAACCTGTATTTAAATATGAAGTATTCATGCTTAGGTTAAA TGTTTTTTGGGTTTTGGATGGCATTCCTACTCTGGTCATTAAGTTTCTTGGTGGTCTGTGAAGTTACATTCTGCCAAAA AGGTAATTAATGATCCGTGCGTATTGTATGAAGGTTGCTGGGATGGTCATCTGGATTCTAAGTTATCTACCTCATTTTT TTTTCTTTTTGTAGATGTAGTGTCTATTTTTCTATTAATGACCACTGTAATAAACTGAGATTCAAGCAGATGCTTCCAT GCACTATCTGAAACCAAAACCTGATGTATTAGTGGAAGCACCTGAAGACTTACTGGACTGACCTTTCACTATTCCTCTG ATGTGTGCTGGAACTGTCGTGTAATGGGATCTAAAGCAGACTGGAAATAGCGTTTGGTAAAGAAGGACTGAGTGATGGG AAGAAGTCTTTGTGGACCGCAGGAAATCAAGTCCAGTCTCTGTTGTGAAAGGCTCCAAAAGTACAGATTACCAAAAGTT TGTGTAATGTTGTTGCACCTGACTCTTGCTTATGATCTCTGTATGCCGAGTTATGCCTTTCCTGCTGGACTTGTAAGTG AGAACATACCAGTACCTGTTTACACTGTAAGATGGATATTGTTACATGGAACATGCAAAAGGCATCCCTGTTGTCAAGT TTTCTGCATTGTGAATGTATGACTTTTATGTAAGAACTGTAGTTTTTGAGTATCTACTGACAAGTTTCTGTTGACATTT TGAGAATAAATTTTGGGATGGCTTTTTCACAAAAAAAAAAAAAAAA
Citation	Barembaum M, Bronner-Fraser M. Spalt4 mediates invagination and otic placode gene expression in cranial ectoderm. Development. 2007 Nov;134(21):3805-14.
Copyright	Published by The Company of Biologists 2007
Comments	According to the authors, "We cloned the complete coding region of Spalt4 into pCIG, which drives expression through a chicken actin promoter and CMV enhancer (Megason and McMahon, 2002)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (NM_001080872).