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A chicken embryo gene expression database

	Anatomical Location
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	Gene Name
	GEISHA ID
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PITX2
paired like homeodomain 2

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	PITX2
Official Full Name	paired like homeodomain 2
CGNC ID	49517
also known as	Ptx2, pituitary homeobox 2\|cPITX2\|homeobox protein PITX2\|paired-like homeodomain transcription factor 2\|transcription factor Pitx2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205010
Polypeptide	NP_990341

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	43664			FBgn0020912
Human	5308	ENSG00000164093	MIM:180500	MIM:601542
Mouse	18741	ENSMUSG00000028023	All phenotypic alleles (16):Targeted, knock-out(4) Targeted, other(12)	MGI:109340
Xenopus	549981, 398033, 373586			482491
Zebrafish	30164	ENSDARG00000036194	ZDB-GENE-990714-27	ZFIN:ZDB-GENE-990714-27

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	determination of left/right symmetry, embryonic limb morphogenesis, more...
Cellular Component	nucleus

Links to other databases

Entrez Gene	395862
Ensembl Gene
KEGG	gga:395862

Entry 1

GEISHA Id	O21	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGAAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGAC GCACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAG GAGATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGA GAGAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGA CATGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCC TTCTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCA TGTCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCT GAGCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGG GACACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGA ACCCCGCGTCCAACCTGAGCGCCTGCCAGTACGCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCGCTGCCACGGA CTGAGCTGCGCTGGAGNAGCGGTGGGCACCCTGGAAGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAAGGAGAG AAGGGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCT AAGAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGA CATTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATA TATCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAA ATAAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTA TGTTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAG ATGTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGAC ACGAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCTTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAA

Stage

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4-6

stage 4

Area Opaca

7-12

stage 7

stage 8

stage 11

stage 12

Anterior Intestinal Portal
Area Opaca
Endoderm
Endoderm, early
Extraembryonic
Face Mesenchyme
Lateral Plate Mesoderm
Mesoderm
Mesoderm, early
Splanchnic Mesoderm
Surface Ectoderm
Trunk Mesenchyme

asymmetrical
caudal asymmetry

13-18

stage 13

stage 15

stage 16

Endoderm
Extraembryonic
Face Mesenchyme
Splanchnic Mesoderm
Surface Ectoderm

asymmetric caudally
caudal asymmetry

19-23

stage 20

stage 23

Extraembryonic
Eye
Face Mesenchyme
Lateral Plate Mesoderm
Leg Bones
Leg Mesenchyme
Limb Buds
Myocardium
Outflow Tract
Spinal Ganglia and Nerves
Splanchnic Mesoderm
Surface Ectoderm
Wing Bones
Wing Mesenchyme
Yolk Sack or Stalk

Entry 2

GEISHA Id	ChEST76c15	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCCGGCGTCCTCTCGCCGATGAGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGT GCTCCTCCTCACCTTCCTCCTCCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCT GGCGCCGGGGCAGGCTCGCTCCTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGC CCCGAGGCCGCAGAGAAAGAGAAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGC GGCAGCGGCGGCAGCGGACGCACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCC CGACATGTCCACCCGCGAGGAGATCACCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGC AGAGCCAAATGGAGGAAGAGAGAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCC TGATGCAGCCCTACGATGACATGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCT CTCCACCAAGAGCTTCCCCTTCTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCACAACCCAACCCCGCTGC CACGGACTGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGG AGAGAAGGGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATC

Stage

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1-3

stage 3

Germinal Crescent
Hensen's Node

4-6

stage 4

stage 6

Area Opaca

7-12

stage 8

stage 10

stage 12

Area Opaca
Extraembryonic
Head Mesenchyme
Heart Tube
Lateral Plate Mesoderm
Splanchnic Mesoderm

asymmetrical

13-18

stage 14

Extraembryonic
Pharyngeal Arches and Clefts
Surface Ectoderm

face

19-24

stage 20

stage 21

stage 23

Allantois
Amnion
Atria
Extraembryonic
Eye
Oral Pharynx
Pharyngeal Arches and Clefts
Surface Ectoderm
Yolk Sack or Stalk

stage 25

Atria
Dermatome
Eye
Leg Mesenchyme
Myotome
Pharyngeal Arches and Clefts
Somatopleure
Surface Ectoderm
Wing Mesenchyme

