GEISHA - A Chicken Embryo Gene Expression Database
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PHTF1
putative homeodomain transcription factor 1

Gene
Official SymbolPHTF1
Official Full Nameputative homeodomain transcription factor 1
CGNC ID1300
also known asputative homeodomain transcription factor 1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_418005
PolypeptideXP_418005
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.54238
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human10745ENSG00000116793MIM:604950
Mouse18685ENSMUSG00000058388All phenotypic alleles (2):Targeted, other(2) MGI:1332671
Xenopus100144741853449
Zebrafish564764ENSDARG00000057708ZDB-GENE-080204-123ZFIN:ZDB-GENE-080204-123
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene419878
Ensembl GeneENSGALG00000001845
KEGGgga:419878
GEISHA IdPHTF1.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GGGGTGGGCTGAGCCGGGCTGAGGGCGGCCGGAGCCGCATGGCTGCCCGCGAGCGGGACGCGATCTCCTGGTACCAGAA
GAAGGTCGGGGCCTACGATCAGCAGATATGGGAGAAGGCGATCGAGCAGACGGAGATGAAGGGCTTCAAGAGCAAGCCG
AAAAGGAAGGGCCACATCCAGGCCGACCTGATCGACGTGGATCTGATCCGAGGTTCTACGTTTGCCAAAGCTAAGCCTG
AGATCCCCTGGACGTCGTTAACTCGGAAGGGAATCGTGAGGGTTGTGTTCTTCCCGCTGTTCAGTCAGTGGTGGATCCA
GGTGACGTCCCAGCGCATTTTCACGTGGCTCCTGGTGCTCTACGTTATGCAGGTCATAGCAGTTGTGTTGTATTTCGTG
ATGCCTGTTGTGAACGCAAGTGAAGTCATGGGACCGATGTGCCTTATGTTACTGATGGGAACTGTTCACTGCCAAATAG
TGTCCACCCAGATGAACAAAACATCAGGAAACAACGGCCTCAGCAGGAGGAGGAGGAAATTACGCAGATCTGTGGGTGT
TGATGGGAACAGTTGGTCTCCTCCTGACAGAGCCAGCACAGAACAGCAGGCGGAATCCGCATCCGCGCTCACCACTTTA
TTTGGCATTCTCTTCCGGAGGAGGGTCAGAAACACAACGTTGGTGGCTGAGAAAGGAACTGAGACAGAACACGGTGTGA
GTGCTGTGAATAATGTCATTAAGCACAGACATGGCAGGTCCGAGCACAGGCTGCTGCACTTCAAAGAGAAAAATAAACT
TTCCAATGTGGAGAAGAGCCATCAGGATGACTGCACCAACAGAGATGGTGTATCTGACGAGCTTTCAAGCGAGGAGGAT
GCTGAAGCAGTGGCAGAAAGGCTCTTGTTACGGCAGCATGTAGAAGGGGCTTCCAGTGACAACAGCTATGAAGAGAAGA
AAAAGCAGCGCCCTGTCTCTCTGAACCAGGCTGTCTCACAGGTCAGGCAAGCACTCAGAGGTGTCAGAGATTCTGACAG
CGTCGCGGAATCTGAACTCGAATCCACATTATATAATCAGGACTCGAGGTCATGCATGAATGTGGGGTCCCGGAGCTGT
AGTGTGACCCGGAGAGACTCCGAGAGCACACGGCATGACTCGGAGACAGAAGACATGCTTTGGGATGATCTGCTGCATG
GGCCGGAGTGCCGCTCGTCCTGCACCAGCGACAGCGAGGAGGAGACCATGAAAGGCAGCAGGAGGGACCTGAAGGAAGA
CGTTTTTCAGCAGAACCATTTGCTGTGGCTACAGAATACAAGTCCAGAATCTGCAAAAGTGAGCGCACTGATCTGGGAA
GGGAATGACTGTAAGAAGGTGGACATGTCTGTGCTGGAGATCAGTGGGATCATCATGAGCAGGGTTAATGCCTACCAGC
AGGGAGTGGGGTATCAGATGTTGGGAAACGTCATCACCATCGGATTAGCGTTCCTACCATTCCTCTACAGACTCTTTCA
CACTGATAACATGGAGCAGTTGTGCTCCATTTCTCTGAAGGAGCTTTTGCACATCTTCTGTGGAGCACCTGCTAGCATC
CCTGTCATTGTTTTGTCTACAATCAACTTCCTTGAACGGCTTTGCTTGACCTGGATGTTTTTCTTTATGATGTGTGTTG
