GEISHA - A Chicken Embryo Gene Expression Database
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RFNG
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

Gene
Official SymbolRFNG
Official Full NameRFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
CGNC ID2048
also known asbeta-1,3-N-acetylglucosaminyltransferase radical fringe|O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase, radical fringe, O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase, Beta-1,3-N-acetylglucosaminyltransferase
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204947
PolypeptideNP_990278
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4783
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly40314FBgn0011591
Human5986ENSG00000169733MIM:602578
Mouse19719ENSMUSG00000025158All phenotypic alleles (4):Targeted, knock-out(3) Targeted, other(1) MGI:894275
Xenopus100486895, 394282483388
Zebrafish414848ENSDARG00000019746ZDB-GENE-030131-5418ZFIN:ZDB-GENE-030131-5418
Gene Ontology
Molecular Functionmetal ion binding, O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity
Biological Processcell differentiation, nervous system development, pattern specification process
Cellular Componentintegral component of Golgi membrane
Links to other databases
Entrez Gene395789
Ensembl GeneENSGALG00000002841
KEGGgga:395789

Entry 1

GEISHA IdRFNG.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerACAAAAGCAGGAGTCCAACGC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGAGGAGGCTGAAAACAAGAACCCcDNA Template Length921
Forward cDNA Template Probeshow
AATGGTTTTTTAAAAGTGTTTATATAGATACCAGTAATCTCCAGAGCTATGAATGACGTATCACTGAACCACAGGGACA
TCTCAGTTCTATTGAGCAGAACACCTNATGGAGAGGTAGAACATCCCACCACCTACCCTGCCACGAGCCCTCCACGCTC
TGTAACAGGCTGTCAGCATCACAGATGTTCCTGTTTTGAAACAACCACTGTGCTAGGTGGACTTTGATCCGAGTGCNTG
CAGCACTCTTATTCCTGTGCCTCATGGTCAAAGCACTGCCTTAGCAGATAAAGGAAAAGAAATTTAAGAACAAGCTGCT
GGATCGTAGCGAGTAGTCAGCTTGTTTGCTCCTCTATAAAATTAAATTAAATCATGCAAAGAGGACAATGTATCCAGTT
GTTGAAAGGTTTGCTTCAAAAACAGAAAGCANAGAATATTATATTACAGGAGGCTGACACCTACACTGCAATTCATACT
TGAATATGCTGCAGGTGTTTGCCTACATGGTACCACTTTTCAAATGGGAAGAAGTTAAGCAACTAGCTGAAATACACCG
CTCAGCACAGCTGATAGAAATCTGAAACTTGCTAGGTCCGAATTCTTGCCATTAGTCATAGTTTCAGGTTATACAACAT
CATGCTATTCTCCACTTAATTCAGCCTCAGCCTCTAGTACTAAACCTGCAAGTATTTTCTGAAGAGTTTGAGAGTAAAC
AGTGGTTTTACAAAATCATTTTGTATGCTGTTCTTCACATCAGGTATAGATTGCACAAAGGCAAAGTTGGAAGTAACAA
AACTAAACATAGAGAGTCTCAATTCTTCCACTTTCAAAACTAAGCTTATTTAATTTATAATGCAGCAGCAGGTGACATT
GCTACAGCGTTGGATC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 10
Unlabeled
No staining stages 3-7
13-18
stage 16
Unlabeled
 
