GEISHA - A Chicken Embryo Gene Expression Database
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JADE3
jade family PHD finger 3

Gene
Official SymbolJADE3
Official Full Namejade family PHD finger 3
CGNC ID12542
also known asPHF16, protein Jade-3|PHD finger protein 16
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_416870
PolypeptideXP_416870
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.18002
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human9767ENSG00000102221MIM:300618
Mouse382207ENSMUSG00000037315All phenotypic alleles (2):Targeted, other(2) MGI:2148019
Xenopus779948978172
Zebrafish322209ENSDARG00000019614ZDB-GENE-030131-928ZFIN:ZDB-GENE-030131-928
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene418674
Ensembl Gene
KEGGgga:418674

Entry 1

GEISHA IdJADE3.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-TCACGGATGCGTCAGGATG-3’
Reverse cDNA Template Primer5’-AATTAACCCTCACTAAAGGTTTCGGACACAGGAGGCAC-3’cDNA Template Length802
Complete cDNA Template Probeshow
TCACGGATGCGTCAGGATGAAACGCCACAGGCATCTGAGCACCAGTGACAGTTCAGACAATGAGAGTCCTTCCACTTCC
TTTTCTTCTTGTGCTAAATACAGGAGCAAGTCAAAAACACCAGCAAATGAACAAAAGAAACCTGCTGAGGTGTTCCGCA
AGGATCTCATTAGTGCCATGAAACTACCGGATTCTCACCATGTTAACCCCGATGAATATTATGTCTTTGCGGACACGTG
GAAACAGGAATGGGAGAAAGGAGTCCAAGTTCCAGCCAGTCCAGAAACGATTCCGCAGCCATCTCTCAGGGTTGTCGCA
GAAAAGGTGAAAGAAGTACTGTATACACGACCCAGGAAATATATCCACTGTTCCAGCCAAGAGCCTACAGAACCAGGTT
ACATCAACATTTTGGAATTGGCAGAATCTGTGTGTCGCTATGACTTGGATGATATGGACATATTTTGGCTCCAGGAACT
AAATGAAGAGCTTACTGAAATGGGATGCGGGCCCCTGGATGAAAACACAATGGAAAAAACTATTGAAGTGCTGGAGCGA
CACTGTCATGAGAATATGAATCATGCTATTGAGACCGAAGAAGGTCTGGGTATAGAGTATGATGAAGATGTCATCTGTG
ATGTGTGCCGGTCTCCTGACAGTGAAGATGGGAACGATATGGTGTTCTGTGACAAGTGTAATATCTGTGTCCATCAGGC
ATGCTATGGAATCTTGAAAGTCCCCGAAGGGAGCTGGCTGTGCCGCACCTGTGTTCTGGGGATACATCCTCAGTGCCTC
CTGTGTCCGAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Unlabeled
 
13-18
stage 18
Foregut
Head Mesenchyme
Leg Mesenchyme
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
Ventricles
Wing Mesenchyme
 
19-24
stage 19
stage 23
Head Mesenchyme
Leg Mesenchyme
Lung
Mesonephros
Pharyngeal Arches and Clefts
Widespread Expression
Wing Mesenchyme
 
25
stage 25
stage 25
Head Mesenchyme
Leg Mesenchyme
Lung
Mesonephros
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme
 

