Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

PCDH7
protocadherin 7

Gene

Official Symbol	PCDH7
Official Full Name	protocadherin 7
CGNC ID	51827
also known as	protocadherin-7\|BH-protocadherin (brain-heart)
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_420748
Polypeptide	XP_420748

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	5099	ENSG00000169851		MIM:602988
Mouse	54216	ENSMUSG00000029108		MGI:1860487
Xenopus	100124985, 100337580			1007356
Zebrafish	555504	ENSDARG00000060610	ZDB-GENE-081104-299, ZDB-GENE-120206-1, ZDB-GENE-081104-299	ZFIN:ZDB-GENE-081104-299, ZFIN:ZDB-GENE-120206-1, ZFIN:ZDB-GENE-081104-299

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	422797
Ensembl Gene
KEGG	gga:422797

Entry 1

GEISHA Id	PCDH7.Lin.2012	Data Source	Publication
Complete cDNA Template Probe	show TCTTCGAGGGCCGGGTCATCATCCTGGACATCAACGACAACACCCCCACCTTCCCTTCTCCTGTCCTCACGCTCACCGT GGAGGAGAACCGGCCCGTGGGGACCCTCTACCTACTCCCCACCGCCACCGATAGGGATTTCGGCCGCAACGGCATCGAG CGCTACGAGCTGCTTCAGGAGCCCGGCGGGGACGGGGGACGGCGCGGCGGCGGCGGGGGCGGCGGGGGCGGCGGCGGCG GCGGCGGCGGCGGGGGCGGTGCGGCGGCGGCCGGCCCGGAGAGCGCCCTCTACCCCAGCGGCAGCAAGCGGAGGCAGGA AGCGGAGGCCCGCAGCAGCGTGTTTGAGCTGCAGGTGGCCGACACCCTGGACGGGGAGAAGCAACCGCAGCTGATCGTC AAGGGGGCGCTAGACCGGGAGCAGCGGGACTCCTACGAACTGAGCCTGCGCGTGCGCGACGGCGGCGAGCCCGCGCGTT CCTCGCAGGCCATCTTGCGGGTGCTGATCACCGACGTGAACGACAACAGCCCCCGCTTCGAGAAGAGTGTCTACGAGGC CGACCTGGCGGAGAACAGCAGCCCCGGGACCCCTATCCTGCAGCTGCGAGCCGCTGACCTGGATGTAGGGGTGAACGGG CAAATCGAGTATGTCTTTGGGGCAGCCACTGAGTCAGTGAGGCGGCTGCTGCGGCTGGATGAGACCTCAGGCTGGCTTA GTGTCCTGCACCGCATTGACCGTGAGGAGGTTAACCAGCTGCGCTTCACCGTGATGGCCCGGGACCGTGGGCAGCCCCC TAAGACAGACAAGGCCACGGTGGTGCTGAACATCCGTGATGAGAATGACAATGTGCCCACCATCGATATCCGAAAGATT GGGCGCATCCCACTACGGGATGGAGTGGCCAGCGTGGCTGAGGACGTGCTGGTGGATACCCCCATTGCCCTGGTGCAGG TGTCAGACCGGGACCAAGGCGAAAATGGTGTGGTGACCTGCACTGTGGTGGGAGATGTGCCCTTTCAGCTCAAGCCAGC CAGTGAGGGTGAAGGGGAGCCACAGAACAAGCGCAAGTACTTCCTCCACACCTCAGCCCCTCTGGACTATGAGGCAGTG CGTGACTACAATGTGGTGATCGTAGCCGTGGACTCAGGCAGCCCTAGCTTGTCCAGCAACAACTCCTTGCTGGTGCGGG TCGCAGACACTAATGACAACCCTCCTGTGTTTGGCCAGGCTGTACTGGAGGTCTCTTTCCCAGAGAACAATCTGCCTGG TGAGAGGGTGGCCACGGTGGTGGCCACAGATGCGGACAGCGGCAAGAATGCTGAGCTCACCTACTCCCTGGAGCCCTCA CCCCTCTCCTCGGAGTCACCGAGCGGCATCTTCAGCATTGACCCTGACTCTGGGGATGTGTCTGTGCAGGTGGTGCTGG ACCGTGAGCAGCGTGACACCTATGAGTTCCAAGTGACGGCCCGAGACAAGGGGGTACCATCACTGCAGGGCTCCACCAT GGTGGTGGTGCGGGTGGCGGATCGCAATGACAATGAACCGCGCTTCATGCAGGATGTGTTCACTTTCTATGTGAAGGAG AACCTGCAGCCCAACAGCCCCGTGGGCATGGTGACTGTGATGGACTTTGACAAGGGGCGCAATGCTGAGCTCAGCCTCT CCATACAGCCCAGTGAACATGACCAGGCAACTGGCATCTTCTCTATTGAAAATGACACAGGAACAATCTACTCCACAGT CTCATTTGACCGGGAGCAGCAGACCAGCTACACCTTCAAAGTGAAGGCTGTGGATGGGGGTGA
Citation	Lin J, Wang C, Redies C Expression of delta-protocadherins in the spinal cord of the chicken embryo. J Comp Neurol. 2012 May 1;520(7):1509-31.
Copyright	Copyright © 2011 Wiley Periodicals, Inc.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in the paper.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Spinal Ganglia and Nerves

