GEISHA - A Chicken Embryo Gene Expression Database
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CDH4
cadherin 4

Gene
Official SymbolCDH4
Official Full Namecadherin 4
CGNC ID50945
also known ascadherin-4, cadherin-4|R-CAD|R-cadherin|cadherin 4, type 1, R-cadherin (retinal)|retinal cadherin, Cadherin-4 precursor , Retinal-cadherin, R-cadherin, R-CAD, CDH4
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001004391
PolypeptideNP_001004391
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3334
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1002ENSG00000179242MIM:603006
Mouse12561ENSMUSG00000000305All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:99218
Xenopus100144729958012
Zebrafish30297ENSDARG00000015002ZDB-GENE-991207-1ZFIN:ZDB-GENE-991207-1
Gene Ontology
Molecular Functioncalcium ion binding
Biological Processhomophilic cell adhesion
Cellular Componentintegral component of membrane, plasma membrane
Links to other databases
Entrez Gene419222
Ensembl Gene
KEGGgga:419222

Entry 1

GEISHA IdCDH4.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTCACGACCAGCACTTATTCGG
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGCGTTTCATCCACACCACAAAGAGcDNA Template Length1099
Forward cDNA Template Probeshow
AGATCAGGATGGCGATGATGGCTCCCGTGCCCAGTCCTGCAGCAGCCACCGCCCCAATAGTGGTGCAGTCACCGTTCTC
GTCACANGGGCACACCTTCACTTTGATGATGGACGTGTTGTACAAGGGGGGATTTCCCGAGTCTGTCACTATGATTGGC
ACATCATACACACCGGCCTCCAGGTACATGATCCGTAAACTAAGCTGGGCGTAATCACCATTCAGTCGTGTTATGGTCC
AGTTCTTCCTCACCGCAGATGGCACACTTGGCAGCTCGAAGACAAAGGGCCCAACGTTTGGATCGATGTCAGCATCTGC
GGCTGTGATATTGATGACATTCAGGTTTGGCTTTTCACAGATCTGTGCTTCCTTTGGCAGGAGCTCAGGAGCATTATCG
TTGATGTCGATTAGGTAGATCTGCAGAGTGCCAGTGCCGCTGGCTGGGGGTATACCATTGTCAGCCGCCAAGAATGTGG
CCTCGTAGACATTATTCTTAATGTAGTCTGACTCTCGATCAAGGACAGCAGCAGTAGTGATCTGACCATTTGTGGCATT
AATGTTCAGCCAGTTTGCAGGATCTGACAGCTTAGAGTATCTTACTGCCTGCTGCATGAAGCGATCGGGATCTACGGCT
GAAAAGGTCGTGAGGACCGTCCCCGTGGGCACGCCTTCCTCCAGCCTGATGAGCTTGTGGTTTGTTGGGAAGTACGGCG
CTTCGTTGACATCTGTAACTGAAATGGTGACTCCTGCTGTTGACTGGAAGGACATCTGGATTCCGCTGGCCAGGGGGGC
TTGGTTGGATACCATCACTGTCANCATGAACGCTCTGTTCATCTCATAGTCNACTGCCTTGACCACAGTTACCATGCCC
CTCATTGGTGACGGGGTCNGTCCGGATGGTGAAGTGGCCAAAGGGGTCCCCACTGATGATGCGGTAAATGGCATTCCAN
TTGGGAAAATGAAGGCTGGTCCCNGGTCCATCACTGTCNAANTTTGCAACCACNANCCTCCACTCTGTTCTCAGGAACT
TCCCCC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Notochord
 
7-12
stage 7
stage 8
stage 9
stage 11
stage 12
stage 12
stage 12
Amnion
Anterior Neuropore
Extraembryonic
Forebrain
Headfold
Heart
Hindbrain
Intermediate Mesoderm
Midbrain
Notochord
Somites
Spinal Cord
 