Entry 2

GEISHA IdPHF16.Brugmann.2010Data SourcePublication
Complete cDNA Template Probeshow
ATGCCGCCCATCGCGCCCGTTTCTGTCGAACGCCGTTCCGGCGGGGAGCTCCGCCGCGGGTCGGACGGCGACCGTCACC
AGCCGGCTGAGCGCTGCGCTAAGGTGTTCCGCAAGGATCTCATTAGTGCCATGAAACTACCGGATTCTCACCATGTTAA
CCCCGATGAATATTATGTCTTTGCGGACACGTGGAAACAGGAATGGGAGAAAGGAGTCCAAGTTCCAGCCAGTCCAGAA
ACGATTCCGCAGCCATCTCTCAGGGTTGTCGCAGAAAAGGTGAAAGAAGTACTGTATACACGACCCAGGAAATATATCC
ACTGTTCCAGCCAAGAGCCTACAGAACCAGGTTACATCAACATTTTGGAATTGGCAGAATCTGTGTGTCGCTATGACTT
GGATGATATGGACATATTTTGGCTCCAGGAACTAAATGAAGAGCTTACTGAAATGGGATGCGGGCCCCTGGATGAAAAC
ACAATGGAAAAAACTATTGAAGTGCTGGAGAGACACTGTCATGAGAATATGAATCATGCTATTGAGACCGAAGAAGGTC
TGGGTATAGAGTATGATGAAGATGTCATCTGTGATGTGTGCCGGTCTCCTGACAGTGAAGATGGGAACGATATGGTGTT
CTGTGACAAGTGTAATATCTGCGTCCATCAGGCATGCTATGGAATCTTGAAAGTCCCCGAAGGGAGCTGGCTGTGCCGC
ACCTGTGTTCTGGGGATACATCCTCAGTGCCTCCTGTGTCCGAAACGAGGAGGTGCCATGAAAGCCACCAGGACAGGGA
CCAAGTGGGCACATGTGAGCTGTGCTCTCTGGATTCCAGAGGTTAGTATTGCTTGCCCAGAAAGGATGGAGCCGATCAC
GAAGGTTTCTCACATTCCACCAAGTCGATGGGCTTTAGTGTGTAGTTTATGCAAACTGAAAACCGGTGCTTGCATTCAG
TGTTCGGTGAAAAGCTGCATCACTGCCTTTCACGTCACCTGTGCCTTTGAGCATAGCTTAGAGATGAAGACTATCCTGG
ATGATGGGGATGAGGTCAAATTCAAGTCATACTGTCTAAAGCACAGCAAGAACAAACAGAATTCCCTGCCTGATGTTGA
TGAACACCCCAAAAGCATATCAGATCAGAAGCAAACTGAGAGTGAGAAAACCAGTTTGCGAGCCCAGAAACTCCGAGAG
CTGGAAGAAGAGTTTTACTCACTGGTTAAAGTGGAGGATGTTGCAGCAGAACTGGGCCTCCCTAAACTTGCTGTAGACT
TCATCTACAATTACTGGAAACTAAAGCGGAAAAGTAATTTTAACAAACCTTTGTTTCCTCCCAAGGAGGATGAAGAAAA
TGGCTTGGTGCAGCCAAAAGAAGATAGCATTCATACTCGCATGAGGATGTTCATGCATTTGAGGCAGGACCTAGAGAGG
GTAAGGAATCTCTGCTACATGGTAAGCAGGAGAGAGAAACTGAAGCTGTCTCACAGTAAAGTACATGAACAGGTCTTCA
ATTTGCAAGTTCAGCTCATTAATCAGGAAATTGCTGCAGGCCATACCCTGCCAAGTGCACTAGAGAACACACTGTTCTA
CCCACCTCCCAGGATCACCCTGAAGTTAAAAATGCCCAAATCAGCACTAGGAGATTGCAAAAATAACTCACTGAAGCCT
GGCAACAGACCGCTCTCTCCTGACAACAACAGCACTGTTTACAGCAAAAGGAGCGTGCCGATGTCAAAGGAGCCATTTG
AAATCAAAGCCAAATCTTACTCCAGGTATCAACACGACACCAGAAGTAATGGGTTGCTTGTGACAGGAGGGATCGGCAA
GCCTCGTGGCGAGGCAAAGGACTCCGGTCTTGTGCAGGTGCCGGAGTTCCACCGGGGCCAGCCATCAGGGAAGCCCCTG
GCACTGCAGGCTGCTCTGCACGGACAGTCCTCCATTGGGAATGGGCGGCTGCAGCAGGATGGCTCACGGCTGGTGGCCA
AGTCCAATGGGCTGATGGGCAGGACTGGTGATGTGAGCCAGAGGGACAGCTCCAGCCAGACGCCCTTTGAACAGGAGTC
TGTGCTGACGGCTCATTTGGCCAGCCAGAGTGGTTTTAGAAAATCCACCATTGAGCACTTCAGCCGGTCCTTTAAGGAG
GCCACCAACAGTCTGGTGAGGACAACGGAAGATTTGAGGTGCTGTGAGAAGCCAACGAGAAGGCTTGCAGCAAAAGAAC
GCTTGTGGAGCAAGCAGACGCTTGAAGGGGCTCCGTACCAGGACAATGACGGGTACTGTCCCGACTTGGAGCTGAGTGA
CTCTGAAGCAGAAAGTGATGAAAATAAAGAGCAAATGAGGTTAAGACGAAGTAGCTCGGAGAGAGAAAGTCCGAGTAAG
GACTTTGGAAGAGAGTGTCACAATAGAAACAAAAAGAATATGATTTCTCACGGTTCGGTACAAAGGTGA
CitationS.A. Brugmann, K.E. Powder, N.M. Young, L.H. Goodnough, S.M. Hahn, A.W. James, J.A. Helms, M. Lovett. Comparative gene expression analysis of avian embryonic facial structures reveals new candidates for human craniofacial disorders. Hum Mol Genet. 2010 March 1; 19(5): 920–930.
CopyrightCopyright © The Author 2009. Published by Oxford University Press. All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
stage 25
Nasal Placode/Nerve
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.18002

Mouse

EmageMGI:2148019
EurexpressMGI:2148019
MGI GXDMGI:2148019

Frog

Xenbase978172

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-928
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