GEISHA - A Chicken Embryo Gene Expression Database
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PDLIM4
PDZ and LIM domain 4

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolPDLIM4
Official Full NamePDZ and LIM domain 4
CGNC ID5048
also known asRIL, PDZ and LIM domain protein 4|LIM protein RIL|reversion-induced LIM protein, PDZ and LIM domain protein 4, LIM protein RIL, Reversion-induced LIM protein
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204839
PolypeptideNP_990170
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.7467
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human8572ENSG00000131435MIM:166710MIM:603422
Mouse30794ENSMUSG00000020388All phenotypic alleles (3):Targeted, other(3) MGI:1353470
Xenopus394862, 4469691001789
Zebrafish569404ENSDARG00000068973ZDB-GENE-070308-5ZFIN:ZDB-GENE-070308-5
Gene Ontology
Molecular Functionzinc ion binding
Biological Process
Cellular Component
Links to other databases
Entrez Gene395643
Ensembl Gene
KEGGgga:395643

Entry 1

GEISHA Idpgn1c.pk018.f9Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
AGCGGAGCGCAGCGCTGGGCACGGAGCCCCAACCCCGCTATGCCGCACTCGGTGGCCCTGCGCGGCCCCTCGCCGTGGG
GTTTCCGCCTGGTGGGCGGTAAGGACTTCAGCACGCCGCTGACCATCTCCAGGATTAACCCTGGAAGTAAAGCAGCCCT
GGCCAACCTGTGCCCAGGAGACATCATTCTGGCCATTA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
stage 6
Hensen's Node
Neural Plate/Tube
node asymmetry
7-12
stage 8
stage 9
stage 10
stage 12
Anterior Intestinal Portal
Ear/Otic Placcode
Head Mesenchyme
Neural Plate/Tube
Notochord
Primitive Streak
Somites
 
13-18
stage 14
stage 16
stage 17
stage 17
stage 17
stage 17
stage 18
stage 18
Diencephalon
Ear/Otic Placcode
Eye
Foregut
Lens
Myotome
Nasal Placcode/Nerve
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Retina
Sclerotome
Somites
Splanchnic Mesoderm
Stomach
Tail
hand transected
19-23
stage 20
stage 20
stage 21
stage 21
stage 21
stage 21
stage 22
stage 22
stage 22
stage 22
stage 23
stage 23
Allantois
Dermomyotome
Diencephalon
Ear/Otic Placcode
Eye
Forebrain
Hindbrain
Lens
Limb Buds
Midbrain
Myotome
Nasal Placcode/Nerve
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Sclerotome
Somites
Spinal Cord
Splanchnic Mesoderm
Tail
Wing
Wing Mesenchyme
xs

Entry 2

GEISHA IdPDLIM4.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GCGGCTCGAGGCGCTGGGCACGGAGCCCCAACCCCGCTATGCCGCACTCGGTGGCCCTGCGCGGCCCTCGCCGTGGGGT
TTCCGCCTGGTGGGCGGTAAGTGACTTCAGCACGCCGCTGACCATCTCCAGGATTAACCCTGGAAGTAAAGCAGCCCTG
GCCAACCTGTGCCCAGGAGACATCATTCTTGCCATTAATGGGGAGAGCACAGAAGCCATGACGCACCTGGAGGCTCAGA
ACAAGATCAAGGCGTGTGTGGAGCAGCTGCTGCTGTCTGTGAGCAGAGCTGAGGAGAGGAGCTGGTCACCACCCATACT
GGAGGATGGGAAGGCACAAGCTTACCGCATCAATATTGAGCCTGAGCCGCAGGATAACGGCCCTGCAGTGGGCAAGAGG
CCCATGCCCCACGCTGCAGGTGGGAGCCCAGTGGACAGCAGGCCGGCACTGAGCCTGCAGCACCCCCAGCCCAGCCGGC
CGCATGCCAGCAGCAGCGCCGATGCCGCCTTGCCGCTGCAGCTCAGTGGGCTGCACATCTCTCCCTCCCAAAGCACCGA
CCCCTTAAAGTCCCTCCCACGGAACAGAAACGGGATCGATGTGGAGTCAGATGTCTACAAGATGCTCCAGGATTACGAG
AGGCCTGCCTCAGAGCCCAAGCAGTCGGGGTCCTTCCGCTACCTGCAGGGCAATGCTGGAGGCTGGGGAGAACGGGTGA
AAAACTCGACAGACTGAGCAACCCTCGGAGCATCAAACCTGCAGGACCGAAGCTGGGCGCTGCCATGTCCGGCCTGCAG
ATGCTCCCCGAGTGCACGAGATGTGGCCATGGGATCGAGGGAACATCGTCAAAGCCCGAGACAA
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Ubiquitous
ubiquitous
4-6
stage 4
stage 5
Epiblast
Germinal Crescent
Hensen's Node
Neural Plate/Tube
Primitive Streak
germ wall margin (deep cells of marginal zone) / primitive streak / epiblast around anterior primitive streak
neural plate border / neural plate / Hensen's node (left side)
7-8
stage 8
Neural Plate/Tube
Notochord
neural plate border / posterior notochord
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.7467

Mouse

EmageMGI:1353470
EurexpressMGI:1353470
MGI GXDMGI:1353470

Frog

Xenbase1001789

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-070308-5
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