GEISHA 2.0

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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
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Gene Expression Report

Probe 1

GEISHA Id Pea3.Lunn.2007

NCBI Ensembl

Gene Name ETV4 Q9YHW5_CHICK

Aliases PEA3, ets domain protein, ETV4, ets variant gene 4 (E1A enhancer binding protein, E1AF), Official

Gene Description ets variant gene 4 (E1A enhancer binding protein, E1AF) Ets domain protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q9YHW5]

Gene Ontology

show

NCBI Nucleotide Hit

XM_418106 show details

Ensembl Genome Map contig view

Citation Lunn JS, Fishwick KJ, Halley PA, Storey KG. A spatial and temporal map of FGF/Erk1/2 activity and response repertoires in the early chick embryo. Dev Biol. 2007 Feb 15;302(2):536-52. Epub 2006 Oct 14.

Comments Insufficient information in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_418106.2).

Complete Sequence

show

CCGAGCTCGTGAAGGCGGCGATGCGCCAATGGGAGGCCGCCCCCGGGCGCTCAACGGCCTGAACGGCCGCGCGGGCGGG GCTGCGTGGGGCTCCGCATGGGCCGGGAGTCGCCACCGGGTGCGCTCCGAGAGCCGGGAGCTCCGCGGCCGCGGAGGTA GCGCCCGGGCGGCAGGATGAAGGGGTACGTGGACCAGCAGGTGCCGTTCACTTTCCCCCAGCCGCCGCCGGGCCATGCG GGCTCCGGGTGCCGGACTCCGACGGGCGCTGCGAAGAGCCCCATGGAGCCGGGCTTGCTGCCGGCGCAGGATTCGGAAG ACCTCTTCCAGGACTTGAGCCAGTTCCAGGAGACTTGGCTGACAGAAGCTCAGGTTCCAGACAGCGATGAGCAATTTGT GCCTGACTTCCATTCAGAAAACCCTTTTCATAGTCCTCCTGCAAAGATTAAAAAGGAACCACAGAGTCCCTCCTCGGAC CCCACGCTGTCCTGCAACCACAAGCAGCCATTCCAGTACCGCAATGGAGAGCAGTGCCTTTATGCCAGTGCCTATGATC AACCCAGACCGGTTGGGATCAAATCCCCTGACCCAGGAACCCCAATCCAGTCACCGCTCCAGCAGTTCCCCAGACAGGA CAGGAACTTCCTGACCCCTTCAGGGCCACCCCACCCCACATCCAGCTGTGGATACCTCATTGAAAACAGCTCTGCCTAC CAGCCACCTGTGGAGATGTGCCACTCCTTCCCCTCCTCCCAGGGCATGGCCCAGGATGCTCCCATCGCCTACCAGCGCC CCATGTCTGAGCAATGCCTTCAGTTCCCCCCGCAGGGCTTCAAGCAGGAGTTCCATGACCCACAGTATGAGCAGGCGGG CAGCAGCTGCCAGTACCCAGCAGCCGTGGTCATCAAGCAGGAGCAGGTGGACTACATGTATGACTCAGGCTGCAGCTAT GACAAGCAGATGAGGCCCTTTGCTGACGATGTCTGCGTTGTTCCAGAAAAATTTGAAGCAGGTGACATCAAGCAGGAGG