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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PITX3
paired like homeodomain 3

Gene

Official Symbol	PITX3
Official Full Name	paired like homeodomain 3
CGNC ID	4177
also known as	pituitary homeobox 3
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_421631
Polypeptide	XP_421631
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus	100496690, 398183			486161
Zebrafish	402974	ENSDARG00000070069	ZDB-GENE-041229-4	ZFIN:ZDB-GENE-041229-4

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	423756
Ensembl Gene	ENSGALG00000005613
KEGG	gga:423756

Entry 1

GEISHA Id	PITX3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	AAGTGGAGGAAACGGGAGAGGAAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGGATGCCAGTCAGTCAAGACAATG	cDNA Template Length	1095
Forward cDNA Template Probe	show NCCCCCCGTTACATGATGGCGCCTGATAGTAATGGATGAGATGTTCTGCATCAACCCTTGTATGTGGGAGGGGAGAAGG AGGGGGTTGGCCAANCACTGGAGAGCAGCCTCATGTCACCCCATCCCTGCATCCCGCTGTGGTGGCACATGGCTGTGCT AGGGAGGGGGGTTTACAGGGGCCAGGCCAAAATATGCTGAGCTCAGCTACCCACAAGCTATGCATGCTGCCTGCTGGGG CTCCTGCTTCCCCATGGGGCTTCCAGCACACTGTTTTGGTTTACTTACCAACAGGGAAAGTACGTGTTTGGAGGCCAAG ATCGGAGGGAGATCCCGAGGGTAAACCACATCCTAATACACCACACCCTAAATGGACAAGTCATCCTAGAAATTCCTCT CTGCCGATCTCTGAGTGCGAACGCCCACTAACACGCCCACTTTACTTCTCCCAACTTCGCCTAACACAATCTTCAAATC TGAGCCCTTGACAATAAACTAGGGCACCGGCCTGGCATGAAAGTGCTGCCTCTCTGCCTAATTGGGAAACTTAGACCTT ACCCCTGAAAACAGGGAGACCTTTAACCCATACCACAAGCGTAAAATCCTGGAAAAATGAGAATGGAAACCGTAGAGAA ACCAAAAAAG

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Area Opaca
Unlabeled Embryonic

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

stage 12

Anterior Intestinal Portal
Area Opaca
Ectoderm
Endoderm
Extraembryonic
Extraembryonic Mesoderm
Eye
Forebrain
Foregut
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Somites
extraembryonic endoderm

dorsal

13-18

stage 18

Eye
Midbrain
Pharyngeal Arches and Clefts
Somites

19-24

stage 19

stage 23

Eye
Limb Buds
Midbrain
Pharyngeal Arches and Clefts
Somites

25-26

stage 25

stage 26

Eye
Leg Mesenchyme
Midbrain
Myotome
Pharyngeal Arches and Clefts
Somites
Wing Mesenchyme

Entry 2

GEISHA Id	PITX3.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCAGATGGACCTCTATGAAGATTGTCTAACTATCGTATGGTGAATTTGACTGTCTTTCCCCACCCGACCTCCCTCCCTT CCTGGCCACCAAACACGTACCCTCCCTGTTGGTAAGGAAACCAAAACAGTCTGCTGGAAGCCCCATGGGGAAGCAGGAG CCCCAGCAGGCAGCATGCCTAGCTTGTGGGAAGCAGAGCTCAGCATATTTTGGCCTGGCCCCTCTAAACCCCCCTCCCT AGCACAGCCATGTGCCACCACAGTGGGATGCAGGGATGGGGTGACATGAGGCTGCTCTCCAGTGCTTGGCAACCCACTC CTTCTCCCCTCCCACATACAAGGGTTGATGCAGAACATCTCATCCATTTACTTATCAGGCAGCCAGTCATTGTCTTGAC TGACTGGCATCCCTTGAGAGCGCACCTGTAGGCACAGCCTTTCTGGTTTGAAGCCTTTAGGAACTGAGAGTTGTAAGGA TATAAGATATGTGCATGCATATATACCTTTATATATACATACACATAAGCAGACCTATATATTAAAATAGGCCATTTGT TTGTACAGGAAGTAACCTGTGAAGTAGACCTTAAAAACAAAAACCCCATAAAGCAAGCACGTCCACTGAGGTGG
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.