Entry 3

GEISHA Id	Pitx2.Noden.2006	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	Noden DM, Francis-West P. The differentiation and morphogenesis of craniofacial muscles. Dev Dyn. 2006 May;235(5):1194-218. Review.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205010).

Stage

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13-16

stage 16

Eye
Neural Crest

Extraoccular Muscles

Entry 4

GEISHA Id	Pitx2.Bothe.2006	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCA
Citation	Bothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60.
Copyright	Copyright © 2006 Wiley-Liss, Inc.

Stage

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7-10

stage 10

Endoderm
Head Mesenchyme
Mesoderm

Entry 5

GEISHA Id	PITX2.Bothe.2007	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	Bothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205010).

Stage

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7-10

stage 10

Head Mesenchyme

Entry 6

GEISHA Id	Pitx2.Garcia-Castro.2000	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	García-Castro MI, Vielmetter E, Bronner-Fraser M. N-Cadherin, a cell adhesion molecule involved in establishment of embryonic left-right asymmetry. Science. 2000 May 12;288(5468):1047-51.
Copyright	Copyright © 2000, The American Association for the Advancement of Science
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc NM_205010.1).

Stage

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1-3

stage 3

Lateral Plate Mesoderm
Mesoderm

Entry 7

GEISHA Id	Pitx2.Lopez-Sanchez.2009	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	Lopez-Sanchez C, Garcia-Masa N, Gañan CM, Garcia-Martinez V. Movement and commitment of primitive streak precardiac cells during cardiogenesis. Int J Dev Biol. 2009;53(8-10):1445-55.
Copyright	Reprinted from Int. J. Dev. Biol. Copyright (2009), with permission from UBC Press. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Complete cDNA template sequence obtained from ncbi (accession #NM_205010 ).

Stage

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Location (click to highlight)

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7-8

stage 7

stage 8

Anterior/Second Heart Field
Lateral Plate Mesoderm
Splanchnic Mesoderm

(C,D) shows the cells from site C2 forming the
(C1.5) at the same time contributed to forming bilateral mesoder-
In stages PS11-14 (Fig. 2), most cells located
asymmetrical
at the rostral site (C0.5) contributed in the anterior half of the
embryo to forming the more anterior and lateral endodermal area,
in a crescent-shaped pattern; while cells from a more caudal site
mal areas, reaching the border with the area pellucida, and
ment (red), and cells from site C1 forming
overlapping with the caudal limits of the aforementioned crescent.
splanchnic mesoderm of the heart rudi-
the underlying endoderm (blue).

Entry 8

GEISHA Id	PITX2.Parkinson.2010	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	Parkinson N, Collins MM, Dufresne L, Ryan AK. Expression patterns of hormones, signaling molecules, and transcription factors during adenohypophysis development in the chick embryo. Dev Dyn. 2010 Apr;239(4):1197-210.
Copyright	Copyright © 2010 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # AF076640.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 21

Pituitary (Rudiment)

25-30

stage 28

Pituitary (Rudiment)

31-36

stage 32

stage 36

Pituitary (Rudiment)

Entry 9

GEISHA Id	PITX2.Bothe.2011	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	Bothe I, Tenin G, Oseni A, Dietrich S., Dynamic control of head mesoderm patterning., Development. 2011 Jul;138(13):2807-21.
Copyright	Permission from the authors and the Company of Biologists Ltd. Copyright held by the authors.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205010.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Head Mesenchyme