TCGGAGGGTACCGGGAGGGCCCTCCCTATCAGCGGAGGGGATCTCTCCAGCTCTGGCAGTTCCTTGTGGCTCTATTGGA TGATCCCACCAACTCCCACTTCATTGCCTGGACTGGAAGAGGGATGGAGTTCAAGCTGATTGAGCCAGAAGAGGTAGCC AGGCTGTGGGGCATCCAGAAGAACCGGCCAGCCATGAACTACGACAAGCTGAGCCGCTCTCTTCGCTACTATTATGAGA AAGGCATCATGCAGAAGGTGGCGGGGGAACGCTACGTCTACAAGTTTGTGTGTGAGCCCGAGGCTCTGTTCTCTCTGGC CTTCCCTGACAACCAGCGGCCGGCCCTGAAGGCAGAGCTGGAGAGGCAGATCAGCGAGGAGGACACGGTGCCTCTGTCC CACCTGGATGAGAGCACTGCTTACCTGCCTGACCTTGGGAGCCTCCCCCCGCAGCTCTATGGCAAAGGTTACACCTACT AGTGCTGCTGGAGCTGTGTGCCACCCTGATCGTGTATATAAGGAGATGTCTGGTTAGTAACCAAGCTGTATAGGTGTTT TCCCAGGCCAGCCTGGGGCTGCACAGAGCTATGATACCTGCTGAGGGCAGGAGAAGGGTTCAGGTCAATGTGTGGCTGG ATAACCAGCAGGGGGTCAATGGGGCTGCTGGGGGCTGGTGGTGCCAACCCCATATCTGGCAGGATGGGACCACTCCTCA GTGTGAAGTCATCACCTGAGCAGGGCAGCTGTGGCTTCCCAGCATCACAGGTGGTCGCTGCCTCCAGCAGGAGCCCACC TACAGCATTCCTCCCCCCTTGGCAGATGTGATGCCATCCTGCTTGGCTTCTTCTCACAGCTGGGGATGCTACAGCTGCT GCTGGCTGCCTTCCTCCAGTGCTGACCCCCTGGGTATATTGCCCTCAGCCAGGGCAGCCCAGACCTGTGCAGATTCACC TCCTCAGGGCCAACCTTCTCTTCTGCCCAGGAGAGCTGTGCCATGTGGCTGCAAACCAAATGCCTTCCCCTGAATTGCT CTGTTGGCACTGAGAAGTGCCTGTCCCGTATGTGCATGCTCCTGCATTGCCACCTCCTTGCCTGCAGCACCTCATGCCA GGGCTGCCACATGTTCTTGAGCTGGGCAGCTGAAGGTGTGGGCCAGGGTGAGAGCACTCCCACTGTGCATGGCCCTAAA ACCAGCACAGGGCAAGCACAGAGCTTCCTGATGTGCTGTGCTGGGTATGAGGGGAGTCAAATCAATGTCATAGCCTCTA CCACCAGGCCATATGTGTGGCATGGCTGTTCCAGTCTAGACAAGGGCTAGAACCGTCTCTAGGATCTTTGGAGGCTCAG GGACTTGGCTAGAAAATCACCTGAGGTGTGAAAAGAACCTGGGGGGGGGGGAGGCATTATGAATACACTCTACAAAGTA ACTTAAATCAGAGCTCTTAACATCTGAATTCAGACCCAACCTCTGCATGCGTTTACCTCTTTGAAGGAAAGTCTGAAGT GTTGGAAAGGCAGATATCTCTGCAGCCCGAAGCAGCACTTTAACTGTTTTTCCCCAGTAGTGAACACTTACAGTGGGCA CCACATCCCCGGGGAGAGGTGCTGTGCTTCTTAATTAGCTGCTCCAGCCCAGCGCCCATTGGGGTGAGGAGCTGCGTGG TGAATCTGTACCAAAACAGCCTCTTTCCTCCTTGACTGAAAGACCCATTCCGTCTGTGCTTCTGCCCTGCAGGGCTGGC AGCAGCCCCTCCTGGGGGGCTCAGGAGCAGCCCCTTCTGCTGCTGCCTTCTCATGCTCAGCCCTGGGCTTCCAGCCCTG CTGCCTCATCCCACTCTACCGCGTGCCTCCACTGCCCCAAAGTGATGGAGAAGGGGAACCCTGCTGTTGGTATAATCTG CCTTTACTATTTATGAGTGTAAAAAAAATACTATAATTAATAAATTGGTCTATGTCTTTG

