GEISHA - A Chicken Embryo Gene Expression Database
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PAX9
paired box 9

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolPAX9
Official Full Namepaired box 9
CGNC ID49451
also known asChPax9, PAX-9, paired box protein Pax-9|paired box gene 9, Paired box protein Pax-9
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204912
PolypeptideNP_990243
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.45
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human5083ENSG00000198807MIM:106600MIM:167416
Mouse18511ENSMUSG00000001497All phenotypic alleles (7):Targeted, knock-out(2) Targeted, other(5) MGI:97493
Xenopus100485934, 378646, 100270674, 398655482237, 5934626
Zebrafish30558ENSDARG00000053829ZDB-GENE-980526-399ZFIN:ZDB-GENE-980526-399
Gene Ontology
Molecular FunctionDNA binding
Biological Processmulticellular organismal development, regulation of transcription, DNA-templated, more...transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395740
Ensembl GeneENSGALG00000010114
KEGGgga:395740

Entry 1

GEISHA IdPAX9.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-AACCACATCTACTCCTACCC-3’
Reverse cDNA Template Primer5’-AATTAACCCTCACTAAAGGACGTGATCTCAATAGCAGTG-3’cDNA Template Length1000
Complete cDNA Template Probeshow
AACCACATCTACTCCTACCCCAGCCCCATCGCTGCCGCGGGAGCCAAGGTGCCCACGCCTCCGGGAGTGCCTGCCATCC
CTGGTACCATGGCCATGCCTCGCACCTGGCCTTCGTCCCACTCGGTGACGGACATCCTGGGCATCCGCTCCATCACGGA
CCAAGTGAGCGACACCTCGTCGTACCCCAGCCCCAAGGTGGAGGAGTGGAGCAGCCTGGGCCGGAGCAGCTTCCCCGCT
GCAGCCCAGCATGCCGTGAACGGGCTGGAGAAGAGCTCCCTGGAACAGGAGGCCAAGTACAGCCAGGCACACAATGGCC
TCCCAGCAGTTGGAAGCTTTGTATCAGCACCAGCCATGTCTCCCTACGCCACGTCGGCTCAGGTGTCACCCTACATGCC
ATACAGCGCAGCTCCCTCCAGCTACATGGCAGGCCATGGTTGGCAGCATACTGCAGGCACGCCTCTCTCCCCTCATGGC
TGTGACCTCCCTGCCTCGCTGGCCTTCAAGGGCGTGCAGACAGCCAGGGAAGGCAGCCACTCAGTCACGGCCTCCGCTC
TCTGATGCAGGAGTTGCTCCAGGCCAAGCGTCCCCAGCACCGGGCTCACAGACTGCTCTCCTCATGCTGGTGGAACTGG
GTCTTTCCCCTCCTGACTTGTCTCCTGCAGGACTTTTCGGGACTGAAAGAGCTGAAGGCAGCATCAGAAGCAGAGGGGA
GCGTGCTGATGCCCTTGCACTCTCTAAGATCTTGTGTCCCTCAAAGGGCCCGTGGAAACTTGTATAACACTCCTCTGGT
CAAACCACACATATTTATTCTTAATCACCACAGAGTTGTTAAATGTGCAATTGTTGTTAAGATTTGTGTAGAAATCAAT
AAAGAAAACTAATCACAGGAAATTCTGCCACGCCTCAAATCAGCAAAGGTGGTTAAATTAAAGGTATTTGCCAATGACC
TGTCTCTAGAGCACAAATAAGGTTATGCGATCCACTGCTATTGAGATCACGT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 10
stage 10
Head Mesenchyme
Pharynx
Unlabeled
 
13-18
stage 13
stage 13
stage 13
stage 18
stage 18
stage 18
Head Mesenchyme
Pharyngeal Arches and Clefts
Pharynx
Sclerotome
 
19-24
stage 20
stage 23
stage 23
stage 23
stage 23
stage 24
Head Mesenchyme
Leg Mesenchyme
Lung
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Pharynx
Sclerotome
 
25-26
stage 26
Head Mesenchyme
Leg Mesenchyme
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme
 

Entry 2

GEISHA IdPAX1.Christ.2007Data SourcePublication
Complete cDNA Template Probeshow
CGTCCGCTGCCCAACGCCATCCGCCTGCGGATCGTGGAGCTGGCCCAGCTCGGCATTCGACCGTGCGACATCAGCCGCC
AGCTGCGGGTCTCGCACGGCTGCGTCAGCAAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCAT
CGGAGGCAGCAAGCCGCGGGTCACCACCCCCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATC
TTCGCCTGGGAGATCCGCGACCGGCTGCTGGCCGACGGCGTC
CitationChrist B, Huang R, Scaal M. Amniote somite derivatives. Dev Dyn. 2007 Sep;236(9):2382-96.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #X82442).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Sclerotome
Somites
 

Entry 3

GEISHA IdPAX1.Wang.2005Data SourcePublication
Complete cDNA Template Probeshow
CGTCCGCTGCCCAACGCCATCCGCCTGCGGATCGTGGAGCTGGCCCAGCTCGGCATTCGACCGTGCGACATCAGCCGCC
AGCTGCGGGTCTCGCACGGCTGCGTCAGCAAGATCCTGGCCCGCTACAACGAGACCGGCTCCATCCTGCCCGGAGCCAT
CGGAGGCAGCAAGCCGCGGGTCACCACCCCCAACGTGGTCAAGCACATCCGCGACTACAAGCAGGGAGACCCCGGCATC
TTCGCCTGGGAGATCCGCGACCGGCTGCTGGCCGACGGCGTC
CitationWang B, He L, Ehehalt F, Geetha-Loganathan P, Nimmagadda S, Christ B, Scaal M, Huang R. (2005) The formation of the avian scapula blade takes place in the hypaxial domain of the somites and requires somatopleure-derived BMP signals. Dev Biol. 2005 Nov 1;287(1):11-8. Epub 2005 Oct 3.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (X82442).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-28
stage 27
stage 28
Somites
Wing
Scapula

Entry 4

GEISHA IdPax‐9.LeClair.1999Data SourcePublication
Complete cDNA Template Probeshow
CCCGTGGAAACTTGTATAACACTCCTCTGGTCAAACCACACATATTTATTCTTAATCACCACAGAGTTGTTAAATGTGC
AATTGTTGTTAAGATTTGTGTAGAAATCAATAAAGAAAACTAATCACAGGAAATTCTGCCACGCCTCAAATCAGCAAAG
GTGGTTAAATTAAAGGTATTTGCCAATGACCTGTCTCTAGAGCACAAATAAGGTTATGCGATCCACTGCTATTGA
CitationLeClair EE, Bonfiglio L, Tuan RS. Expression of the paired-box genes Pax-1 and Pax-9 in limb skeleton development. Dev Dyn. 1999 Feb;214(2):101-15.
CopyrightCopyright © 1999 Wiley‐Liss, Inc.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in LeClair et al. 1999.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 23
stage 24
Leg
Limb Buds
Pharyngeal Arches and Clefts
Somites
 
25-30
stage 27
stage 27
stage 28
stage 29
stage 29
stage 29
stage 29
stage 29
stage 29
Leg
Leg Bones
Limb Buds
Sclerotome
Wing
 
31-44
stage 44
stage 44
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.45

Mouse

EmageMGI:97493
EurexpressMGI:97493
MGI GXDMGI:97493

Frog

Xenbase482237, 5934626

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-399
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