GEISHA - A Chicken Embryo Gene Expression Database
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PTPRU
protein tyrosine phosphatase, receptor type U

Gene
Official SymbolPTPRU
Official Full Nameprotein tyrosine phosphatase, receptor type U
CGNC ID996
also known asreceptor-type tyrosine-protein phosphatase U|R-PTP-U|R-PTP-psi|cRPTPPSI|phosphoprotein phosphatase|receptor tyrosine phosphatase|receptor-type protein-tyrosine phosphatase psi, protein tyrosine phosphatase, receptor type, U , receptor tyrosine phosphatase Psi
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204492
PolypeptideNP_989823
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.43624
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human10076ENSG00000060656MIM:602454
Mouse19273ENSMUSG00000028909All phenotypic alleles (2):Targeted, other(2) MGI:1321151
Xenopus733850922687
Zebrafish100331611, 335096, 563584ENSDARG00000078090, ENSDARG00000092638ZDB-GENE-030131-7036, ZDB-GENE-060503-232ZFIN:ZDB-GENE-030131-7036, ZFIN:ZDB-GENE-060503-232
Gene Ontology
Molecular Functionprotein tyrosine phosphatase activity
Biological Processcell adhesion, cell differentiation
Cellular Componentcell junction, integral component of membrane, plasma membrane
Links to other databases
Entrez Gene395153
Ensembl Gene
KEGGgga:395153

