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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PBX1
PBX homeobox 1

The human orthologue of this gene is associated
with the following human disease:

Leukemia, acute pre-B-cell

Gene

Official Symbol	PBX1
Official Full Name	PBX homeobox 1
CGNC ID	49353
also known as	PBX1A, pre-B-cell leukemia transcription factor 1\|pre-B-cell leukemia homeobox 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204746
Polypeptide	NP_990077

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	32567			FBgn0000611
Human	5087	ENSG00000185630	MIM:176310	MIM:176310
Mouse	18514	ENSMUSG00000052534	All phenotypic alleles (7):Targeted, knock-out(3) Targeted, other(4)	MGI:97495
Xenopus	100216094, 399184			1217591
Zebrafish	58138, 570960	ENSDARG00000089610, ENSDARG00000089550	ZDB-GENE-000405-1, ZDB-GENE-070424-11	ZFIN:ZDB-GENE-000405-1, ZFIN:ZDB-GENE-070424-11

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395505
Ensembl Gene	ENSGALG00000003429
KEGG	gga:395505

Entry 1

GEISHA Id	PBX1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GGACCAGAGTTTGGACGAGGC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGTTGGGAGTTGAGGGTGAGTTAGC	cDNA Template Length	828
Forward cDNA Template Probe	show CCACTGGACATCATGCTACAAGGAATAGTCGTTTTATCGGTGGTACCTTGCGTTTTCTTGCAACATAGGAATANTGAGG CCTCCATCTCTGCTCTCTCTTACACAAGTGTACCTACGTCGCCCACCGGTATCTCCTCTAATTTCCTGACAGTTGATTA AATCGCGGTGGACCCGGGACGCCCCTTCCCTGGATAAACGTTGGTGGGCTCCCACCGGGGGAGGGCTGCCGATAGGAAA AAAAAGTCCTTTACTCTTTGGAGCCTCGATTTAAATTTTTCTGTTCCACCTCGGGCAGATCTAACACGGAGAGCTGGAT ATGTACAAGCTCGCGTGCGACTTATTCTCCACCCACCTGATGAAGCTGCTGCATTGAGCAGAGCCAGACCCCCCCCATC CCTCCATATCACATAGGGCGAATGGTGAGGATCATCCTCCGCCAGTTCAGCTGCTTCCATATGCGGTTGAGGCAAATTC ATGTGTGCCGCCGCCATGATCTTCCGCTCTCGATTTCTGAACTCACGGAGAAGGAGAAGAATCTTCCTCTAGCAGGCAT ACTGCCCCCCCGATTGAGTATTTCGAGTCCCCTCACAGCGACCCTTGCCCCAGTGAAGAAGCCAAAAAACACCTCCTTT TCAAATGTGGCAACACCCTCTCACAGGTATCAATGTGTTTTAGAAATAAAAAAATCGGGTCCGGGGAAACACATTCTTA GATCTCCCCGAGGACGCCCAATTTTTGTTCTCTCTAAAGTTCCAGACAAAAATAAAAAAGTGCCCGCCTTTGCTCGTGG GGGTTTTTAACCTGTATTCTCGGGCCCTTCTCTGAAGGTAAAATAAGGCCAAAA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Epiblast
Extraembryonic Mesoderm
Primitive Streak

