GEISHA - A Chicken Embryo Gene Expression Database
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TCF15
transcription factor 15

Gene
Official SymbolTCF15
Official Full Nametranscription factor 15
CGNC ID20222
also known astranscription factor 15|TCF-15|bHLH-EC2 protein|paraxis|protein bHLH-EC2|transcription factor 15 (basic helix-loop-helix)
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204946
PolypeptideNP_990277
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.22945
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6939MIM:601010
Mouse21407ENSMUSG00000068079All phenotypic alleles (1):Targeted, knock-out(1) MGI:104664
Xenopus549260, 493747488934
Zebrafish30159ENSDARG00000067544ZDB-GENE-980605-20ZFIN:ZDB-GENE-980605-20
Gene Ontology
Molecular FunctionDNA binding, protein dimerization activity
Biological Processmulticellular organismal development, regulation of transcription, DNA-templated, more...transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395788
Ensembl GeneENSGALG00000026276
KEGGgga:395788

Entry 1

GEISHA IdParaxis.Stockdale.2000Data SourcePublication
Complete cDNA Template Probeshow
GATTCGGCACGAGATCTCATTCTTCAAGGTTTTAGCAATAGATGTATGGATAGCACCACACAGACCTCGATCAGAGGAC
ACACCAATAAGGAGGTGCTTCTTCTTGTCCTCGGGTGCCTTAATTTCTGCTTTCTCATACAGTGCCAGTGCTCCTGTTC
CGTATACCTAGCAGGCTTCAGCTCCCTCTCAGCTCTTGCATACTTTGCTGCAGAAACCATCTTCATGGACTTCGTAATT
TTCTGAATGTTCTTGATGGACTTCAAACGCCTGGTAATGTCTTTCAGAGTTGCCATATTCCTGACTTGGCCCCATTGCG
GCTGGTACAGCACCACGGCGGAGCCCCGAGCGAACATGGCGGCGCCTCCACCACAGCTCCGCTCGGACGCAGGAGCGGA
GCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGCGGGGCGGGGGGCTCCGGCCAT
GGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATGCTGTCGGAGGACGAGGAGAAC
CGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGCGGGGGAAGGTGCCCAGGAAGA
CGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCGGACCCAGAGCGTCAACACCGC
CTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAGATCGAAACGCTGCGCCTGGCC
TCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACGGGCAGCCCTGCTTCAGTTCCA
TCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTGCCTCAGCAACCAGCGGAAGGG
GGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTGCGAGTGGCACGGAGATGAGCC
GGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAGACCGCAGCGGGAGGGAGGGAG
CTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGACACCAGAACCGGCACCAGCAC
TGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGTCCGATGGGGTGGGCTGGGATG
AGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCCGCAGGCGCTGTTGGTGCACGT
GCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationStockdale FE, Nikovits W Jr, Christ B. Molecular and cellular biology of avian somite development.Dev Dyn. 2000 Nov;219(3):304-21.
CopyrightCopyright © 2000 Wiley-Liss, Inc.
CommentsProbable probe, exact probe sequence not available from publication.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13
stage 13
Paraxial Mesoderm
Somites
 

Entry 2

GEISHA IdParaxis.Noden.2006Data SourcePublication
Complete cDNA Template Probeshow
CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
GGGGCGGGGGGCTCCGGCCATGGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATG
CTGTCGGAGGACGAGGAGAACCGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGC
GGGGGAAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCG
GACCCAGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAG
ATCGAAACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACG
GGCAGCCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTG
CCTCAGCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTG
CGAGTGGCACGGAGATGAGCCGGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAG
ACCGCAGCGGGAGGGAGGGAGCTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGA
CACCAGAACCGGCACCAGCACTGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGT
CCGATGGGGTGGGCTGGGATGAGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCC
GCAGGCGCTGTTGGTGCACGTGCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationNoden DM, Francis-West P. The differentiation and morphogenesis of craniofacial muscles. Dev Dyn. 2006 May;235(5):1194-218. Review.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946). Paraxis gene not annotated in Ensembl genebuild.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 16
stage 18
Head Mesenchyme
Somites
 

Entry 3

GEISHA IdParaxis.Bothe.2006Data SourcePublication
Complete cDNA Template Probeshow
AAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCGGACCC
AGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAGATCGA
AACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACGGGCAG
CCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTGCCTCA
GCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTGCGAGT
GGCACGGAGATGA
CitationBothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsThe paraxis gene is not present in the latest chicken genome assembly.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
Paraxial Mesoderm
 