13-18
stage 17
stage 17
stage 18
stage 18
Cranial PNS
Dermomyotome
Liver
Notochord
Pharyngeal Arches and Clefts
 
19-24
stage 21
stage 21
stage 21
stage 21
stage 22
Cranial PNS
Dermomyotome
Myotome
Notochord
Pharyngeal Arches and Clefts
Spinal Cord
 
25-26
stage 26
Cranial PNS
Leg Mesenchyme
Myotome
Pharyngeal Arches and Clefts
Wing Mesenchyme
 

Entry 2

GEISHA IdR-Cad.Jiankai.2007Data SourcePublication
Complete cDNA Template Probeshow
CGCTTCACCTGCAGCCCAGAGCGGGCACCGAGCGGCGGTGGTGGGGTTCGAGAGTGTGCGTGGCTGTCGTCGGTGTCCT
CGCGCAGTGCGGCCGGAGAGCGGCACGGGGCGGCCGAGCGCACCGCCACGGCCCGGCGGGCGGGCGCCGCCGGGGCGAT
GAGGACCGGCTCGCGGCTGCTGCTGGTGCTGCTCGTCTGGGGCTCGGCGGCGGCACTCAATGGGGATCTTACAGTTAGA
CCCACATGCAAGCCTGGCTTTTCAGAAGAAGACTATACAGCGTTCGTCTCCCAGAATATCATGGAAGGGCAGAAGCTAC
TCAAAGTAAAATTTAATAACTGTGCCGGTAACAAGGGAGTTCGGTACGAAACCAACAGCCTGGACTTCAAGGTGAGAGC
AGATGGGACCATGTATGCTGTCCACCAGGTGCAAATGGCCTCGAAGCAGCTGATCCTGATGGTGACCGCCTGGGATCCA
CAGACTCTGGGCAGGTGGGAGGCGATCGTCAGGTTTCTGGTGGGAGAAAAGCTGCAGCACAATGGACACAAGCCAAAGG
GAAGGAAGAGCGGACCTGTGGACCTGGCACAGCAGCAAAGTGACACCCTGCTCCCCTGGCGCCAACATCAGAGCGCAAA
AGGCCTCCGGAGGCAGAAGAGAGACTGGGTCATTCCCCCAATCAACGTGCCAGAAAATTCAAGGGGCCCCTTTCCGCAG
CAACTGGTTCGGATTCGTTCCGATAAGGACAAAGAGATCCATATCAGGTACAGCATCACCGGAGTGGGAGCCGACCAGC
CACCAATGGAAGTCTTCAGCATTGACCCTGTGTCTGGGAGGATGTATGTGACCCGCCCTATGGACAGAGAGGAAAGAGC
TTCCTACCATCTCCGGGCTCATGCAGTGGATATGAATGGAAACAAGGTGGAGAATCCTATTGACCTTTACATCTATGTG
ATTGATATGAATGACAACAGACCGGAGTTTATAAACCAAGTCTATAATGGATCTGTTGATGAAGGCTCTAAACCAGGTA
CCTACGTGATGACAGTGACGGCGAATGACGCTGATGACAGCACCACAGCGAACGGGATGGTGAGATATCGGATCGTGAC
TCAGACCCCCCAGAGCCCATCGCAGAACATGTTCACCATTAACAGCGAGACAGGAGATATCGTCACCGTGGCTGCTGGC
CTTGACAGGGAGAAAGTTCAGCAGTATATGGTCATCGTTCAAGCCACAGATATGGAAGGCAATCTTAACTATGGTCTCT
CAAACACAGCGACTGCAATCATTACGGTGACAGATGTGAATGACAACCCCCCTGAATTCACGACCAGCACTTATTCGGG
GGAAGTTCCTGAGAACAGAGTGGAGGTTGTGGTTGCAAATTTGACAGTGATGGACCGGGACCAGCCTCACTCTCCCAAC
TGGAATGCCATCTACCGCATCATCAGTGGGGACCCCTCTGGCCACTTCACCATCCGGACAGACCCCGTCACCAATGAGG
GCATGGTAACTGTGGTCAAGGCAGTCGACTATGAGATGAACAGAGCATTCATGCTGACAGTGATGGTATCCAACCAAGC
