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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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RDH10
retinol dehydrogenase 10

Gene

Official Symbol	RDH10
Official Full Name	retinol dehydrogenase 10
CGNC ID	11661
also known as	retinol dehydrogenase 10\|retinol dehydrogenase 10 (all-trans)
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic	Genbank
RNA	NM_001199459
Polypeptide	NP_001186388
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.2606

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	157506	ENSG00000121039		MIM:607599
Mouse	98711		All phenotypic alleles (5):Chemically induced(2) Targeted, knock-out(1) Targeted, other(2)	MGI:1924238
Xenopus	496504, 446860, 431995			944960
Zebrafish	562840, 378722	ENSDARG00000058730, ENSDARG00000012369	ZDB-GENE-070112-2242, ZDB-GENE-030909-7	ZFIN:ZDB-GENE-070112-2242, ZFIN:ZDB-GENE-030909-7

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	420183
Ensembl Gene
KEGG	gga:420183

Entry 1

GEISHA Id	RDH10.Reijntjes.2010	Data Source	Publication
Complete cDNA Template Probe	show `GGGTGCAGGATCAGAAAAGAAATTGAGCCTTTCCTTCCACCGTTGAAACCAGAATACTGTGTGAAGCAGGCTATGAGAG CTATCCTTACAGACCAGCCGATGATCTGCACACCTCGCCTCATGTATATGGTCACCTTCATGAAAAGTATTCTGCCCTT TGAAGCAGTTGTGTGCATGTACCGGTTTTTGGGAGCAGACAAGTGTATGTACCCCTTCATTGCTCAAAGGAAACAGGCT ACAAACAACAATGAAGCAAAAAATGGAATTTAACACTGGTTTGGATGGACTAACGTTTATAGGTGAATATGATGTTACC TGAGTGAATCGTGAAGTGCACTTGCATCTAAGAGATGCAAAAAGTCATCATCTTACTGTGGCATTCTCTTGGGTCCTCA ACCTGTGTACCTGTGT`
Citation	Reijntjes S, Zile MH, Maden M. The expression of Stra6 and Rdh10 in the avian embryo and their contribution to the generation of retinoid signatures. Int J Dev Biol. 2010;54(8-9):1267-75.
Copyright	© 2010 UBC Press
Comments	The cDNA template used to generate the probe was obtained by PCR as described in Reijntjes et al.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Early Mesoderm
Epiblast

band of mesoderm

7-12

stage 7

stage 8

stage 9

stage 10

Heart
Intermediate Mesoderm
Somites

endocardial tube

13-18

stage 14

stage 16

Eye
Heart
Intermediate Mesoderm
Somites

19-23

stage 19

stage 20

stage 21

stage 23

Cardiovascular
Eye
Hindgut
Limb Buds
Mesonephros
Neural Plate/Tube
Somites
Tail

coelomic epithelium
intersomitic segments
roof plate

Entry 2

GEISHA Id	RDH10.Smith.2018	Data Source	Publication
Complete cDNA Template Probe	show `GGGTGCAGGATCAGAAAAGAAATTGAGCCTTTCCTTCCACCGTTGAAACCAGAATACTGTGTGAAGCAGGCTATGAGAG CTATCCTTACAGACCAGCCGATGATCTGCACACCTCGCCTCATGTATATGGTCACCTTCATGAAAAGTATTCTGCCCTT TGAAGCAGTTGTGTGCATGTACCGGTTTTTGGGAGCAGACAAGTGTATGTACCCCTTCATTGCTCAAAGGAAACAGGCT ACAAACAACAATGAAGCAAAAAATGGAATTTAACACTGGTTTGGATGGACTAACATTTATAGGTGAATATGATGTTACC TGAGTGAATTGTGAAGTGCACTTGCATCTAAGAGATGCAAAAAGTCATCATCTTACTGTGGCATTCTCTTGGGTCCTCA ACCTGTGT`
Citation	Jonathan N Smith, Heather M Walker, Hannah Thompson, J Martin Collinson, Neil Vargesson, Lynda Erskine. Lens-regulated retinoic acid signalling controls expansion of the developing eye. Development. 2018 Oct 10;145(19):dev167171. DOI: 10.1242/dev.167171.
Copyright	Copyright © 2018. Published by The Company of Biologists Ltd.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Smith et al. 2018.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