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 1

stage 3

Epiblast

Primitive Streak

Stage X

4-6

stage 4

stage 6

Hensen's Node

Hindbrain

Lateral Plate Mesoderm

Epressed in neural floor plate, precardiac mesoderm

7-10

stage 8

stage 10

Ectoderm

Forebrain

Hindbrain

Intermediate Mesoderm

Undetectable in neural tube flanked by somites

Probe 2

GEISHA Id	PEA3
	NCBI	Ensembl
Gene Name	ETV4	Q9YHW5_CHICK
Aliases	PEA3, ets domain protein, ETV4, ets variant gene 4 (E1A enhancer binding protein, E1AF), Official
Gene Description	ets variant gene 4 (E1A enhancer binding protein, E1AF)	Ets domain protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q9YHW5]
Gene Ontology		show GO:0003677 DNA binding IEA GO:0003700 transcription factor activity IEA GO:0005634 nucleus IEA GO:0006355 regulation of transcription, DNA-dependent IEA GO:0008045 motor axon guidance IEA GO:0009887 organ morphogenesis IEA GO:0016563 transcription activator activity IEA GO:0043565 sequence-specific DNA binding IEA GO:0045941 positive regulation of transcription IEA
Ensembl Genome Map	contig view
Complete Sequence	show CCGAGCTCGTGAAGGCGGCGATGCGCCAATGGGAGGCCGCCCCCGGGCGCTCAACGGCCTGAACGGCCGCGCGGGCGGG GCTGCGTGGGGCTCCGCATGGGCCGGGAGTCGCCACCGGGTGCGCTCCGAGAGCCGGGAGCTCCGCGGCCGCGGAGGTA GCGCCCGGGCGGCAGGATGAAGGGGTACGTGGACCAGCAGGTGCCGTTCACTTTCCCCCAGCCGCCGCCGGGCCATGCG GGCTCCGGGTGCCGGACTCCGACGGGCGCTGCGAAGAGCCCCATGGAGCCGGGCTTGCTGCCGGCGCAGGATTCGGAAG ACCTCTTCCAGGACTTGAGCCAGTTCCAGGAGACTTGGCTGACAGAAGCTCAGGTTCCAGACAGCGATGAGCAATTTGT GCCTGACTTCCATTCAGAAAACCCTTTTCATAGTCCTCCTGCAAAGATTAAAAAGGAACCACAGAGTCCCTCCTCGGAC CCCACGCTGTCCTGCAACCACAAGCAGCCATTCCAGTACCGCAATGGAGAGCAGTGCCTTTATGCCAGTGCCTATGATC AACCCAGACCGGTTGGGATCAAATCCCCTGACCCAGGAACCCCAATCCAGTCACCGCTCCAGCAGTTCCCCAGACAGGA CAGGAACTTCCTGACCCCTTCAGGGCCACCCCACCCCACATCCAGCTGTGGATACCTCATTGAAAACAGCTCTGCCTAC CAGCCACCTGTGGAGATGTGCCACTCCTTCCCCTCCTCCCAGGGCATGGCCCAGGATGCTCCCATCGCCTACCAGCGCC CCATGTCTGAGCAATGCCTTCAGTTCCCCCCGCAGGGCTTCAAGCAGGAGTTCCATGACCCACAGTATGAGCAGGCGGG CAGCAGCTGCCAGTACCCAGCAGCCGTGGTCATCAAGCAGGAGCAGGTGGACTACATGTATGACTCAGGCTGCAGCTAT GACAAGCAGATGAGGCCCTTTGCTGACGATGTCTGCGTTGTTCCAGAAAAATTTGAAGCAGGTGACATCAAGCAGGAGG TCGGAGGGTACCGGGAGGGCCCTCCCTATCAGCGGAGGGGATCTCTCCAGCTCTGGCAGTTCCTTGTGGCTCTATTGGA TGATCCCACCAACTCCCACTTCATTGCCTGGACTGGAAGAGGGATGGAGTTCAAGCTGATTGAGCCAGAAGAGGTAGCC AGGCTGTGGGGCATCCAGAAGAACCGGCCAGCCATGAACTACGACAAGCTGAGCCGCTCTCTTCGCTACTATTATGAGA AAGGCATCATGCAGAAGGTGGCGGGGGAACGCTACGTCTACAAGTTTGTGTGTGAGCCCGAGGCTCTGTTCTCTCTGGC CTTCCCTGACAACCAGCGGCCGGCCCTGAAGGCAGAGCTGGAGAGGCAGATCAGCGAGGAGGACACGGTGCCTCTGTCC CACCTGGATGAGAGCACTGCTTACCTGCCTGACCTTGGGAGCCTCCCCCCGCAGCTCTATGGCAAAGGTTACACCTACT