CCCCCTGGCCAGCGGAATCCAGATGTCCTTCCAGTCAACAGCAGGAGTCACCATTTCAGTTACAGATGTCAACGAAGCG
CCGTACTTCCCAACAAACCACAAGCTCATCAGGCTGGAGGAAGGCGTGCCCACGGGGACGGTCCTCACGACCTTTTCAG
CCGTAGATCCCGATCGCTTCATGCAGCAGGCAGTAAGATACTCTAAGCTGTCAGATCCTGCAAACTGGCTGAACATTAA
TGCCACAAATGGTCAGATCACTACTGCTGCTGTCCTTGATCGAGAGTCAGACTACATTAAGAATAATGTCTACGAGGCC
ACATTCTTGGCGGCTGACAATGGTATACCCCCAGCCAGCGGCACTGGCACTCTGCAGATCTACCTAATCGACATCAACG
ATAATGCTCCTGAGCTCCTGCCAAAGGAAGCACAGATCTGTGAAAAGCCAAACCTGAATGTCATCAATATCACAGCCGC
AGATGCTGACATCGATCCAAACGTTGGGCCCTTTGTCTTCGAGCTGCCAAGTGTGCCATCTGCGGTGAGGAAGAACTGG
ACCATAACACGACTGAATGGTGATTACGCCCAGCTTAGTTTACGGATCATGTACCTGGAGGCTGGTGTGTATGATGTGC
CAATCATAGTGACAGACTCGGGAAACCCCCCCTTGTACAACACGTCCATCATCAAAGTGAAGGTGTGCCCGTGTGACGA
GAACGGTGACTGCACCACTATTGGGGCGGTGGCTGCTGCAGGACTGGGCACGGGAGCCATCATCGCCATCCTGATCTGC
ATCATTATCTTACTAACCATGGTGCTGCTCTTTGTGGTGTGGATGAAACGCCGGGAGAAGGAGCGTCACACCAAGCAGC
TCCTCATTGACCCCGAGGATGACGTGAGGGACAACATCCTGAAGTACGACGAGGAGGGTGGTGGAGAAGAAGATCAGGA
TTACGACTTAAGCCAGCTCCAGCAGCCAGAGACCATGGATCACGTGCTGAACAAGGCACCTGGAGTCCGAAGGGTGGAT
GAGAGACCGATCGGTGCTGAACCACAGTATCCTATAAGACCAGTAATCCCCCATCCTGGGGATATTGGTGACTTTATAA
ATGAGGGCCTGCGTGCAGCAGACAATGACCCCACGGCTCCCCCGTACGACTCGCTGCTGGTCTTTGACTACGAGGGCAG
CGGCTCCACCGCCGGCTCCGTCAGCTCCCTCAACTCCTCCAGCTCCGGGGACCAGGACTACGACTACCTGAACGACTGG
GGGCCGCGCTTCAAGAAGCTGGCAGACATGTATGGAGGAGGCGAGGAGGATTGAACTGACCTCACTTATTTAAAAAAAA
AAAAAAATAGAAGGAAAAAAAAAAAAAAAAA
CitationLuo J, Wang H, Lin J, Redies C. Cadherin expression in the developing chicken cochlea. Dev Dyn. 2007 Aug;236(8):2331-7.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsAuthors stated "For in situ hybridization, purified plasmids containing the full-length sequences encoding chicken Cad6B, Cad7, N-Cad, and R-Cad (kind gifts of Dr. S. Nakagawa and Dr. M. Takeichi), ... were used as templates for the in vitro synthesis of cRNA probes." Sequence below was obtained from NCBI (NM_001004391).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 37
stage 40
stage 44
Ear/Otic Placcode
 