7-10

stage 10

Head Mesenchyme
Lateral Plate Mesoderm

Entry 10

GEISHA Id	PITX2.Schlueter.2009	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	Jan Schlueter, Thomas Brand. A right-sided pathway involving FGF8/Snai1 controls asymmetric development of the proepicardium in the chick embryo. Proc Natl Acad Sci U S A. 2009 May 5; 106(18): 74857490.
Copyright	Copyright 2009 National Academy of Sciences
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205010.1 ).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Atria
Sinus Venosus

13-15

stage 15

Atria
Sinus Venosus

Entry 11

GEISHA Id	PITX2.WangS.2004	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	Wang S, Yu X, Zhang T, Zhang X, Zhang Z, Chen Y. Chick Pcl2 regulates the left-right asymmetry by repressing Shh expression in Hensen's node. Development. 2004 Sep;131(17):4381-91. Epub 2004 Aug 4.
Copyright	copyright 2004 to the authors. Published by the Company of Biologists Ltd.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205010.1 ).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Lateral Plate Mesoderm

7-11

stage 11

Lateral Plate Mesoderm

Entry 12

GEISHA Id	PITX2.Schneider.1999	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (Acc. # NM_205010.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Splanchnic Mesoderm

double-color in situ: Pitx2(red staining) and NKX3.2(blue staining)

Entry 13

GEISHA Id	Pitx2c.Yu.2001	Data Source	Publication
Complete cDNA Template Probe	show `GTCCTCTCGCCGATGAGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCT CCTCACCTTCCTCCTCCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCC GGGGCAGGCTCGCTCCTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAG GCCGCAGAGAAAGAGAAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGC GGCGGCAGCGGACGCACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACAT GTCCACCCGCGAGGAGATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCC AAATGGAGGAAGAGAGAG`
Citation	Yu X, St Amand TR, Wang S, Li G, Zhang Y, Hu YP, Nguyen L, Qiu MS, Chen YP. Differential expression and functional analysis of Pitx2 isoforms in regulation of heart looping in the chick. Development. 2001 Mar;128(6):1005-13
Copyright	© 2001 by Company of Biologists
Comments	The complete cDNA template sequence was obtained from the information in the publication as described in Yu et al. 2001.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Hypoblast

7-12

stage 8

stage 11

Head Mesenchyme
Heart Tube
Lateral Plate Mesoderm

13-18

stage 13

stage 15

Unlabeled

31-44

stage 44

Entry 14

GEISHA Id	Pitx2.Yu.2001	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	Yu X, St Amand TR, Wang S, Li G, Zhang Y, Hu YP, Nguyen L, Qiu MS, Chen YP. Differential expression and functional analysis of Pitx2 isoforms in regulation of heart looping in the chick. Development. 2001 Mar;128(6):1005-13
Copyright	© 2001 by Company of Biologists
Comments	The complete cDNA template sequence was obtained from the information in the publication as described in Yu et al. 2001.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 13