19-24
stage 21
stage 22
Unlabeled
 
25-26
stage 26
Unlabeled
 

Entry 2

GEISHA Idr-Fng.Ha.2003Data SourcePublication
Complete cDNA Template Probeshow
GGAGCCGTCTGGTGGAGGCCGCGGGGGAAACCGTCCGCGGGGCTCCCGGGGGCCATGAGGCTGGCCGCGCAGCGCGGCG
GGGGCCGGTGGGGCCGCAACATGAGCAGCTCCTGCCTGGGGCTCCGCAGAGCCTGCTTCCTGCTGTCCGTCACCGCCGC
CGCCGTTCTCCTGCTGCTGCTGCCCCGGGGACAGCCCCCCGCCGCGCCCCGCCGCCGCCCGCCGCCCGCCGGGCCCAGC
AGGCCCTCCCCGAAGCGGGAGGCGCGGCCCGCGGGGAGCGACGTGCCCGGGGACCGCGGCGGCGGCTCGGGAGCCGCGG
GGGGCGGCCGGGGCGTCGCCGGTAGCCCGTGGCCTTCGCGGAGGGTCCGCATGGGGCCTCCCGGCGGCTCGGCCAAGGA
GAGCCTGGAGCTAAAAGACATCTTTATTGCGGTGAAAACGACGAGGAAGTATCACAAGACGCGGCTGGAGCTGCTGTTC
CAAACCTGGATCTCCCGGGCGAGAGGACAGACATTCATATTCACAGACTGGGAGGATCGAGAGCTGCGCCTGAAAGCAG
GGGATCATATGATCAACACTAACTGTTCTGCTGTCCACACCCGGCAAGCTCTGTGCTGCAAGATGTCTGTGGAATATGA
TAAATTCCTAGAATCTGGACAAAAGTGGTTTTGCCATGTGGACGATGACAACTATGTGAATCCACGGACTCTCTTGCGT
CTCTTATCTGCCTTCTCACCCAGCCAGGATGTCTATGTGGGACGACCGAGTCTGGACCATCCCATTGAAGCAGCTGACC
ATGTCCAAAGCGATGGATCAAAGACAAGCGTGAAATTCTGGTTTGCCACAGGTGGAGCAGGGTTCTGTATCAGCAGAGG
TCTTGCTCTGAAGATGAGTCCCTGGGCCAGCCTGGGTAATTTCATCAGTACTGCAGAAAGAGTGCGTCTTCCTGATGAC
TGCACCATTGGCTACATCATTGAAGGGCTGCTGGAAGTAAAGCTGCTGCACAGCCCATTGTTCCATTCCCATCTGGAAA
ATCTGCAGAGACTACAAGGAGAGTCTGTGCTGCAACAGGTAACCCTAAGTTATGGGGACCCTGAGAACAAACACAATGT
TGTGAGTGTGGGAGGAGTGTTTGGACTTCAGCAAGACCCAACCAGATTTAAATCTGTCCATTGTCTTCTTTACCCTGAC
ACTATTTGGTGCCCCAATAAGAAGATGTCATAACTTTTGACCAGTCATTGACACCTTTATCCTACCTACTTTGCGTAAA
GCAAGAGTTGTGATGGGCTTTTTTTCTTCTGGGACACAAACAGACATATCTACAAAGGAGGTAGACTTTGTACAGAAGC
AAGACTGGCTAATTATGGCAAGAAGGCATTTGTTCAGCTGCAGCCTGGGACATTGCCAAGAAGAAAATCTTCTATTTCT
TGTTCTTTGGTCCAGTGGCTCTTCATGTGATGGCTCCAGTCATAGCTGTACAAGTCACTTTATGCTTTCATCTGATGTC
ACATGAGCCCTGCCTATCATGTGAATCTGCGCTCAGATACATCCTAGGCAAATGCAGTACTTAGAATGATGGCATTCTT
ACTACTGTTAGCAGCTTTCAGAGGCCATTGTCTTGAAGCTGGAATGTGTAAGCAGACTGCAGTCCCCATGGTGATGAGG
GGGATGAAGTTTTTGCTTGTCTTTTTTGCGAACAGGACTTAAGAACTTCTGTGGCCTGCCATATTATACCTCCTCCACC
TGTGAGCTGAAACACAGTCTGTTTGTAAACACCAGAAGTCCAGGAATTGCTAGGGTAGACAAGGGTGAAAGCCTTTGTC
ATGGGAAAAACCCTGTGTAAGGGTAAACTGACTCAGGACTGCGCAAGAGTTGCTTACAGGGCACATTCTTCCCAGCAGT
CTTTGTGTACCTCCCATGGAGGTGATTGTCAGACTTGGCACTCTTACCACTGAATGGCAGTGGCTGTTGATTATGATGG
TGGTCTGCTAGGTCCAAGACTATTCCCTTGGTATTTGATACTGAAGATGTATTTGCCAGACTAGTTGGTAACTGTTTCT