Entry 3

GEISHA IdRCDH.Lin.2010Data SourcePublication
Complete cDNA Template Probeshow
CGCTTCACCTGCAGCCCAGAGCGGGCACCGAGCGGCGGTGGTGGGGTTCGAGAGTGTGCGTGGCTGTCGTCGGTGTCCT
CGCGCAGTGCGGCCGGAGAGCGGCACGGGGCGGCCGAGCGCACCGCCACGGCCCGGCGGGCGGGCGCCGCCGGGGCGAT
GAGGACCGGCTCGCGGCTGCTGCTGGTGCTGCTCGTCTGGGGCTCGGCGGCGGCACTCAATGGGGATCTTACAGTTAGA
CCCACATGCAAGCCTGGCTTTTCAGAAGAAGACTATACAGCGTTCGTCTCCCAGAATATCATGGAAGGGCAGAAGCTAC
TCAAAGTAAAATTTAATAACTGTGCCGGTAACAAGGGAGTTCGGTACGAAACCAACAGCCTGGACTTCAAGGTGAGAGC
AGATGGGACCATGTATGCTGTCCACCAGGTGCAAATGGCCTCGAAGCAGCTGATCCTGATGGTGACCGCCTGGGATCCA
CAGACTCTGGGCAGGTGGGAGGCGATCGTCAGGTTTCTGGTGGGAGAAAAGCTGCAGCACAATGGACACAAGCCAAAGG
GAAGGAAGAGCGGACCTGTGGACCTGGCACAGCAGCAAAGTGACACCCTGCTCCCCTGGCGCCAACATCAGAGCGCAAA
AGGCCTCCGGAGGCAGAAGAGAGACTGGGTCATTCCCCCAATCAACGTGCCAGAAAATTCAAGGGGCCCCTTTCCGCAG
CAACTGGTTCGGATTCGTTCCGATAAGGACAAAGAGATCCATATCAGGTACAGCATCACCGGAGTGGGAGCCGACCAGC
CACCAATGGAAGTCTTCAGCATTGACCCTGTGTCTGGGAGGATGTATGTGACCCGCCCTATGGACAGAGAGGAAAGAGC
TTCCTACCATCTCCGGGCTCATGCAGTGGATATGAATGGAAACAAGGTGGAGAATCCTATTGACCTTTACATCTATGTG
ATTGATATGAATGACAACAGACCGGAGTTTATAAACCAAGTCTATAATGGATCTGTTGATGAAGGCTCTAAACCAGGTA
CCTACGTGATGACAGTGACGGCGAATGACGCTGATGACAGCACCACAGCGAACGGGATGGTGAGATATCGGATCGTGAC
TCAGACCCCCCAGAGCCCATCGCAGAACATGTTCACCATTAACAGCGAGACAGGAGATATCGTCACCGTGGCTGCTGGC
CTTGACAGGGAGAAAGTTCAGCAGTATATGGTCATCGTTCAAGCCACAGATATGGAAGGCAATCTTAACTATGGTCTCT
CAAACACAGCGACTGCAATCATTACGGTGACAGATGTGAATGACAACCCCCCTGAATTCACGACCAGCACTTATTCGGG
GGAAGTTCCTGAGAACAGAGTGGAGGTTGTGGTTGCAAATTTGACAGTGATGGACCGGGACCAGCCTCACTCTCCCAAC
TGGAATGCCATCTACCGCATCATCAGTGGGGACCCCTCTGGCCACTTCACCATCCGGACAGACCCCGTCACCAATGAGG
GCATGGTAACTGTGGTCAAGGCAGTCGACTATGAGATGAACAGAGCATTCATGCTGACAGTGATGGTATCCAACCAAGC
CCCCCTGGCCAGCGGAATCCAGATGTCCTTCCAGTCAACAGCAGGAGTCACCATTTCAGTTACAGATGTCAACGAAGCG
CCGTACTTCCCAACAAACCACAAGCTCATCAGGCTGGAGGAAGGCGTGCCCACGGGGACGGTCCTCACGACCTTTTCAG
CCGTAGATCCCGATCGCTTCATGCAGCAGGCAGTAAGATACTCTAAGCTGTCAGATCCTGCAAACTGGCTGAACATTAA