stage 15

Blood Islands
Endothelial Cells

31-44

stage 44

Entry 15

GEISHA Id	PITX2.Lee.2020	Data Source	Publication
Complete cDNA Template Probe	show GCACGAGCGGGCACACGCGCTCCTTCTCCCGTCAGCCCCTCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATG AGTTGCATGAAGGACCCGTTAAGCCTGGAGCGCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCT CCTCCTCCTCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTC CTCCCTGGAGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAG AAGAGCCAGCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGC ACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGA GATCGCCGTCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGA GAGAGGAACCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACA TGTACCCCGGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTT CTTCAACTCCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATG TCCTCCAGCATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGA GCAACCCCTCCCTCAACTCGGCAGTGCCCACGCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGA CACGTGTAACTCGAGCTTGGCCAGCCTGAGACTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAAC CCCGCGTCCAACCTGAGCGCCTGCCAGTACCCCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCCGTTGCCACGGAC TGAGCTGCGCTGGAGAGCGGTGGGCACCGTGGAGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAG GGAGTAAAGGAAACCACTGAAACGAGATAGTTCCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAG GAGTATTTCAGCAGTTACGAGGACATATATATATATATATATATATACGGACAAATGGTTGACTGGATATGATATGACA TTTTAATGTTCCTATAAGCTTGTTATTTTTTAAGTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATA TCGAAATGTCAAATTAATTTTATAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAAT AAAGCATGTTACACAGAAGCGATTAGGAGTTTTTCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATG TTTCTAACATATAATTATTAAAAACAAAACATTGTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGAT GTTTCTGATATTGCAATGTAAAACATGCCCTGTGTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACAC GAAAAATAATGTGTTTTATTTCATGGGAGTAAAAGATGCAGCATTCAAAAAAAAAAAGAAAAAA
Citation	Hyung Chul Lee, Hui-Chun Lu, Mark Turmaine, Nidia M. M. Oliveira, Youwen Yang† , Irene De Almeida and Claudio D. Stern. Molecular anatomy of the pre-primitive streak chick embryo Open Biol. null. 10.1098/rsob.190299.
Copyright	Copyright © 2020 The Authors.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205010.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

X-XIV

stage X

stage XII

stage XIV

Area Opaca
Area Pellucida
Epiblast
Hypoblast
Kohler's Sickle

Stage EGK X-XI
Stage EGK XII-XIII
Stage EGK XIII-XIV

all

Entry 16

GEISHA Id	PITX2.Sjödal.2008	Data Source	Publication
Complete cDNA Template Probe	show TCGTCCTCCTGCCATCACCAGCAGCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTCCTCCCTGG AGGCCGCCAAGCACCGGCTGGAGGTGCACACTATCTCTGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAGAAGAGCCA GCAGGGCAAGAGCGAGGATGCGGGGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGCACTTCACC AGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGAGATCGCCG TCTGGACCAACCTCACCGAGGCCCGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGAGAGAGGAA CCAGCAGGCCGAGCTGTGCAAGAACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGATGACATGTACCCC GGGTACTCGTACAACAACTGGGCAGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTTCTTCAACT CCATGAATGTCAACCCGCTGTCCTCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATGTCCTCCAG CATGGTGCCCTCGGCGGTCACCGGCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGAGCAACCCC TCCCTCAACT
Citation	Sjödal M, Gunhaga L. Expression patterns of Shh, Ptc2, Raldh3, Pitx2, Isl1, Lim3 and Pax6 in the developing chick hypophyseal placode and Rathke’s pouch. Gene Expr Patterns. 2008 Sep;8(7-8):481-5. Epub 2008 Jul 4.. DOI: 10.1016/j.gep.2008.06.007.
Copyright	Copyright © 2008 Elsevier B.V.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Sjödal et al. 2008.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