CCTCCTTTGCCCTCAGCAGGTTATATGAGCTAGAGCATGCCCATTGGCTGATGAAACACCCTGTTTTTGAAGCTGTGCT
GTATCCTTCACTGCCTGCGAGGGAGGAGGAATGCTAGATAGCTGTAGTGCTGAGAAAGGTTTTGATGGTATCATTTCAG
GTCTCTTAATTGTGTGCTTGTGGTTGCCCCACTTCAGCTTCTTAATGTAATCTTTTGAGACCAGTGTTTATTTTTACTC
TACATCTTAATGTTTCAGAAAGTAATTCTGGCACTTGGTAAAAGGAAACTGGATGCTGATACAAAAGCAGGAGTCCAAC
GCTGTAGCAATGTCACCTGCTGCTGCATTATAAATTAAATAAGCTTAGTTTTGAAAGTGGAAGAATTGAGACTCTCTAT
GTTTAGTTTTGTTACTTCCAACTTTGCCTTTGTGCAATCTATACCTGATGTGAAGAACAGCATACAAAATGATTTTGTA
AAACCACTGTTTACTCTCAAACTCTTCAGAAAATACTTGCAGGTTTAGTACTAGAGGCTGAGGCTGAATTAAGTGGAGA
ATAGCATGATGTTGTATAACCTGAAACTATGACTAATGGCGAGAATTCGGACCGAGCAAGTTTCAGATTTCTATCAGCT
GTGCTGAGCGGTGTATTTCAGCTAGTTGCTTAACTTCTTCCCATTTGAAAAGTGGTACCATGTAGGCAAACACCTGCAG
CATATTCAAGTATGAAGTGCAGTGTAGGTGTCAGCCTCCTGTAATATAATATTCTCTGCTTTCTGTTTTTGAAGCAAAC
CTTTCAACAACTGGATACGTTGTCCTCTTTGCATGATTTAATTTAATTTTATAGAGGAGCAAACAAGCTGACTACTCGC
TACGATCCAGCAGCTTGTTCTTAAATTTCTTTTCCTTTATCTGCTAAGGCAGTGCTTTGACCATGAGGCACAGGAATAA
GAGTGCTGCAAGCACTCGGATCAAAGTCCACCTAGCACAGTGGTTGTTTCAAAACAGGAACATCTGTGATGCTGACAGC
CTGTTACAGAGCGTGGAGGGCTCGTGGCAGGGTAGGTGGTGGGATGTTCTACCTCTCCATCAGGTGGTCTGCTCAATAG
AACTGAGATGTCCTGTGGTTCAGTGATACGTCATTCATAGCTCTGGAGATTACTGGTATCTATATAAACACTTTTTAAA
AAACATTTGGTGGGTTCTTGTTTTCAGCCTCCTTGTAGCAAGGAGTTGTGAAGCTGCATAAGCACTTGATGAGATATCA
TCCTCAGTGATCTCTGAATTCTGCTGGAGCTTTTCTTCCTCTCCTCTTAAGAGCAGCCTCCTGTCAGATACTATGGACA
GCACAAGCTGGGTAGTGATTATGTGGCAAACTGCAGTTCAAAGATGACAACACTTCATACTGATGGCAGCAAAACTGCG
TAGAAGTCCCATACTACAGTCATTTCCCACCCTAAATGGAGTTTGCTGCCTCCTTGTCATGCCTAATGCTGGTAGGGTG
CTTATCAAGCTGAAAAAGGAACGTATTCTTCTGTAAAGCAATGCAAAAAAGCTTCTTTTAAGGTTTCTCTTGTTCACAA
TACAGTAGGCTCTGTACATATACTGAGATGCAGCTTCTTAAACTACTGTCCCATACGTAAAACAATTCTATGAAATAAA
TATTTAAGTATGTCAAAA
CitationHa AS, Riddle RD. cBlimp-1 expression in chick limb bud development. Gene Expr Patterns. 2003 Jun;3(3):297-300.
CopyrightReprinted from Gene Expr Patterns, Volume 3, Issue 3, Alice S. Ha and Robert D. Riddle, cBlimp-1 expression in chick limb bud development, Pages 297-300, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier Science B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204947).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-20
stage 20
Leg AER
Wing AER
 