13-18

stage 13

stage 16

stage 18

Widespread Expression

19-24

stage 19

stage 22

Widespread Expression

stage 25

Widespread Expression

Entry 2

GEISHA Id	PBX1.Huber.2012	Data Source	Publication
Complete cDNA Template Probe	show AGGCTGCGGGGAGGAGGGGGGGGGAGAAGGAAAGAAGAAGAAGAAAGCGAGCAAGAAAAGAAAGCGCGGAGCCAGGCGG GCAGCCCAGCCGCCGCGGCCGGCAGCCAGCAGGGAGGCGGCGGAGCGGGAGCCGGCGGCCGGAGATGGACGAGCAGCCG CGGCTGATGCACACGCACAGCGGGGTGGGGATGCCGGGCCACCCGGGCCTGTCCCAGCACATGCAGGATGGACCAGGCG GNGCGGAGGGGGAGGCAGGCAGGAAGCAGGACATCGGAGACATCTTACAGCAGATCATGACCATCACGGACCAGAGTTT GGACGAGGCGCAGGCCAGGAAACACGCTTTAAACTGCCACAGGATGAAGCCGGCTCTTTTTAATGTCTTGTGTGAAATC AAAGAGAAAACAGTGCTGAGCATCCGGGGAGCGCAGGAAGAGGAGCCCACGGACCCTCAGCTGATGCGGTTAGACAACA TGCTGCTGGCTGAGGGCGTCGCTGGCCCTGAGAAAGGAGGGGGCTCTGCTGCTGCTGCCGCTGCCGCCGCCGCATCGGG AGGAGCCGGATCCGACAACTCGGTGGAGCACTCCGACTACAGAGCCAAGCTGTCCCAGATCCGGCAGATCTACCACACA GAGCTGGAGAAGTACGAGCAGGCGTGCAACGAATTCACCACCCACGTGATGAACCTGCTGCGTGAGCAGAGCCGGACCC GGCCCATCTCACCAAAGGAGATAGAGCGGATGGTGAGCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGTTGAA GCAAAGCACGTGTGAAGCCGTCATGATCTTGCGCTCCCGATTTCTGGACGCACGGCGGAAGAGAAGAAACTTCAACAAG CAGGCTACGGAAATCCTGAATGAGTATTTCTATTCCCATCTCAGCAACCCTTACCCCAGTGAGGAAGCCAAAGAAGAGC TAGCCAAGAAATGTGGCATCACAGTCTCACAGGTATCAAACTGGTTTGGAAATAAGAGAATCCGGTACAAGAAGAACAT AGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACGGCTGTCACGGCTACCAATGTGTCAGCCCATGGAAGC CAGGCTAACTCACCCTCAACTCCCAATTCAGCTGGTTCTTCCAGTTCTTTTAACATGTCAAACTCTGGAGATTTGTTCA TGAGCGTGCAGTCTCTCAATGGGGATTCTTACCAAGGGGCCCAGGTTGGAGCCAACGTGCAGTCACAGGTGGATACCCT TCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCAAGTCAGATGTATAGTCCGCAGGGCATCAGT GCTAATGGAGGTTGGCAAGACGCTACTACCCCATCGTCGGTGACCTCCCCCACAGAAGGCCCTGGCAGCGTTCACTCTG ATACCTCCAACTGATCTCCCAGCAAATTGCATCCCTGGCTGAGCCAGCCCCGGCGGGGCGGGAGGGGAGGGGGCCTCTC CTAACACCGCAGCAGTCAGACTGGAGGTGAAACCAATCAGCACACAGAAGAAGACTCCTTCTCTTCTCTTCGTCGGGAT GCTTTTTTCAGCCAATCTGGACACTTCTTTATACTCTCTTCCTTTCTTTTCTGGGTAGAAGCCGCTCTCCCCCCCTTGC CGCCGCCGCCACAACACCTCCCTCCCTCCACCTCCCCACCGAAGGATATTTCGACAGCTAGAAGGATCTTAAGGAGGAA AAGCAAAAAACAACCACCGCCACGCCAACTGAACCAAAAGCAGTGCATGGCCTCGCACTGAGCCAAAACCATACCTCGA G
Citation	Huber L, Ferdin M, Holzmann J, Stubbusch J, Rohrer H. HoxB8 in noradrenergic specification and differentiation of the autonomic nervous system. Dev Biol. 2012 Mar 1;363(1):219-33. Epub 2011 Dec 24.
Copyright	Copyright © 2011 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204746.1).