Ectoderm
Head Mesenchyme

hyp = prospective hypophyseal placode

13-18

stage 13

stage 17

Ectoderm
Head Mesenchyme

Rathke's pouch
Rathke's pouch

19-24

stage 20

stage 24

Ectoderm
Head Mesenchyme

Rathke's pouch

all

Entry 17

GEISHA Id	PITX2.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GAGCTGATGCGGTGCGGGGCTGGCCGCGGCGCGGCGCGGGTCCATGCGCGGGCGGCGGAGAGGAGCGCCCCGCGGAGCG CCGCCGAGCCCCGCGGCGGGCCGGGGGCCGCCGGCCGGGGAGCTGCGGGGTGGCCGTGACGGCTCTTGCGGGTCCGGAG CCGCTCGCTCGCCTGCCAACACCGCGCCCCCCCGGGCGGCGGGGGCTCCGGGGCGCGCCCGCCCGCCCAGCCGCTAGCC GAGCCCCGGGAGGCCGCCCAGGGAGGGGGCGCCGCGACGGTCCGGGCCGCCCCCCCGGGCACACGCGCTCCTTCTCCCG TCAGCCCCCCCGGGCGCGCCCGTCGGCTCCGGCGTCCTCTCGCCGATGAGTTGCATGAAGGACCCGTTAAGCCTGGAGC GCCTGGGAGCCGGGAATAATAAGCTGTGCTCCTCCTCACCTTCCTCCTCCTCCTCCTCGTCCTCCTGCCATCACCAGCA GCCCGCGCTGGCCATGGCGACGGCGCTGGCGCCGGGGCAGGCTCGCTCCTCCCTGGAGGCCGCCAAGCACCGGCTGGAG GTGCACACTATCTCCGACACCTCCAGCCCCGAGGCCGCAGAGAAAGAGAAGAGCCAGCAGGGCAAGAGCGAGGATGCGG GGCCCGAGGACCCCTCCAAGAAGAAGCGGCAGCGGCGGCAGCGGACGCACTTCACCAGCCAGCAGCTGCAGGAGCTGGA GGCCACCTTCCAGCGGAACCGCTACCCCGACATGTCCACCCGCGAGGAGATCGCCGTCTGGACCAACCTCACCGAGGCC CGGGTTCGGGTTTGGTTCAAGAACCGCAGAGCCAAATGGAGGAAGAGAGAGAGGAACCAGCAGGCCGAGCTGTGCAAGA ACGGCTTCGGGCCGCAGTTCAATGGCCTGATGCAGCCCTACGACGACATGTACCCCGGGTACTCGTACAACAACTGGGC AGCCAAGGGCCTCACCTCCGCCTCCCTCTCCACCAAGAGCTTCCCCTTCTTCAACTCCATGAATGTCAACCCGCTGTCC TCCCAGAGCATGTTCTCCCCTCCCAACTCCATCTCCTCCATGAGCATGTCCTCCAGCATGGTGCCCTCGGCGGTCACCG GCGTGCCCGGCTCCGGCCTCAACAGCCTGAACAACTTGAACAACCTGAGCAACCCCTCCCTCAACTCGGCGGTGCCCAC GCCGGCCTGTCCGTACGCCCCTCCGACGCCTCCATACGTTTATAGGGACACGTGTAACTCGAGCTTGGCCAGCCTGAGA CTCAAAGCCAAGCAGCACTCCAGCTTTGGCTACGCCAGCGTGCAGAACCCCGCGTCCAACCTGAGCGCCTGCCAGTACG CCGTGGACAGGCCCGTGTGAGCACAACCCAACCCCGCTGCCACGGACTGAGCTGCGCTGGAGAGCGGTGGGCACCGTGG AGGAGGAGAGGGGGGAAGACGGAGAGAGAGGGGAAAGAGGAGAGAAGGGAGTAAAGGAAACCACTGAAACGAGATAGTT CCTTTGTTTTCAAAGGACCTCCTACAGATCGGGAGATCTTCGCTAAGAGTATTTCAGCAGTTACGAGGACATATATATA TATATATATATATACGGACAAATGGTTGACTGGATATGATATGACATTTTAATGTTCCTATAAGCTTGTTATTTTTTAA GTTTAGCGTTGTTAACATAAAAAATGACGGAAAGGATGTATATATATCGAAATGTCAAATTAATTTTATAAAAGCAGTT GTTAGTAATATCACAACAGTGTTTTTAAAAGGGTAGGCTTTAAAATAAAGCATGTTACACAGAAGCGATTAGGAGTTTT TCGCTTGCGAGCAAGGGAATGTATATACTAAATGCGACACTGTATGTTTCTAACATATAATTATTAAAAACAAAACATT GTGTGAATATCGGTTTTAGAATAGTACCTCTGGTGGATGCAAAGATGTTTCTGATATTGCAATGTAAAACATGCCCTGT GTATAACATTTCGTACAATATTCTCGTTTTACTTTTCAGCCGACACGAAAAATAATGTGTTTTATTTCATGGGAGTAAA AGATGCAGCATTCA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205010).