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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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RFX3
regulatory factor X3

Gene

Official Symbol	RFX3
Official Full Name	regulatory factor X3
CGNC ID	53056
also known as	transcription factor RFX3\|regulatory factor X, 3 (influences HLA class II expression)
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003642990
Polypeptide	XP_003643038
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	427351
Ensembl Gene	ENSGALG00000010179
KEGG	gga:427351

Entry 1

GEISHA Id	RFX3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GTTCAGTATGTGGAAGGAAGCGAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGAGGTGGAGTAGAGGGAGAATAGCG	cDNA Template Length	1023
Forward cDNA Template Probe	show CCCANAAAGGTTTGCCACAACTTTTCTATCAGGGGCTGGAATTGAAGAATTCACTACCACATCCAGAATTGCCTCACAG TGCTCTCGATAAAGACTCTGCAGTGATTTGATGTCCTCAAAGGTAGTACCATCTGGTAGAGAAGATATTTCAACTTCAC CAAACTCTGGAAGTACTCGAGACGCATCTAAAAACTGCTGATGATGTTGACTTTGGGCAATTACAGTTTGTTCAACAGA TGTGCCTGTCTGTTGACCACTTCCTGTGAAGCCATCTGCAACTCCATCCACTTTCTGCATAGGCTTATACCTCTGTTTC TGCTGCATGGGCTGCTGTCTCATAGCCATATATTGCATGTCCTCTTGTAGTCGATTAAGAGGAGAATCTGGCTTGACAC GAATCCCATAGTAATGGTATTTGGAGTTCCCCCTAGTTCCAAGTCTTCTTGTCCGTAACCCCATGAAGATTGACCGTAT GAGTTTTCCAAAGGAGGCTGCATTGACTGGATCCAACTTGTGCTCCTGACAGTGTCGTAAGTAATGGTTGTAAAGGGTA CTTCTAGGGAGGCTCACTCCTTCTGCAGTTTCATAATTGTCCAAAAGCCACTGAAGATGGCTGTTGAGAAGAGAGCTTC TGTGAGTGGACAGACCATCAGACTTTTGCAGTGTCTCAATCGCCATTTCAATTGTAGCTGGGGAAGTCCGTGTTGTATG AGTCACTGAATGACCAGAATTTTCCATTGAATTGCCAATCAAATAGGTCCCTCCTGAGCTGCTAATGAGTTGTCCTCCT GTGACACCCATCTGAATCCCTCCAGTGCCCACCATGCTATGANAGGAGACCACTGTTGTCACTTGCGCCGAACTTCCTT GAGTATCAAAATAATTTCCCCCAGTGTTTTGGCTGTACATCTGGGTNTCTGTGTAAGGATAAATTTGTTGATCGGAATA NCTCCATTANTGTAAACTGTGTCNCTTCCTTCC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Unlabeled

7-12

stage 8

stage 9

stage 10

Anterior Intestinal Portal
Extraembryonic
Forebrain
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Primitive Streak
Somites

13-18

stage 17

stage 18

Neural Plate/Tube
Spinal Cord

19-24

stage 22

stage 23

stage 24

Endoderm
Eye
Gut
Leg Mesenchyme
Neural Plate/Tube
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 2

GEISHA Id	RFX3.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCGGCTCGAGCACTCACAGAAGCTCTCTTCTCAACAGCCATCTTCAGTGGCTTTTGGACAATTATGAAACTGCAGAAGG AGTGAGCCTCCCTAGAAGTACCCTTTACAACCATTACTTACGACACTGTCAGGAGCACAAGTTGGATCCAGTCAATGCA GCCTCCTTTGGAAAACTCATACGGTCAATCTTCATGGGGTTACGGACAAGAAGACTTGGAACTAGGGGGAACCCCAAAT ACCATTACTATGGGATTCGTGTCAAGCCAGATTCTCCTCTTAATCGACTACAAGAGGACATGCAATATATGGCTATGAG ACAGCAGCCCATGCAGCAGAAACAGAGGTATAAGCCTATGCAGAAAGTGGATGGAGTTGCAGATGGCTTCACAGGAAGT GGTCAACAGACAGGCACATCTGTTGAACAAACTGTAATTGCCCAAAGTCAACATCATCAGCAGTTTTTAGATGCGTCTC GAGTACTTCCAGAGTTTGGTGAAGTTGAAATATCTTCTCTACCAGATGGTACTACCTTTGAGGACATCAAATCACTGCA GAGTCTTTATCGAGAGCACTGTGAGGCAATTCTGGATGTGGTAGTGAATCTTCAATTCAGCCTGATAGAAAAGTTGTGG CAAACTTTCTGGCGCTATTCTCCCTCTACTCCACCTGATGGTACTACTGTTAATGAACCAAGCAATCTGAGTGAAATAG AAAGT
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.