CTGAGAGAACATACAAACAGAGGTTTTTGTTTGCCAAGCTTTTCAGTCACATCACATCGGCTCGGAAAGCCAGGAAATA
CGAAATTCCTCACTTCAGACTCAAGAAGGTAGAAAACATTAAGATCTGGTTATCTCTTCGTTCCTATCTAAAGAGGCGA
GGCCCGCAGCGCTCCGTGGATGTTGTTGTGTCATCCATCTTCTTACTGGCTCTTTCAATTGCTTTCATATGCTGTGCCC
AGGTCCTGAAGGGTCACAAAACATTTCTGAACGCAGCTTACAACTGGGAGTTCTTAATCTGGGAGGCAGCACTTCTTCT
CTTTTTACTGCGCCTCGCATCCTTGGGCTCTGAAACCAACAAGAAATACAGCAATATTTCCATCTTGCTTACTGAGCAG
ATAAACTTATACCTAAAGATGGAGAAGAAACCAAACAAGAAAGAACAGCTGTCTCTAGTTAACAATGTTTTGAAACTGT
CTACAAAGCTGCTGAAGGAATTGGACACACCATTCAGGCTGTACGGGCTGACCATGAACCCATTAATCTACAACATAAC
ACGTGTTGTAATACTCTCTGCTGTCTCGGGTGTTATAAGTGATCTGCTGGGATTCAATATCAGATTATGGAAAATTAAA
CCATGAACTGACTGACCATCAGCACAGCCCTCTCCAGCAGAAGGACAGAGCACAGACCGAGGGCTTGGACACAAAGCAG
GGCTGCTCTCACACGACAGAGGTCTGTCACTGCAGTTTCTTTAACAGAGCCTCAAGGTATGCACTGAAAGTTGTCCCTC
TGCTTTACTGTTCCATAACATATAGACTAAACTGGTCCAATTTATGAAGTCATCCTATGGCATGCACATGTGAAACAGA
ATAAATTGAGCCAAATACTGGTACTAGTTCGCACTGAAGATAGCAGGAACTGCATGCACAGACTGTGGAGCATCACTTG
CTACAAAAGCCATGCTAGAGCTTGTACTGGAACGACACAGGTGGTTGCTACAGGTGCTTTGTTTCTCTAAAAATCGGTC
CTGTGCAATAACCTAACAAATCAGTCCTGGTGGTGTTCGCCTCATTTTCAGAGAGCACCGGAGCTACGCTGGGCTGTGT
GTGTCTGCCTTCACAGCACTGCTCAGATGGTACTGATGAGGCGTTAATGTGAATGTGCTGAAGAGCACTTTTCTCAGCA
TTTCATTGTGCTTTTGGCTGCTGCTGCGGGATGCAGTGACAGCAACCTGCACAGGATGAACACTGACCCAATGCTGACA
GTTAAAGTTACGTTTGAACCACCTTACAATACAAACAGGTAAAACATCTGTCAGCTAAAAGAAATTACTTTGCTATGGT
TGTTCTCTCTGACAGCTCAGTGTTTAATCAGTGGGCAGGTAATAGCGTGCCATGTACAGGGCATCCTGCTGTAAGTTCT
TCCCATGACAGCTGAATTTGGTGTTCCAAGAAGCTGCTGCAGCTCTGCACTGCAATAGTGCCTTACACTGGAATACTTA
AGGAAGAGTTCCTGGTGTGGTCATCGCGTCAGTGGAAGATGATTGGAGAAAGACTTCCTCACTTAAAAGTAGATCCATG
TTTAGAAATGGCATAGGAAAGAAAGAGAAGTTGTAAAGACATCTGCTAAACTTGCATTTTCCTTACGTTTTGCTGACTG
TTACATCAGTAATGAAGAAAAGCAAAATCCAACCTCCTCCTGGCTTCATTCTGTCATGTAAGGAAGCAAGATGGCATAA
GAATTTTTGGTAGTAAACTGTTTATAGCTATTTTCTGTACAAGGAAAGGTTGAAAGATGGAAAAGAAAATGACAACTTT
ATATATCAAAATGTACAAATAAACCTACAGTACAAGTATTTCTTCATCAACAGCTGTTTCTACATGACTTCATGACTGT
ATCACCTTTGTTGAACATTTGTTATCTGAGCAGGAAGTCAAGGAAACTTTCAATAATAAACTGCATTTGTTTTCCAGAA
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_418005 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XII
Area Pellucida
 
1-3
stage 3
Epiblast
almost all epiblast except in germinal crescent area
4-6
stage 6
Hensen's Node
Mesoderm
Neural Plate/Tube
Primitive Streak
neural plate / primitive streak / Hensen's node / weaker in mesoderm
7-8
stage 8
Neural Plate/Tube
neural plate
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.54238

Mouse

EmageMGI:1332671
EurexpressMGI:1332671
MGI GXDMGI:1332671

Frog

Xenbase853449

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-080204-123
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