TGCCACAAATGGTCAGATCACTACTGCTGCTGTCCTTGATCGAGAGTCAGACTACATTAAGAATAATGTCTACGAGGCC
ACATTCTTGGCGGCTGACAATGGTATACCCCCAGCCAGCGGCACTGGCACTCTGCAGATCTACCTAATCGACATCAACG
ATAATGCTCCTGAGCTCCTGCCAAAGGAAGCACAGATCTGTGAAAAGCCAAACCTGAATGTCATCAATATCACAGCCGC
AGATGCTGACATCGATCCAAACGTTGGGCCCTTTGTCTTCGAGCTGCCAAGTGTGCCATCTGCGGTGAGGAAGAACTGG
ACCATAACACGACTGAATGGTGATTACGCCCAGCTTAGTTTACGGATCATGTACCTGGAGGCTGGTGTGTATGATGTGC
CAATCATAGTGACAGACTCGGGAAACCCCCCCTTGTACAACACGTCCATCATCAAAGTGAAGGTGTGCCCGTGTGACGA
GAACGGTGACTGCACCACTATTGGGGCGGTGGCTGCTGCAGGACTGGGCACGGGAGCCATCATCGCCATCCTGATCTGC
ATCATTATCTTACTAACCATGGTGCTGCTCTTTGTGGTGTGGATGAAACGCCGGGAGAAGGAGCGTCACACCAAGCAGC
TCCTCATTGACCCCGAGGATGACGTGAGGGACAACATCCTGAAGTACGACGAGGAGGGTGGTGGAGAAGAAGATCAGGA
TTACGACTTAAGCCAGCTCCAGCAGCCAGAGACCATGGATCACGTGCTGAACAAGGCACCTGGAGTCCGAAGGGTGGAT
GAGAGACCGATCGGTGCTGAACCACAGTATCCTATAAGACCAGTAATCCCCCATCCTGGGGATATTGGTGACTTTATAA
ATGAGGGCCTGCGTGCAGCAGACAATGACCCCACGGCTCCCCCGTACGACTCGCTGCTGGTCTTTGACTACGAGGGCAG
CGGCTCCACCGCCGGCTCCGTCAGCTCCCTCAACTCCTCCAGCTCCGGGGACCAGGACTACGACTACCTGAACGACTGG
GGGCCGCGCTTCAAGAAGCTGGCAGACATGTATGGAGGAGGCGAGGAGGATTGAACTGACCTCACTTATTTAAAAAAAA
AAAAAAATAGAAGGAAAAAAAAAAAAAAAAA
CitationLin J, Luo J, Redies C. Molecular characterization and expression analysis of ADAM12 during chicken embryonic development. Dev Growth Differ. 2010 Dec;52(9):757-69.
Copyright© 2010 The Authors. Journal compilation © 2010 Japanese Society of Developmental Biologists.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001004391).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 29
stage 29
Mesonephros
Myotome
Notochord
Spinal Cord
drg, dorsal root ganglion; rp, roof plate
31-35
stage 35
stage 35
Gizzard
Leg Muscles
Mesonephros
od, oviduct
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3334

Mouse

EmageMGI:99218
EurexpressMGI:99218
MGI GXDMGI:99218

Frog

Xenbase958012

Fruit Fly

BDGP

Zebra Finch

ZEBrACDH4

Zebrafish

ZFINZDB-GENE-991207-1
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