7-10
stage 7
stage 8
stage 10
Head Mesenchyme
Paraxial Mesoderm
Somites
 

Entry 4

GEISHA IdParaxis.Ahmed.2006Data SourcePublication
Complete cDNA Template Probeshow
CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
GGGGCGGGGGGCTCCGGCCATGGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATG
CTGTCGGAGGACGAGGAGAACCGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGC
GGGGGAAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCG
GACCCAGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAG
ATCGAAACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACG
GGCAGCCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTG
CCTCAGCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTG
CGAGTGGCACGGAGATGAGCCGGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAG
ACCGCAGCGGGAGGGAGGGAGCTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGA
CACCAGAACCGGCACCAGCACTGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGT
CCGATGGGGTGGGCTGGGATGAGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCC
GCAGGCGCTGTTGGTGCACGTGCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationAhmed MU, Cheng L, Dietrich S. Establishment of the epaxial-hypaxial boundary in the avian myotome. Dev Dyn. 2006 Jul;235(7):1884-94.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946).Paraxis gene not annotated in Ensembl genome build
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
stage 22
stage 24
Dermatome
Myotome

Dermomyotome not in vocab.
Dermomytome is not in the available vocab.
25
stage 25
Dermatome
Myotome
Dermomyotome not in vocab.

Entry 5

GEISHA IdParaxis.Cheng.2004Data SourcePublication
Complete cDNA Template Probeshow
GATTCGGCACGAGATCTCATTCTTCAAGGTTTTAGCAATAGATGTATGGATAGCACCACACAGACCTCGATCAGAGGAC
ACACCAATAAGGAGGTGCTTCTTCTTGTCCTCGGGTGCCTTAATTTCTGCTTTCTCATACAGTGCCAGTGCTCCTGTTC
CGTATACCTAGCAGGCTTCAGCTCCCTCTCAGCTCTTGCATACTTTGCTGCAGAAACCATCTTCATGGACTTCGTAATT
TTCTGAATGTTCTTGATGGACTTCAAACGCCTGGTAATGTCTTTCAGAGTTGCCATATTCCTGACTTGGCCCCATTGCG
GCTGGTACAGCACCACGGCGGAGCCCCGAGCGAACATGGCGGCGCCTCCACCACAGCTCCGCTCGGACGCAGGAGCGGA
GCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGCGGGGCGGGGGGCTCCGGCCAT
GGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATGCTGTCGGAGGACGAGGAGAAC
CGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGCGGGGGAAGGTGCCCAGGAAGA
CGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCGGACCCAGAGCGTCAACACCGC
CTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAGATCGAAACGCTGCGCCTGGCC
TCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACGGGCAGCCCTGCTTCAGTTCCA
TCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTGCCTCAGCAACCAGCGGAAGGG
GGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTGCGAGTGGCACGGAGATGAGCC
GGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAGACCGCAGCGGGAGGGAGGGAG
CTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGACACCAGAACCGGCACCAGCAC
TGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGTCCGATGGGGTGGGCTGGGATG
AGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCCGCAGGCGCTGTTGGTGCACGT
GCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationCheng L, Alvares LE, Ahmed MU, El-Hanfy AS, Dietrich S. The epaxial-hypaxial subdivision of the avian somite. Dev Biol. 2004 Oct 15;274(2):348-69.
CopyrightReprinted from Developmental Biology, Volume 274, Issue 2, Louise Cheng, Lúcia E. Alvares, Mohi U. Ahmend, Amira S. El-Hanfy, and Susanne Dietrich, The epaxial-hypaxial subdivision of the avian somite, Pages 348-369, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsAuthors said probe came from (Šošic et al., 1997) who indicate a full length cDNA probe was used: Genbank Acc# U76665.
no images

Entry 6

GEISHA IdParaxis.James.2005Data SourcePublication
Complete cDNA Template Probeshow
CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
GGGGCGGGGGGCTCCGGCCATGGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATG
CTGTCGGAGGACGAGGAGAACCGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGC
GGGGGAAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCG
GACCCAGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAG
ATCGAAACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACG
GGCAGCCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTG
CCTCAGCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTG
CGAGTGGCACGGAGATGAGCCGGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAG
ACCGCAGCGGGAGGGAGGGAGCTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGA
CACCAGAACCGGCACCAGCACTGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGT
CCGATGGGGTGGGCTGGGATGAGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCC
GCAGGCGCTGTTGGTGCACGTGCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationJames RG, Schultheiss TM. Bmp signaling promotes intermediate mesoderm gene expression in a dose-dependent, cell-autonomous and translation-dependent manner. Dev Biol. 2005 Dec 1;288(1):113-25. Epub 2005 Oct 21.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
Somites
 