Entry 1

GEISHA IdRPTPΨ.Aerne.2003Data SourcePublication
Complete cDNA Template Probeshow
CGTTTCTTTCTTCTTTTCTTCGCCCTCGCACCATGCGCAGCGCCCGGGCGCTGCTGCTCGCCCTCGCCCTGCGGGTGTG
CGCGTTGGACAGCGAGACGCCCTCGGCGGGCTGCACCTTCGAGGAGGACGACGACCTGAACCAGTGTGAGTACAGCCAG
GGTGAGGATGACGACTTCGGGTGGGAGTTGGTCCGCAGCTACATGATGCCACACCTGACGGCTGACCTGCCCCACGGCT
CCTACCTGATGGTGAACGCCTCGCAGCACGCCGCTGGCCAGAGGGCCCACCTGCTCTTCCAGGCGCTGAGCGAGAACGA
CACCCACTGCCTGCAGTTCAGCTACTTCATGTACAGCCGTGATGGTCACAGCCCCGGCACCCTCAGCGCCTACGTGCGG
GTGATGGGGGGCCCGGTGGGCAGTGCGGTCTGGAATGCCTCAGGCTCCCACGGCCGCCAGTGGCACCAGGCTGAGCTGG
CCGTCAGCTTGTTCTGGCCCAGCGAGTACCAGGTCCTCTTCGAGGCGGTGATCTCCAGCGAGCGCCGGGGCTACCTTGG
CTTGGATGACATCTTGCTCTTGAATTATCCATGCTCGAAAGCCCCTCACTTCTCCCGCCTGGGTGACGTGGAGGTGAAT
GCGGGGCAAAATGCCACCTTCCAGTGTGTGGCTGCTGGCAAGGCTGCCGAGGCAGAGCGCTTCCTCATGCAGAGGCAGA
GTGGCGAAGTGGTCCCCGCTGCCTCCGTGAAGCACATCAGCCACCGGCGCTTCCTGGCCACCTTCCAGCTGGACGAGGT
GTCCAAAGGCGAGCAGGACCTGTACCGCTGTGTCACCCAGTCCAGCCGTGGCTCAGGGGTCTCCAACTTTGCTGAGCTC
ATTGTGAAAGAGCCCCCAACACCCATCGCACCCCCCCAGCTGCTGCGGGCTGGCTCCACCTACCTCATCATCCAGCTCA
ACACCAACTCCATCATCGGCGACGGCCCCATCGTGCGCAAGGAGATAGAGTACCGCATGACCTCGGGGCCATGGTCAGA
GGTGCACGCTGTCAACATGCAGACCTACAAGCTCTGGCACCTGGATCCTGACACAGAGTACGAGATCAGCGTCCTGCTG
ACGCGTCCCGGTGAAGGGGGCACAGGCAAACCGGGACCCCCCCTCATCAGCCGCACCAAGTGTGCAGAGCCCATGCGGG
CCCCCAAAGGCCTGGCTTTCTCCGAGATCCAATCCAGGCAGCTGACACTGCAGTGGGAACCGCTGGGCTACAACCTGAC
CCGCTGCCACACCTACAGCGTCTCGCTGTGCTACCGCTACCTGGTGGGCAGCGGCCTCAACCAGACCTTCCGCGAGTGC
GCCAAGATGGAGCGCAACGCCAACCGCTACACCATCAAAAACCTGCTGCCCTACAGGAACATCCACGTCAAGCTCATCC
TCTCCAACCCCGAGGGCCGCAAGGAGGGCAAGGAGGTGACGTTCCAGACGGATGAGGACGTGCCTGGTGGCATCGCCTC
TGAGTCACTCACCTTCACCCCTCTGGAGGACATGATCTTTCTGAAGTGGGAGGAACCGGTGGAGCCCAATGGCCTCATC
ACGCAGTACGAGATCAGCTACCAAAGCATTGAGTCCTCTGACCCAGCAGTCAACGTTCCCGGCCCGCGACGCACCGTCT
CCAAGCTGCGCAATGAGACGTACCACGTCTTCTCCAACCTGCACCCTGGCACCACCTACCTCTTCTCAGTGCGTGCCCG
CACAGGCAAGGGCTTTGGCCAGACAGCGCTCACAGAGATCACCACCAACATATCTGCTCCCACCTTCGACTATGGGGAT
ATGCCATCACCTCTGGGCGAGTCAGAGAGCACAATCACGGTGCTGCTGCGGCCGGCGCAGGGCCGGGGGGCTCCCATCA
GTACCTACCAGGTCATCGTGGAGGAGGACCGGCCCAAGAGGATCAAGCGGGAGCTGGGTGGGCAGGAGTGCTTCCCGGT
GCCACTGACGTTTGATGATGCCATGTCTCGCGGCTCTGTGCACTATTTTGGGGCTGAGCTGCCTGCCAGCAGCCTCACT
GAAGCCAAGCCCTTCACTGTAGGGGACAACCAGACCTACAGTGGCTACTGGAACCCGCCACTGGAGCCCAAGAAGGCCT
ATCTCATCTACTTTCAGGCCATGAGCAACCTTAAAGGGGAAACCCGGCTCAACTGTATCCGCATTGCCCGCAAAGCTGC
CTGCAAAGAGAGCAAACGGCCTCTGGAGGTGTCTCAGCACTCGGAGGAGATGGGGCTGATCCTGGGAATCTGTGCTGGT
GGGCTCGTCGTCCTCATTATCCTGCTGGGAGCCATCATTGTTGTCATTCGGAAAGGCAAACCTGTCAACATGACCAAAG
CAACAATTAATTACCGCCACGAGAAGACACACATGATGAGTGCCATCGACCGGAGCTTCACGGACCAGAGCACGCTGCA
GGAGGATGAGAGGCTGGGGCTGTCCTTCATGGACACCCACAACTACAGCAACCGTGGTGACCAGCGCAGCAGTGTGGTC
