Quick Search
X XI XII XIII XIV 1 2 3 4 5 6 7 8 9 10 11 12
13 14 15 16 17 18 19 20 21 22 23 24
25 26 27 28 29 30 31 32 33 34 35 36
37 38 38 40 41 42 43 44
Gene Family QuickSearch
Human Disease Gene Search
PAX7 The human orthologue of this gene is associated
Gene Summary Expression Transcript Levels Other Species Expression JBrowse Gene Official Symbol PAX7 Official Full Name paired box 7 CGNC ID 49563 also known as PAX-7, paired box protein Pax-7|paired box gene 7, PAX7, paired box gene 7 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
Entry 1 GEISHA Id Pax7.Amthor.2006 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Amthor H, Otto A, Macharia R, McKinnell I, Patel K. Myostatin imposes reversible quiescence on embryonic muscle precursors. Dev Dyn. 2006 Mar;235(3):672-80. Copyright Copyright © 2006 Wiley-Liss, Inc. Comments Insufficient information provided to verify exact probe sequence. Sequence was obtained from NCBI (NM_205065).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24
stage 22
stage 22
Wing 25-26 stage 26
stage 26
Wing
Entry 2 GEISHA Id Pax7.Ahmed.2006 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Ahmed MU, Cheng L, Dietrich S. Establishment of the epaxial-hypaxial boundary in the avian myotome. Dev Dyn. 2006 Jul;235(7):1884-94. Copyright Copyright © 2006 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205065).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 22
stage 22
stage 24
Dermatome Myotome 25 stage 25
Dermatome Myotome
Entry 3 GEISHA Id PAX7.Bothe.2007 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Bothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409. Copyright Copyright © 2007 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205065).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 24
stage 24
Myotome Somites
Entry 4 GEISHA Id PAX7.Aglyamova.2007 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Aglyamova GV, Agarwala S. Gene expression analysis of the hedgehog signaling cascade in the chick midbrain and spinal cord. Dev Dyn. 2007 May;236(5):1363-73 Copyright Copyright © 2007 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205065).
Entry 5 GEISHA Id PAX7.Agarwala.2005 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Agarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21. Copyright Copyright © 2005 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205065).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-26 stage 26
Midbrain
Entry 6 GEISHA Id PAX7.Firnberg.2002 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Firnberg N, Neubüser A (2005).FGF signaling regulates expression of Tbx2, Erm, Pea3, and Pax3 in the early nasal region. Dev Biol. 2002 Jul 15;247(2):237-50. Copyright "Reprinted from Developmental Biology, 247(2), Firnberg N, Neubüser A, FGF signaling regulates expression of Tbx2, Erm, Pea3, and Pax3 in the early nasal region, 237-50., Copyright (2002), with permission from Elsevier".
Copyright © (2002) Elsevier B.V. All rights reserved. Comments According to authors, "The plasmids used to prepare the antisense riboprobes employed in this study have previously been described: (refs)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205065).
Entry 7 GEISHA Id PAX7.Khudyakov.2009 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Khudyakov J, Bronner-Fraser M. Comprehensive spatiotemporal analysis of early chick neural crest network genes. Dev Dyn. 2009 Mar;238(3):716-23. Copyright Published Online: 22 Feb 2009
Copyright © 2009 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205065).
Entry 8 GEISHA Id PAX7.Basch.2006 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Basch ML, Bronner-Fraser M, García-Castro MI. Specification of the neural crest occurs during gastrulation and requires Pax7. Nature. 2006 May 11;441(7090):218-22. Copyright Copyright © 2006, Nature Publishing Group
Entry 9 GEISHA Id Pax7.Ezin.2009 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Ezin AM, Fraser SE, Bronner-Fraser M. Fate map and morphogenesis of presumptive neural crest and dorsal neural tube. Dev Biol. 2009 Jun 15;330(2):221-36. Epub 2009 Mar 28. Copyright Copyright © 2009 Published by Elsevier Inc. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205065).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7 stage 7
stage 7
Neural Crest
Entry 10 GEISHA Id PAX7.SzaboRogers.2009 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Szabo-Rogers HL, Geetha-Loganathan P, Whiting CJ, Nimmagadda S, Fu K, Richman JM. Novel skeletogenic patterning roles for the olfactory pit. Development. 2009 Jan;136(2):219-29. Epub 2008 Dec 4. Copyright Published by The Company of Biologists 2009. This material is protected by a copyright retained by the authors. Permission requested from Dr. Richman. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205065.1 ).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 15
stage 15
stage 18
stage 18
stage 18
stage 18
stage 18
Nasal Placode/Nerve
Entry 11 GEISHA Id PAX7.Lorente-Cánovas.2012 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Lorente-Cánovas B, Marín F, Corral-San-Miguel R, Hidalgo-Sánchez M, Ferrán JL, Puelles L, Aroca P. Multiple origins, migratory paths and molecular profiles of cells populating the avian interpeduncular nucleus. Dev Biol. 2012 Jan 1;361(1):12-26. Copyright Copyright © 2011 Elsevier Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205065.1).