Entry 7

GEISHA IdParaxis.Wilm.2004Data SourcePublication
Complete cDNA Template Probeshow
CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
GGGGCGGGGGGCTCCGGCCATGGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATG
CTGTCGGAGGACGAGGAGAACCGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGC
GGGGGAAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCG
GACCCAGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAG
ATCGAAACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACG
GGCAGCCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTG
CCTCAGCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTG
CGAGTGGCACGGAGATGAGCCGGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAG
ACCGCAGCGGGAGGGAGGGAGCTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGA
CACCAGAACCGGCACCAGCACTGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGT
CCGATGGGGTGGGCTGGGATGAGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCC
GCAGGCGCTGTTGGTGCACGTGCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationWilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89.
CopyrightCopyright © 2004 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
Somites
 

Entry 8

GEISHA IdMESO1.Tenin.2010Data SourcePublication
Complete cDNA Template Probeshow
CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
GGGGCGGGGGGCTCCGGCCATGGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATG
CTGTCGGAGGACGAGGAGAACCGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGC
GGGGGAAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCG
GACCCAGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAG
ATCGAAACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACG
GGCAGCCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTG
CCTCAGCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTG
CGAGTGGCACGGAGATGAGCCGGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAG
ACCGCAGCGGGAGGGAGGGAGCTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGA
CACCAGAACCGGCACCAGCACTGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGT
CCGATGGGGTGGGCTGGGATGAGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCC
GCAGGCGCTGTTGGTGCACGTGCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationTenin G, Wright D, Ferjentsik Z, Bone R, McGrew MJ, Maroto M. The chick somitogenesis oscillator is arrested before all paraxial mesoderm is segmented into somites. BMC Dev Biol. 2010 Feb 25;10:24.
Copyrightauthors retain copyright of their article, and grant any third party the right to use reproduce and disseminate the article, subject to the terms of BMC Developmental Biology copyright and license agreement
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204946.2 )
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
Tail
 
25
stage 25
stage 25
Tail
 

Entry 9

GEISHA IdParaxis.Delfini.2000Data SourcePublication
Complete cDNA Template Probeshow
CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
GGGGCGGGGGGCTCCGGCCATGGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATG
CTGTCGGAGGACGAGGAGAACCGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGC
GGGGGAAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCG
GACCCAGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAG
ATCGAAACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACG
GGCAGCCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTG
CCTCAGCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTG
CGAGTGGCACGGAGATGAGCCGGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAG
ACCGCAGCGGGAGGGAGGGAGCTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGA
CACCAGAACCGGCACCAGCACTGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGT
CCGATGGGGTGGGCTGGGATGAGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCC
GCAGGCGCTGTTGGTGCACGTGCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationDelfini MC, Duprez D. Paraxis is expressed in myoblasts during their migration and proliferation in the chick limb bud. Mech Dev. 2000 Sep;96(2):247-51.
CopyrightCopyright © 2000 Elsevier Science Ireland Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946). Paraxis is also known as TCF15 in NCBI.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Dermomyotome
Wing
 
19-24
stage 19
stage 19
stage 20
stage 20
stage 21
stage 21
stage 21
stage 21
stage 21
stage 21
stage 22
stage 23
stage 24
stage 24
stage 24
stage 24
Dermomyotome
Leg Muscles
Limb Buds
Myotome
Somites
Wing
 
25-30
stage 28
stage 28
Leg Muscles
Limb Buds
 
31-44
stage 44
stage 44
stage 44
stage 44
  

Entry 10

GEISHA IdParaxis.Barnes.1997Data SourcePublication
Complete cDNA Template Probeshow
CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
GGGGCGGGGGGCTCCGGCCATGGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATG
CTGTCGGAGGACGAGGAGAACCGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGC
GGGGGAAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCG
GACCCAGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAG
ATCGAAACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACG
GGCAGCCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTG
CCTCAGCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTG
CGAGTGGCACGGAGATGAGCCGGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAG
ACCGCAGCGGGAGGGAGGGAGCTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGA
CACCAGAACCGGCACCAGCACTGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGT
CCGATGGGGTGGGCTGGGATGAGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCC
GCAGGCGCTGTTGGTGCACGTGCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationBarnes GL, Alexander PG, Hsu CW, Mariani BD, Tuan RS. Cloning and characterization of chicken Paraxis: a regulator of paraxial mesoderm development and somite formation. Dev Biol 1997 Sep 1;189(1):95-111.
CopyrightCopyright © 1997 Academic Press.
CommentsAuthors indicated the probe was synthesized from the full-length chicken Paraxis cDNA. Above sequence is obtained from NCBI Accession number NM_204946.2.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 5
stage 5
Hensen's Node
Paraxial Mesoderm
 