AATGAGTCCAGCAGCCTGCTGGGGGGATCTCCTCGCCGCCAGTGTGGCCGCAAAGGGTCCCCGTATCACACTGGGCAGC
TGCACCCCGCCGTGCGCGTAGCAGATCTCCTCCAACACATCAACCAGATGAAGACAGCAGAAGGCTACGGCTTCAAGCA
GGAGTATGAGAGCTTCTTTGAAGGCTGGGATGCTTCAAAGAAGAAAGACAAGACCAAAGGGAGACAGGATCACGTGTCG
ACGTATGACCGCCACCGTGTGAAGCTCCATCCACTGCTGGGCGATCCCAACTCGGATTACATCAACGCCAACTACATTG
ATGGTTATCACAGGTCCAACCACTTCATCGCCACCCAAGGTCCTAAGCAGGAGATGGTGTACGACTTCTGGCGCATGGT
GTGGCAGGAGCACTGTTCCAGCATCGTGATGATAACCAAGCTGGTGGAAGTGGGCCGGGTGAAATGCTCCAAATATTGG
CCGGATGACTCGGAGATGTATGGGGACATCAAGATCACCTTGGTGAAGTCAGAGATGCTGGCAGAGTACGCCGTGCGGA
CCTTTGCTCTCGAGAGGCGAGGTTACTCAGCCCGGCACGAAGTGAAGCAGTTCCACTTCACATCCTGGCCTGAGCACGG
CGTCCCCTACCACGCCACGGGGCTGCTGGCCTTCATCCGCCGTGTGAAGGCATCCACACCACCCGATGCTGGCCCCATC
GTCATCCACTGCAGTGCTGGCACGGGGAGGACCGGCTGCTACATCGTTCTGGATGTTATGCTGGACATGGCCGAGTGTG
AGGGTGTTGTGGACATCTACAACTGTGTGAAGACGCTGTGCTCACGGAGGATCAACATGATACAGACAGAGGAGCAGTA
CATCTTCATCCACGATGCCATCCTGGAAGCCTGCCTGTGTGGTGAAACCAGCATCCCTGCCAGCGAGTTCAAGCCCACC
TACAAGGAGATGGTGAGGATTGAGCCGCAGAGCAATTCCTCACAGCTGCGGGAGGAGTTCCAGACCTTGAACTCGGTGA
CTCCCCACCTGGATGTGGAAGAGTGCAGCATCGCCCTCCTGCCCCGCAACCGGGAGAGGAACCGCAGCATGGACGTCCT
GCCGCCGGACCGATGCCTTCCCTTCCTCATCTCCGTGGATGGAGACAGCAACAACTACATCAACGCGGCCTTAACCGAT
AGCTACACTAAGAGTGCTGCCTTCATTGTCACCCTGCACCCGCTGCAGAACACCACCACCGACTTCTGGAGGTTGGTGT
ATGACTATGGCTGCACCTCCATCGTTATGCTCAACCAGCTGAACCAGTCCAACTCCGCCTGGCCCTGCCTTCAGTACTG
GCCTGAGCCTGGGCTCCAGCACTACGGCCCCATGGAGGTGGAGTACGTGTCAGGAGCAGCAGATGAGGACATCGTGTCC
CGTCTCTTCCGAGTGCAGAACATAACCCGGCTGCAGGAGGGGCACCTGATGGTCCGGCACTTCCAGTACCTGCGGTGGT
CAGCGTACAGAGACACCCCAGACTCCAAGAAGTCCTTCCTGCACCTCCTGGCCCAAGTGGAGAGGTGGCAGAAGGAGAG
CGGCGATGGCAGGACTGTGGTGCACTGCTTGAATGGGGGTGGCCGGAGTGGCACCTACTGTGCCTCCACCATGATCCTG
GAGATGATCAAGTGTCACAACATGGCAGATATCTTCTATGCTGCGAAGACCCTCCGTAACTACAAGCCAAATATGGTGG
AGACCTTGGAGCAGTATCACTTCTGCTACGACATAGCACTGGAATACTTGGAGTCCCTGGAGACCAGATAGCACCTCGC
CAGGAGGGCGAAGGCAGAGGTTTGCTTAGGGTTTGTGCCAAACTCGCGTTTTTGCACTTGGACGTTGCGTTAGTGCTGA
AGGTGAGGAGGGGGAAACAGCAAAGGACCACACACAGACACAAATCGGGAGCAACAAAAGGACGTGGGGAGGTGCTGCC
TGTTCTCCATCCTCTGCTCTCCGCCTTCCCTCCCACTGCTCCAAGTGCATGGCCATGGGTCGATGCTGCATCTCACCTC
GTCCCATCCCTGCTGTGATGTGGAGTTGGTGAGCATGGGA
CitationAerne B, Stoker A, Ish-Horowicz D. Chick receptor tyrosine phosphatase Psi is dynamically expressed during somitogenesis. Gene Expr Patterns. 2003 Jun;3(3):325-9.
CopyrightReprinted from Gene Expression Patterns, Volume 3, Issue 3, Birgit Aerne, Andrew Stoker, and David Ish-Horowicz, Chick receptor tyrosine phosphatase Ψ is dynamically expressed during somitogenesis, Pages 325-329, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_204492).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Early Mesoderm
Head Process
 