AGTGCTGCTGGAGCTGTGTGCCACCCTGATCGTGTATATAAGGAGATGTCTGGTTAGTAACCAAGCTGTATAGGTGTTT TCCCAGGCCAGCCTGGGGCTGCACAGAGCTATGATACCTGCTGAGGGCAGGAGAAGGGTTCAGGTCAATGTGTGGCTGG ATAACCAGCAGGGGGTCAATGGGGCTGCTGGGGGCTGGTGGTGCCAACCCCATATCTGGCAGGATGGGACCACTCCTCA GTGTGAAGTCATCACCTGAGCAGGGCAGCTGTGGCTTCCCAGCATCACAGGTGGTCGCTGCCTCCAGCAGGAGCCCACC TACAGCATTCCTCCCCCCTTGGCAGATGTGATGCCATCCTGCTTGGCTTCTTCTCACAGCTGGGGATGCTACAGCTGCT GCTGGCTGCCTTCCTCCAGTGCTGACCCCCTGGGTATATTGCCCTCAGCCAGGGCAGCCCAGACCTGTGCAGATTCACC TCCTCAGGGCCAACCTTCTCTTCTGCCCAGGAGAGCTGTGCCATGTGGCTGCAAACCAAATGCCTTCCCCTGAATTGCT CTGTTGGCACTGAGAAGTGCCTGTCCCGTATGTGCATGCTCCTGCATTGCCACCTCCTTGCCTGCAGCACCTCATGCCA GGGCTGCCACATGTTCTTGAGCTGGGCAGCTGAAGGTGTGGGCCAGGGTGAGAGCACTCCCACTGTGCATGGCCCTAAA ACCAGCACAGGGCAAGCACAGAGCTTCCTGATGTGCTGTGCTGGGTATGAGGGGAGTCAAATCAATGTCATAGCCTCTA CCACCAGGCCATATGTGTGGCATGGCTGTTCCAGTCTAGACAAGGGCTAGAACCGTCTCTAGGATCTTTGGAGGCTCAG GGACTTGGCTAGAAAATCACCTGAGGTGTGAAAAGAACCTGGGGGGGGGGGAGGCATTATGAATACACTCTACAAAGTA ACTTAAATCAGAGCTCTTAACATCTGAATTCAGACCCAACCTCTGCATGCGTTTACCTCTTTGAAGGAAAGTCTGAAGT GTTGGAAAGGCAGATATCTCTGCAGCCCGAAGCAGCACTTTAACTGTTTTTCCCCAGTAGTGAACACTTACAGTGGGCA CCACATCCCCGGGGAGAGGTGCTGTGCTTCTTAATTAGCTGCTCCAGCCCAGCGCCCATTGGGGTGAGGAGCTGCGTGG TGAATCTGTACCAAAACAGCCTCTTTCCTCCTTGACTGAAAGACCCATTCCGTCTGTGCTTCTGCCCTGCAGGGCTGGC AGCAGCCCCTCCTGGGGGGCTCAGGAGCAGCCCCTTCTGCTGCTGCCTTCTCATGCTCAGCCCTGGGCTTCCAGCCCTG CTGCCTCATCCCACTCTACCGCGTGCCTCCACTGCCCCAAAGTGATGGAGAAGGGGAACCCTGCTGTTGGTATAATCTG CCTTTACTATTTATGAGTGTAAAAAAAATACTATAATTAATAAATTGGTCTATGTCTTTG

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Head Mesenchyme

Intermediate Mesoderm

Lateral Plate Mesoderm

Paraxial Mesoderm

13-18

stage 15

stage 18

Face Mesenchyme

Heart Tube

Intermediate Mesoderm

Lateral Plate Mesoderm

Limb Buds

Paraxial Mesoderm

Pharyngeal Arches and Clefts

19-24

stage 24

Pharyngeal Arches and Clefts

Somites

Probe 3

GEISHA Id Pea3.McCabe.2006

NCBI Ensembl

Gene Name ETV4 Q9YHW5_CHICK

Aliases PEA3, ets domain protein, ETV4, ets variant gene 4 (E1A enhancer binding protein, E1AF), Official

Gene Description ets variant gene 4 (E1A enhancer binding protein, E1AF) Ets domain protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q9YHW5]

Gene Ontology

show

NCBI Nucleotide Hit

XM_418106 show details

Ensembl Genome Map contig view

Citation McCabe KL, McGuire C, Reh TA. Pea3 expression is regulated by FGF signaling in developing retina. Dev Dyn. 2006 Feb;235(2):327-35.

Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI XM_418106.2

Complete Sequence

show

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

stage 25

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