stage 24

Eye
Retina

25-28

stage 26

stage 27

stage 28

Eye
Retina

all

Entry 3

GEISHA Id	RDH10.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show ACTGCCAACAGCGGGGCCGCGGGCGTGGGGGGACGGGGCAGACGGCGATCTCTTTGCCTGTGCTCCTTCGTTGAGTGTG GGGTGCGGGACCGAGCACGGGGCGTCCCGAGCGGCGGCGGGCGGAGCGGGGCAGCCCCGGCAGCGGGAGCTCCACCGGT ACCGGGCTGTCCCGGCGAGAACAGCGGCCCCAGGTGCGGAGCCAGGCGAAGGGAGGCTCCGCTCCGCGCCGTGCCCGCC GCTGTGGGCGGGGGTGAGGGCCGCCGGGCCGGGGGCGAGGGGCCGCCAGCATGAACATCCTGCTGGAGCTGTTCGTGGT CACCTTCCGAGTGCTGTGGGCGTTCGTGCTGGCCGCTGCCAAGTGGCTGGTGCGGCCCAAGGAGAAGAGCGTGGCGGGG CAGGTGTGCCTGATCACCGGGGCGGGCAGCGGCCTGGGCCGTCTCTTCGCCTTGGAGTTTGCCCGGCGCCGGGCGCTGC TGGTGCTGTGGGACATCAACACGCAGAGCAACGAGGAGACGGCGGGCATGGTGCGACATATCTACCGCGAGCTCGCCGA GGCTGCCCCCAAAGTAGCTGGAGACGGAGAGAAAGATGCGCTGCCCCATTGCAGCTTGCAGGTTTACACATACACCTGT GATGTGGGCAAAAGAGAAAATGTCTACACAACAGCGGAGAGGGTCCGCAAAGAGGTTGGAGAGGTTTCCGTCCTGGTTA ACAATGCTGGCGTGGTCTCCGGGCACCACCTTTTGGAGTGTCCTGATGAGCTGATTGAGAGGACCATGATGGTCAACTG TCACGCGCATTTCTGGACCACTAAAGCATTCCTTCCCAAGATGCTGGAAATGAATCATGGACACATTGTGACAGTTGCA AGTTCTTTGGGACTGTTCAGCACTGCTGGAGTAGAGGATTATTGTGCTAGCAAATTTGGAGCTGTAGGTTTTCACGAGT CTTTGAGCCATGAACTGAAAGCTGCTGAAAAGGATGGAATCAAAACAACTTTAGTCTGCCCTTATCTTGTAGATACAGG AATGTTCAGAGGGTGCAGGATCAGAAAAGAAATTGAGCCTTTCCTTCCACCGTTGAAACCAGAATACTGTGTGAAGCAG GCTATGAGAGCTATCCTTACAGACCAGCCGATGATCTGCACACCTCGCCTCATGTATATGGTCACCTTCATGAAAAGTA TTCTGCCCTTTGAAGCAGTTGTGTGCATGTACCGGTTTTTGGGAGCAGACAAGTGTATGTACCCCTTCATTGCTCAAAG GAAACAGGCTACAAACAACAATGAAGCAAAAAATGGAATTTAACACTGGTTTGGATGGACTAACATTTATAGGTGAATA TGATGTTACCTGAGTGAATTGTGAAGTGCACTTGCATCTAAGAGATGCAAAAAGTCATCATCTTACTGTGGCATTCTCT TGGGTCCTCAACCTGTGTATTGAACTCTAAAAATCAATGTTTTTTTATATACTGTAAATAAAACTGACTAGTGTACTTG GAAAATGTGATAGGTAAACAAGGTGAATTTACAATGTAGCCGCCACCATTGTCCTTTTAGAATCTCACTGTATGTACAG TAAACTAGTCATACTACTTCTTGTAGGGATGCACTGTGTGATATCTCTTCCTCAGCTTACCAAGATTTATAAGAGCTGT CTACAACCAGAAGATGCGATGTCTCAGAAGTTGTTCGTTTTTCCCTATGGTGTTTGGTGAGGGGCGGGGAGGGAAATCT TGATATTTAAGCTACTGCTTATGACCTTTTAGCAAATTCAAGGACAGTTTCTGACTGCATCTCTTTGCTTGTCAACCCA AGCTCTCTACAGGACACATGGCCGAATTGTGGTGTAATTCTCTTTTGTACCAATTGTGTGTATTCTATTTAAACAAAGA TAAAAATTTTCAAAATCTCTGTAGATTCAAAGGCAAGTGAATGTATCAGAAATACAGTCAAACTTGTACTGGCATCTGG TTTTCTAGGAATGCGGTCAGTGATTTAAATCAACTTCTTTTCGAGTCACTTGATTTGAAATATGTTCTCTCCTTTTTCC CTCTATGTCAGAGTCCAGTCTGCTGTTATGGACTATGTTTCTTTTCGTAGTACTTATTTCTGACAGAGTTCTCCCACCC CCTGAGGAAGCTGTTGTACTAAATTTCTGTAACTGGACTTGTGCCTAAAAGACAAAGCAACTCAGCTGAGATACAAACT GTTTATGTAACTGCTGGTCATATGCCAACTATTAGCAAATGAAAAATAGAGTAACGCCTGATGCAACTTTACATGTGGA GTATGGAAGGGTGTAAAGATTTTTTTGAGTTGTACTCACATTGTAGAAGAGCAAACGACATTTTTACAGTATTTTTTGT AAAGAGAACAATTTTGTGCCTTGAATTTGGTAATCTGTATTAGTGAAGCATTGTAAAAGTGAACTTCTACCTCTGTATC TTAATGTATACCATCCACTTGTAAACTACTATTGGACAAATTGTTATTACTTTTTTTAGAATGTCTTGTTACATAGTGA CCAATGCCTGTGGTTATTAAAGTGAGCCACCTTTTCCTTAAA
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001199459 ).