7-12
stage 7
stage 7
stage 8
stage 8
stage 9
stage 12
stage 12
stage 12
Forebrain
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Renal
Somites
Spinal Cord
amniocardiac vesicle
head fold
neural fold
pronephros
13-18
stage 18
stage 18
stage 18
stage 18
stage 18
Dermatome
Hindbrain
Leg Mesenchyme
Lens
Limb Mesoderm
Midbrain
Myotome
Nasal Placcode/Nerve
Nephric Tubules
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Renal
Rhombomeres
Spinal Cord
Telencephalon
Wing Mesenchyme
mesonephros
r1

Entry 2

GEISHA IdRPTPlambda.Badde.2005Data SourcePublication
Complete cDNA Template Probeshow
CTCATCAGCCGCACCAAGTGTGCAGAGCCCATGCGGGCCCCCAAAGGCCTGGCTTTCTCCGAGATCCAATCCAGGCAGC
TGACACTGCAGTGGGAACCGCTGGGCTACAACCTGACCCGCTGCCACACCTACAGCGTCTCGCTGTGCTACCGCTACCT
GGTGGGCAGCGGCCTCAACCAGACCTTCCGCGAGTGCGCCAAGATGGAGCGCAACGCCAACCGCTACACCATCAAAAAC
CTGCTGCCCTACAGGAACATCCACGTCAAGCTCATCCTCTCCAACCCCGAGGGCCGCAAGGAGGGCAAGGAGGTGACGT
TCCAGACGGATGAGGACGTGCCTGGTGGCATCGCCTCTGAGTCACTCACCTTCACCCCTCTGGAGGACATGATCTTTCT
GAAGTGGGAGGAACCGGTGGAGCCCAATGGCCTCATCACGCAGTACGAGATCAGCTACCAAAGCATTGAGTCCTCTGAC
CCAGCAGTCAACGTTCCCGGCCCGCGACGCACCGTCTCCAAGCTGCGCAATGAGACGTACCACGTCTTCTCCAACCTGC
ACCCTGGCACCACCTACCTCTTCTCAGTGCGTGCCCGCACAGGCAAGGGCTTTGGCCAGACAGCGCTCACAGAGATCAC
CitationBadde A, Bumsted-O'Brien KM, Schulte D. Chick receptor protein tyrosine phosphatase lambda/psi (cRPTPlambda/cRPTPpsi) is dynamically expressed at the midbrain-hindbrain boundary and in the embryonic neural retina. Gene Expr Patterns. 2005 Aug;5(6):786-91.
CopyrightCopyright © 2005 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204492).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
Headfold
Neural Plate/Tube
 
7-12
stage 9
stage 10
stage 11
stage 11
Diencephalon
Forebrain
Midbrain
Neural Plate/Tube
Rhombomeres
Floor Plate
13-18
stage 14
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 16
stage 16
stage 16
stage 16
Diencephalon
Eye
Forebrain
Isthmus/MHB
Lens
Midbrain
Nasal Placcode/Nerve
Neural Plate/Tube
Pharyngeal Arches and Clefts
Retina
 
19-24
stage 20
stage 20
Isthmus/MHB
Lens
Midbrain
Retina
 
25-30
stage 29
Eye
 
31-32
stage 32
stage 32
Eye
Retina
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.43624

Mouse

EmageMGI:1321151
EurexpressMGI:1321151
MGI GXDMGI:1321151

Frog

Xenbase922687

Fruit Fly

BDGP

Zebra Finch

ZEBrAPTPRU

Zebrafish

ZFINZDB-GENE-030131-7036, ZDB-GENE-060503-232
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