Entry 3

GEISHA IdRFNG.Tossell.2011Data SourcePublication
Complete cDNA Template Probeshow
GGAGCCGTCTGGTGGAGGCCGCGGGGGAAACCGTCCGCGGGGCTCCCGGGGGCCATGAGGCTGGCCGCGCAGCGCGGCG
GGGGCCGGTGGGGCCGCAACATGAGCAGCTCCTGCCTGGGGCTCCGCAGAGCCTGCTTCCTGCTGTCCGTCACCGCCGC
CGCCGTTCTCCTGCTGCTGCTGCCCCGGGGACAGCCCCCCGCCGCGCCCCGCCGCCGCCCGCCGCCCGCCGGGCCCAGC
AGGCCCTCCCCGAAGCGGGAGGCGCGGCCCGCGGGGAGCGACGTGCCCGGGGACCGCGGCGGCGGCTCGGGAGCCGCGG
GGGGCGGCCGGGGCGTCGCCGGTAGCCCGTGGCCTTCGCGGAGGGTCCGCATGGGGCCTCCCGGCGGCTCGGCCAAGGA
GAGCCTGGAGCTAAAAGACATCTTTATTGCGGTGAAAACGACGAGGAAGTATCACAAGACGCGGCTGGAGCTGCTGTTC
CAAACCTGGATCTCCCGGGCGAGAGGACAGACATTCATATTCACAGACTGGGAGGATCGAGAGCTGCGCCTGAAAGCAG
GGGATCATATGATCAACACTAACTGTTCTGCTGTCCACACCCGGCAAGCTCTGTGCTGCAAGATGTCTGTGGAATATGA
TAAATTCCTAGAATCTGGACAAAAGTGGTTTTGCCATGTGGACGATGACAACTATGTGAATCCACGGACTCTCTTGCGT
CTCTTATCTGCCTTCTCACCCAGCCAGGATGTCTATGTGGGACGACCGAGTCTGGACCATCCCATTGAAGCAGCTGACC
ATGTCCAAAGCGATGGATCAAAGACAAGCGTGAAATTCTGGTTTGCCACAGGTGGAGCAGGGTTCTGTATCAGCAGAGG
TCTTGCTCTGAAGATGAGTCCCTGGGCCAGCCTGGGTAATTTCATCAGTACTGCAGAAAGAGTGCGTCTTCCTGATGAC
TGCACCATTGGCTACATCATTGAAGGGCTGCTGGAAGTAAAGCTGCTGCACAGCCCATTGTTCCATTCCCATCTGGAAA
ATCTGCAGAGACTACAAGGAGAGTCTGTGCTGCAACAGGTAACCCTAAGTTATGGGGACCCTGAGAACAAACACAATGT
TGTGAGTGTGGGAGGAGTGTTTGGACTTCAGCAAGACCCAACCAGATTTAAATCTGTCCATTGTCTTCTTTACCCTGAC
ACTATTTGGTGCCCCAATAAGAAGATGTCATAACTTTTGACCAGTCATTGACACCTTTATCCTACCTACTTTGCGTAAA
GCAAGAGTTGTGATGGGCTTTTTTTCTTCTGGGACACAAACAGACATATCTACAAAGGAGGTAGACTTTGTACAGAAGC
AAGACTGGCTAATTATGGCAAGAAGGCATTTGTTCAGCTGCAGCCTGGGACATTGCCAAGAAGAAAATCTTCTATTTCT
TGTTCTTTGGTCCAGTGGCTCTTCATGTGATGGCTCCAGTCATAGCTGTACAAGTCACTTTATGCTTTCATCTGATGTC
ACATGAGCCCTGCCTATCATGTGAATCTGCGCTCAGATACATCCTAGGCAAATGCAGTACTTAGAATGATGGCATTCTT
ACTACTGTTAGCAGCTTTCAGAGGCCATTGTCTTGAAGCTGGAATGTGTAAGCAGACTGCAGTCCCCATGGTGATGAGG
GGGATGAAGTTTTTGCTTGTCTTTTTTGCGAACAGGACTTAAGAACTTCTGTGGCCTGCCATATTATACCTCCTCCACC
TGTGAGCTGAAACACAGTCTGTTTGTAAACACCAGAAGTCCAGGAATTGCTAGGGTAGACAAGGGTGAAAGCCTTTGTC
ATGGGAAAAACCCTGTGTAAGGGTAAACTGACTCAGGACTGCGCAAGAGTTGCTTACAGGGCACATTCTTCCCAGCAGT
CTTTGTGTACCTCCCATGGAGGTGATTGTCAGACTTGGCACTCTTACCACTGAATGGCAGTGGCTGTTGATTATGATGG
TGGTCTGCTAGGTCCAAGACTATTCCCTTGGTATTTGATACTGAAGATGTATTTGCCAGACTAGTTGGTAACTGTTTCT
CCTCCTTTGCCCTCAGCAGGTTATATGAGCTAGAGCATGCCCATTGGCTGATGAAACACCCTGTTTTTGAAGCTGTGCT
