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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PDLIM1
PDZ and LIM domain 1

Gene

Official Symbol	PDLIM1
Official Full Name	PDZ and LIM domain 1
CGNC ID	4041
also known as	PDZ and LIM domain protein 1\|PDZ and LIM domain 1 (elfin), PDZ and LIM domain protein 1 (Elfin), LIM domain protein CLP-36, C- terminal LIM domain protein 1, PDLIM1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_426503
Polypeptide	XP_426503
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.5362

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	9124	ENSG00000107438		MIM:605900
Mouse	54132			MGI:1860611
Xenopus	394527, 398648			1004690
Zebrafish	550568	ENSDARG00000019845	ZDB-GENE-030131-5227	ZFIN:ZDB-GENE-030131-5227

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428948
Ensembl Gene
KEGG	gga:428948

Entry 1

GEISHA Id	ChEST912p18	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CGATGAGGCAAATCCCTTCCTTTGCGCTCCCTACAAAACACCAGTGCTCCTCCAGCCAAGCTGGAGGCGGATTGTGTTG GTTCTCGGCTGCAGGGCAGCTCGTTTTGACCACTTAATGGAGGTTTGCCTATACAAGAGTTTCTCCCCTTGTTCCTATG CCCTCTGCTGAGAATCAAAAATAAAAACCACGGAAAGCTTTTGCAGCGCTGTTGGCATCTGGTAGCTCTGAGAGGATAC ATGCCACACTTCCTTCCTTTCCTAAGCACTCCAGGAGTTATGAACAGGAAATAAGGCACATAGGAAGTGCACACAACCG GAGCGCGGTCCCCTTCACTGCTGCCACGGCTTCTGCCCCCAAGGTGATCACTGCTCAGTACAACAGCCCAGCGGGCCTC TACTCCTCAGAAAACATCCAGACCTTCAACAGTGCTGTGGAGTCAAAGACATCACCTGGGCCCCCTGAGCCCAGCAAGC TTTTAGATCAGCACAGCCATCCCTCAGGCAGCATTGCCATAGACAGAGACTCTGAGGTTTACAAGATGCTCCAGGAGAA CCAAGAGTCACACGAGCCACCCAGGCAGTCTGCTTCCTTCCTAGTGCTGCAGGAGATCTTGGAGTCAGAGGAGAAAGGA GATCCCAGCAAACCATCTGGATTTAGGAGCGTCAAGGCTCCCACCACAAAGGTGGCTGCATCGATTGGGAATGCCCAGA AGCTGCCCATGTGTGACAAGTGTGGATCTGGCATTGTANGGGTGTTTGTGAAGATTCGGGACAAGCAGCGTCACCCTGA GTGCTACGTGTGCAGTGACTGCGGCACCAACCTCAAGCAGAAAGGACATTTCTTCGTGGAAGATCAAATCTACTGCGAG AAG

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Pellucida

7-12

stage 8

stage 12

Amnion
Anterior Intestinal Portal
Blood Vessels
Extraembryonic
Heart Tube
Neural Plate/Tube
Yolk Sack or Stalk

13-18

stage 15

stage 17

Amnion
Blood Vessels
Foregut
Heart Tube
Hindbrain
Myotome
Notochord
Pharyngeal Arches and Clefts
Surface Ectoderm
Yolk Sack or Stalk

19-21

stage 19

stage 21

Allantois
Blood Vessels
Face Mesenchyme
Heart
Heart Tube
Midbrain
Pharyngeal Arches and Clefts

Entry 2

GEISHA Id	PDLIM1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGAGCGTCAAGGCTCCCACCACAAAGGTGGCTGCATCGATTGGGAATGCCCAGAAGCTGCCCATGTGTGACAAGTGTGG ATCTGGCATTGTAGGGGTGTTTGTGAAGATTCGGGACAAGCAGCGTCACCCTGAGTGCTACGTGTGCAGTGACTGCGGC ACCAACCTCAAGCAGAAAGGACATTTCTTCGTGGAAGATCAAATCTACTGCGAGAAGCACGCGCGGGAGCGGGTGGTGC CCCCGGAAGGCTACGAGGTGGTCACCGTGTTCCCCAAGTAGCCTGTGCTGCAGTGGGGGCAGCGTGGATGGGTTCTCTT CTGCTGCTCTTGGACAACTTTCCCTTGCCGAATCTCCTTTGCAATAAGGAATGCTAGGCATGGCTTTGAATTTCCTTGC CACATGAATCTTCTGTCTGTTCACACAACGTGTTGCTAATCAGTCAACATTCTTTTTGTCTTTTCTTTCACTGTAGTAT TACTCTTTTTAATACACAGATTATTATTTCTTTTCCCTTCTCCTCTGTGCTGCCAATCGCACAGGAAAGTCAGAGGCCA AAGTCAGATCACAGCTCACCTGTATCCCAGTTGTTGCCTTCAGCTCACGTTCAATA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.