7-12
stage 8
stage 8
stage 8
Paraxial Mesoderm
Somites
 
13
stage 13
stage 13
stage 13
stage 13
stage 13
stage 13
stage 13
Dermatome
Dermomyotome
Paraxial Mesoderm
Sclerotome
Somites
 
all
 
  

Entry 11

GEISHA Idparaxis.Buchberger.1998Data SourcePublication
Complete cDNA Template Probeshow
CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
GGGGCGGGGGGCTCCGGCCATGGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATG
CTGTCGGAGGACGAGGAGAACCGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGC
GGGGGAAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCG
GACCCAGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAG
ATCGAAACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACG
GGCAGCCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTG
CCTCAGCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTG
CGAGTGGCACGGAGATGAGCCGGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAG
ACCGCAGCGGGAGGGAGGGAGCTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGA
CACCAGAACCGGCACCAGCACTGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGT
CCGATGGGGTGGGCTGGGATGAGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCC
GCAGGCGCTGTTGGTGCACGTGCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationBuchberger A, Seidl K, Klein C, Eberhardt H, Arnold HH. cMeso-1, a novel bHLH transcription factor, is involved in somite formation in chicken embryos. Dev Biol. 1998 Jul 15;199(2):201-15.
CopyrightCopyright © 1998 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946). paraxis is also known as TCF15 in NCBI.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Paraxial Mesoderm
Somites
Double labeled in situ: paraxis probe (red)
13-18
stage 13
stage 13
stage 15
stage 15
Paraxial Mesoderm
Somites
Double labeled in situ: paraxis probe (red)
31-44
stage 44
  

Entry 12

GEISHA IdParaxis.Fleming.2013Data SourcePublication
Complete cDNA Template Probeshow
CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
GGGGCGGGGGGCTCCGGCCATGGCTTTCACCATGCTGCGTCCCATGGCTGCCCGCGTGCTTTACCCCGACATCGGCATG
CTGTCGGAGGACGAGGAGAACCGCAGCGAGAGCGACACGTCGGACCAGTCCTACGGTTGTTGCGAGGGCGCGGAGGCGC
GGGGGAAGGTGCCCAGGAAGACGGGGCCCATGGTGATGGTGAAGCAGCGGCAGGCGGCCAACGCGCGAGAGCGGGACCG
GACCCAGAGCGTCAACACCGCCTTCACGGCCCTGCGGACCCTCATCCCCACCGAACCCGTGGATCGGAAGCTGTCCAAG
ATCGAAACGCTGCGCCTGGCCTCCAGCTACATCTCGCACCTGGCCAACGTTCTTCTTCTGGGCGAGGGCTGCGAGGACG
GGCAGCCCTGCTTCAGTTCCATCTACGGGGCCAAGGGCGATCTGGACAGCAAACAACCTCGCAGCATCTGCACCTTCTG
CCTCAGCAACCAGCGGAAGGGGGGCGGCCGCAGGGACCTCGGGGGCAACTGCCTGAAGGTGAGGGGGGTGACCCCGCTG
CGAGTGGCACGGAGATGAGCCGGGGCCACCAGCACCCGCAGGAGAACGGCGGCAGAGCCTGTCACAGCCAGCCCCAGAG
ACCGCAGCGGGAGGGAGGGAGCTGCCCGCCAGCCGCAGGCGATGGGGCACAGCAGGGCCATGGGCTGGCACCGCACCGA
CACCAGAACCGGCACCAGCACTGCGGCGAGAGGACGCTACTAGGGCTGGGAGAAAGGGGTCCCGCACCCCTGGGATGGT
CCGATGGGGTGGGCTGGGATGAGCAGCCCGCACATGGCCGGCGTCAATGAGCTCGGGGGGGGGATGGCAGCACAGCCCC
GCAGGCGCTGTTGGTGCACGTGCAGCCACTTGGAAAATAAACCTTATTTTTC
CitationFleming BM, Yelin R, James RG, Schultheiss TM. A role for Vg1/Nodal signaling in specification of the intermediate mesoderm. Development. 2013 Apr;140(8):1819-29
Copyright© 2013. Published by The Company of Biologists Ltd
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204946.2). Paraxis is also known in NCBI as TCF-15, bHLH-EC2 protein, protein bHLH-EC2, and transcription factor 15.
no images
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.22945

Mouse

EmageMGI:104664
EurexpressMGI:104664
MGI GXDMGI:104664

Frog

Xenbase488934

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980605-20
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