19-24

stage 20

stage 24

Notochord
Spinal Cord

Cdh7: green
Pcdh7: red
Pcdh8: green

25-30

stage 29

stage 30

Spinal Cord
Spinal Ganglia and Nerves

Cervical section of the spine.
Higher magnification of boxed area in D.
Higher of magnification of boxed area in G.
Immunostaining: Islet1 in red
In situ hybridization: PC7 in green
PC7: green fluorescence
Sacral section of the spine.
Thoracic section of the spine.
dh, dorsal horn

31-36

stage 34

stage 36

Spinal Cord
Spinal Ganglia and Nerves

Higher magnification of boxed area in I.
Higher magnification of boxed area in K.
gm, gray matter
lm, lateral motor column

Entry 2

GEISHA Id	PCDH7.Lin.2013	Data Source	Publication
Complete cDNA Template Probe	show TCTTCGAGGGCCGGGTCATCATCCTGGACATCAACGACAACACCCCCACCTTCCCTTCTCCTGTCCTCACGCTCACCGT GGAGGAGAACCGGCCCGTGGGGACCCTCTACCTACTCCCCACCGCCACCGATAGGGATTTCGGCCGCAACGGCATCGAG CGCTACGAGCTGCTTCAGGAGCCCGGCGGGGACGGGGGACGGCGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGGCGGCG GTGGCGGCGGCGGCGGGGGCGGTGCGGCGGCGGCCGGCCCGGAGAGCGCCCTCTACCCCAGCGGCAGCAAGCGGAGGCA GGAGGCGGAGGCCCGCAGCAGCGTGTTTGAGCTGCAGGTGGCCGACACCCTGGACGGGGAGAAGCAACCGCAGCTGATC GTCAAGGGGGCGCTAGACCGGGAGCAGCGGGACTCCTACGAACTGAGCCTGCGCGTGCGCGACGGCGGCGAGCCCGCGC GTTCCTCGCAGGCCATCTTGCGGGTGCTGATCACCGACGTGAACGACAACAGCCCCCGCTTCGAGAAGAGTGTCTACGA GGCCGACCTGGCGGAGAACAGCAGCCCCGGGACCCCTATCCTGCAGCTGCGAGCCGCTGACCTGGATGTAGGGGTGAAC GGGCAAATCGAGTATGTCTTTGGGGCAGCCACTGAGTCAGTGAGGCGGCTGCTGCGGCTGGATGAGACCTCAGGCTGGC TTAGTGTCCTGCACCGCATTGACCGTGAGGAGGTTAACCAGCTGCGCTTCACCGTGATGGCCCGGGACCGTGGGCAGCC CCCTAAGACAGACAAGGCCACGGTGGTGCTGAACATCCGTGATGAGAATGACAATGTGCCCACCATCGATATCCGAAAG ATTGGGCGCATCCCACTACGGGATGGAGTGGCCAGCGTGGCTGAGGACGTGCTGGTGGATACCCCCATTGCCCTGGTGC AGGTGTCAGACCGGGACCAAGGCGAAAATGGTGTGGTGACCTGCACTGTGGTGGGAGATGTGCCCTTTCAGCTCAAGCC AGCCAGTGAGGGTGAAGGGGAGCCACAGAACAAGCGCAAGTACTTCCTCCACACCTCAGCCCCTCTGGACTATGAGGCA GTGCGTGACTACAATGTGGTGATCGTAGCCGTGGACTCAGGCAGCCCTAGCTTGTCCAGCAACAACTCCTTGCTGGTGC GGGTCGCAGACACTAATGACAACCCTCCTGTGTTTGGCCAGGCTGTACTGGAGGTCTCTTTCCCAGAGAACAATCTGCC TGGTGAGAGGGTGGCCACGGTGGTGGCCACAGATGCGGACAGCGGCAAGAATGCTGAGCTCACCTACTCCCTGGAGCCC TCACCCCTCTCCTCGGAGTCACCGAGCGGCATCTTCAGCATTGACCCTGACTCTGGGGATGTGTCTGTGCAGGTGGTGC TGGACCGTGAGCAGCGTGACACCTATGAGTTCCAAGTGACGGCCCGAGACAAGGGGGTACCATCACTGCAGGGCTCCAC CATGGTGGTGGTGCGGGTGGCGGATCGCAATGACAATGAACCGCGCTTCATGCAGGATGTGTTCACTTTCTATGTGAAG GAGAACCTGCAGCCCAACAGCCCCGTGGGCATGGTGACTGTGATGGACTTTGACAAGGGGCGCAATGCTGAGCTCAGCC TCTCCATACAGCCCAGTGAACATGACCAGGCAACTGGCATCTTCTCTATTGAAAATGACACAGGAACAATCTACTCCAC AGTCTCATTTGACCGGGAGCAGCAGACCAGCTACACCTTCAAAGTGAAGGCTGTGGATGGGGGTGA
Citation	Lin J, Wang C, Redies C. Expression of multiple delta-protocadherins during feather bud formation. Gene Expr Patterns. 2013 Mar-Apr;13(3-4):57-65. Epub 2013 Jan 11.. DIO: 10.1016/j.gep.2013.01.001.
Copyright	Copyright © 2013 Elsevier B.V. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Lin et al. 2013.