Entry 12 GEISHA Id PAX7.Ohyama.2008 Data Source Publication Complete cDNA Template Probe show ANCNTNATNNCATNTACTNCTNTTNCATANNCACCNANCNTNATNNCATNTACTNCTNTTNCATANNCACCNCCGGAGC
Citation Ohyama K, Das R, Placzek M. Temporal progression of hypothalamic patterning by a dual action of BMP. Development. 2008 Oct;135(20):3325-31. Epub 2008 Sep 11. Copyright requested from MP Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_205065.1)
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7-12 stage 9
Diencephalon 13-18 stage 14
25-30 stage 30
Diencephalon
Entry 13 GEISHA Id PAX7.Bobak.2009 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Bobak N, Agoston Z, Schulte D. Evidence against involvement of Bmp receptor 1b signaling in fate specification of the chick mesencephalic alar plate at HH16. Neurosci Lett. 2009 Sep 25;461(3):223-8. Epub 2009 Jun 16 Copyright Reprinted with permission from Elsevier.
Copyright © 2009 Elsevier B.V. All rights reserved.
Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205065.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-16 stage 16
stage 16
Midbrain
Entry 14 GEISHA Id PAX7.Davey.2006 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Davey MG, Paton IR, Yin Y, Schmidt M, Bangs FK, Morrice DR, Smith TG, Buxton P, Stamataki D, Tanaka M, Münsterberg AE, Briscoe J, Tickle C, Burt DW. The chicken talpid3 gene encodesa novel protein essentialfor Hedgehog signaling. Genes Dev. 2006 May 15; 20(10): 13651377. Copyright Copyright © 2006, Cold Spring Harbor Laboratory Press Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205065.1 ).
Entry 15 GEISHA Id PAX7.Ferran.2007 Data Source Publication Complete cDNA Template Probe show GACCAAGAACGTGAGCCTGTCCACGCAGCGCAGGATGAAGCTGGGAGAACATTCGGCCGTTCTGGGGCTCCTACCAGTA
Citation Ferran JL, Sánchez-Arrones L, Sandoval JE, Puelles L. A model of early molecular regionalization in the chicken embryonic pretectum. J Comp Neurol. 2007 Dec 1;505(4):379-403. Copyright Copyright © 19992012 John Wiley & Sons, Inc. All Rights Reserved. Comments The sequence below was obtained from NCBI (acc #:NM_205065.1 - Showing 422 bp region from base 1,659 to 2,071) using the information provided in the publication.
Entry 16 GEISHA Id PAX7.Litsiou.2005 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Litsiou A, Hanson S, Streit A. A balance of FGF, BMP and WNT signalling positions the future placode territory in the head. Development. 2005 Sep;132(18):4051-62. Epub 2005 Aug 10 Copyright Authors hold the copyright. Published by the Company of Biologists Ltd. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205065.1
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 4-6 stage 6
Neural Crest 7-8 stage 7
stage 7
stage 8
stage 8
Neural Crest
Entry 17 GEISHA Id PAX7.Yamamoto-Shiraishi.2013 Data Source Publication Forward cDNA Template Primer CAAAACTTCTGGTGTTCCACGC Reverse cDNA Template Primer AATTAACCCTCACTAAAGGGCAGTGTGTCCCGTAAGGTGATAC cDNA Template Length 900 Complete cDNA Template Probe show GGTGCAAACCAACTCGCAGCATTCAACCATCTGCTGCCAGGGGGATTCCCACCCACGGGAATGCCAACTCTGCCCCCGT
Citation Yamamoto-Shiraishi Y, Kuroiwa A. Wnt and BMP signaling cooperate with Hox in the control of Six2 expression in limb tendon precursor. Dev Biol. 2013 May 15;377(2):363-74 Copyright © Elsevier Inc. All rights reserved Comments The complete cDNA template sequence was obtained from the information provided in the publication as described in Yamamoto-Shiraishi et al. 2005.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-30 stage 26
stage 30
Leg Leg Mesenchyme all
Entry 18 GEISHA Id Pax-7.Goulding.1994 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Goulding M, Lumsden A, Paquette AJ. Regulation of Pax-3 expression in the dermomyotome and its role in muscle development. Development. 1994 Apr;120(4):957-71. Copyright © 1994 by Company of Biologists Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205065).
Entry 19 GEISHA Id Pax7.Otto.2006 Data Source Publication Complete cDNA Template Probe show CCGGAGCGCCCGCTCAGGCCGGTTGTGACATAGCCCGAAAACTTTCCGAGGGATTTCTGCCGCGGGCTGGGAGACCGCC
Citation Otto A, Schmidt C, Patel K. Pax3 and Pax7 expression and regulation in the avian embryo. Anat Embryol (Berl). 2006 Aug;211(4):293-310. Copyright Copyright © Springer-Verlag 2006 Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205065.1)
Data from NCBI Unigene EST ProfileGga.555
Mouse Frog Fruit Fly Zebra Finch Zebrafish