GTATCCTTCACTGCCTGCGAGGGAGGAGGAATGCTAGATAGCTGTAGTGCTGAGAAAGGTTTTGATGGTATCATTTCAG
GTCTCTTAATTGTGTGCTTGTGGTTGCCCCACTTCAGCTTCTTAATGTAATCTTTTGAGACCAGTGTTTATTTTTACTC
TACATCTTAATGTTTCAGAAAGTAATTCTGGCACTTGGTAAAAGGAAACTGGATGCTGATACAAAAGCAGGAGTCCAAC
GCTGTAGCAATGTCACCTGCTGCTGCATTATAAATTAAATAAGCTTAGTTTTGAAAGTGGAAGAATTGAGACTCTCTAT
GTTTAGTTTTGTTACTTCCAACTTTGCCTTTGTGCAATCTATACCTGATGTGAAGAACAGCATACAAAATGATTTTGTA
AAACCACTGTTTACTCTCAAACTCTTCAGAAAATACTTGCAGGTTTAGTACTAGAGGCTGAGGCTGAATTAAGTGGAGA
ATAGCATGATGTTGTATAACCTGAAACTATGACTAATGGCGAGAATTCGGACCGAGCAAGTTTCAGATTTCTATCAGCT
GTGCTGAGCGGTGTATTTCAGCTAGTTGCTTAACTTCTTCCCATTTGAAAAGTGGTACCATGTAGGCAAACACCTGCAG
CATATTCAAGTATGAAGTGCAGTGTAGGTGTCAGCCTCCTGTAATATAATATTCTCTGCTTTCTGTTTTTGAAGCAAAC
CTTTCAACAACTGGATACGTTGTCCTCTTTGCATGATTTAATTTAATTTTATAGAGGAGCAAACAAGCTGACTACTCGC
TACGATCCAGCAGCTTGTTCTTAAATTTCTTTTCCTTTATCTGCTAAGGCAGTGCTTTGACCATGAGGCACAGGAATAA
GAGTGCTGCAAGCACTCGGATCAAAGTCCACCTAGCACAGTGGTTGTTTCAAAACAGGAACATCTGTGATGCTGACAGC
CTGTTACAGAGCGTGGAGGGCTCGTGGCAGGGTAGGTGGTGGGATGTTCTACCTCTCCATCAGGTGGTCTGCTCAATAG
AACTGAGATGTCCTGTGGTTCAGTGATACGTCATTCATAGCTCTGGAGATTACTGGTATCTATATAAACACTTTTTAAA
AAACATTTGGTGGGTTCTTGTTTTCAGCCTCCTTGTAGCAAGGAGTTGTGAAGCTGCATAAGCACTTGATGAGATATCA
TCCTCAGTGATCTCTGAATTCTGCTGGAGCTTTTCTTCCTCTCCTCTTAAGAGCAGCCTCCTGTCAGATACTATGGACA
GCACAAGCTGGGTAGTGATTATGTGGCAAACTGCAGTTCAAAGATGACAACACTTCATACTGATGGCAGCAAAACTGCG
TAGAAGTCCCATACTACAGTCATTTCCCACCCTAAATGGAGTTTGCTGCCTCCTTGTCATGCCTAATGCTGGTAGGGTG
CTTATCAAGCTGAAAAAGGAACGTATTCTTCTGTAAAGCAATGCAAAAAAGCTTCTTTTAAGGTTTCTCTTGTTCACAA
TACAGTAGGCTCTGTACATATACTGAGATGCAGCTTCTTAAACTACTGTCCCATACGTAAAACAATTCTATGAAATAAA
TATTTAAGTATGTCAAAA
CitationTossell K, Kiecker C, Wizenmann A, Lang E, Irving C. Notch signalling stabilises boundary formation at the midbrain-hindbrain organiser. Development. 2011 Sep;138(17):3745-57. Epub 2011 Jul 27.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204947.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Neural Plate/Tube
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4783

Mouse

EmageMGI:894275
EurexpressMGI:894275
MGI GXDMGI:894275

Frog

Xenbase483388

Fruit Fly

BDGPFBgn0011591

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-5418
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