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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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RAC1
Rac family small GTPase 1

Gene

Official Symbol	RAC1
Official Full Name	Rac family small GTPase 1
CGNC ID	49523
also known as	CRAC1A, ras-related C3 botulinum toxin substrate 1\|GTPase cRac1A\|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1), RAC1, ras-related C3 botulinum toxin substrate 1, rho family, small GTP binding protein Rac1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205017
Polypeptide	NP_990348
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.42578

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	38831			FBgn0014011
Human	5879	ENSG00000136238		MIM:602048
Mouse	19353	ENSMUSG00000001847	All phenotypic alleles (7):Targeted, knock-out(3) Targeted, other(4)	MGI:97845
Xenopus	448118, 734382			489007
Zebrafish	327204, 562838	ENSDARG00000074849	ZDB-GENE-030131-5415, ZDB-GENE-060312-45	ZFIN:ZDB-GENE-030131-5415, ZFIN:ZDB-GENE-060312-45

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395871
Ensembl Gene	ENSGALG00000007130
KEGG	gga:395871

Entry 1

GEISHA Id	RAC1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CAGTTACACAACCAATGCG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGAGGGTGACTTTACAGCAGC	cDNA Template Length	526
Forward cDNA Template Probe	show AATTTTCTCTTCCTCTTCTTTACAGGGCGGGGGGCACAGAACTGCTCGGATAGCTTCGTCAAACACTGGTCTTGAGGCC TCGCTGTGTAAGTGCTGAGCATTCTAGGTATTTCACTGCACCTATCTCTTTTGCCATGGCAAGGCCCTGTGGGTAGGTG ATAGGAGTCAGCTTCTTCTCCTTCAGTTTTTCAATAGTGTCTTTATCATCTCTGAGATCAAGTTTGGTACCCACTAAAA TGATGGGAGTGTTGGGGCAATGGTGCCGCACCTCAGGATACCACTTAGCACGGACATTTTCAAAGGAAGCAGGACTCAC AAGGGAAAAGCAGATTAAGAAGACATCTGTTTGGGGGTAGGAGAGTGGGCGTAGTCTGTCATAGTCCTCTTGACCAGCT GTATCCCACAGGCCCAGATTGACTGGTTTGCCATCAACCATTACATTANCANAGTAGTTGTCAAAGACTGTGGGTATGT ATTCCCCAGGAAACGCATTGGTTGTGTAACTG

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Early Mesoderm
Extraembryonic Mesoderm
Primitive Streak

4-6

stage 4

stage 5

stage 6

Area Opaca
Area Pellucida
Early Mesoderm
Primitive Streak
Widespread Expression

7-12

stage 8

stage 9

stage 10

stage 12

Blood Islands
Heart Tube
Neural Plate/Tube
Widespread Expression

13-18

stage 15

stage 16

stage 18

Forebrain
Heart
Hindbrain
Lateral Plate Mesoderm
Leg Mesenchyme
Midbrain
Pharyngeal Arches and Clefts
Somites
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme

19-24

stage 20

stage 22

Amnion
Limb Buds
Myocardium
Spinal Ganglia and Nerves
Widespread Expression

25-27

stage 27

Myocardium
Spinal Ganglia and Nerves
Widespread Expression

Entry 2

GEISHA Id	Rac1A.McKinnell.2004	Data Source	Publication
Complete cDNA Template Probe	show CCTCGCTCAGCAGCCACGATGCAGGCCATCAAGTGTGTGGTGGTGGGCGACGGTGCTGTAGGTAAAACATGCCTACTCA TCAGTTACACAACCAATGCGTTTCCTGGGGAATACATACCCACAGTCTTTGACAACTACTCTGCTAATGTAATGGTTGA TGGCAAACCAGTCAATCTGGGCCTGTGGGATACAGCTGGTCAAGAGGACTATGACAGACTACGCCCACTCTCCTACCCC CAAACAGATGTCTTCTTAATCTGCTTTTCCCTTGTGAGTCCTGCTTCCTTTGAAAATGTCCGTGCTAAGTGGTATCCTG AGGTGCGGCACCATTGCCCCAACACTCCCATCATTTTAGTGGGTACCAAACTTGATCTCAGAGATGATAAAGACACTAT TGAAAAACTGAAGGAGAAGAAGCTGACTCCTATCACCTACCCACAGGGCCTTGCCATGGCAAAAGAGATAGGTGCAGTG AAATACCTAGAATGCTCAGCACTTACACAGCGAGGCCTCAAGACAGTGTTTGACGAAGCTATCCGAGCAGTTCTGTGCC CCCCGCCTGTAAAGAAGAGGAAGAGAAAATGTCTGCTGCTGTAAAGTCACCCTCCCCCACCCCTCCAAACCCTGTGCTT TGCTCAGAACAATGGAGCATCACATTCAATGCCAAGTTTGTCTATTATAAATTAGTTCTCTTCCATAAATTTTTG
Citation	McKinnell IW, Makarenkova H, de Curtis I, Turmaine M, Patel K. EphA4, RhoB and the molecular development of feather buds are maintained by the integrity of the actin cytoskeleton. Dev Biol. 2004 Jun 1;270(1):94-105.
Copyright	Reprinted from Developmental Biology, Volume 270, Issue 1, Iain W. McKinnell, Helen Makarenkova, Ivan de Curtis, Makr Turmaine, and Ketan Patel, EphA4, RhoB and the molecular development of feather buds are maintained by the integrity of the actin cytoskeleton, Pages 94-105, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in the publication to verify the exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (acc # NM_205017.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

25-30

stage 29

stage 30

Feathers/Scutae

stage 31

Feathers/Scutae

Entry 3

GEISHA Id	RAC1.Kee.2007	Data Source	Publication
Complete cDNA Template Probe	show CCTCGCTCAGCAGCCACGATGCAGGCCATCAAGTGTGTGGTGGTGGGCGACGGTGCTGTAGGTAAAACATGCCTACTCA TCAGTTACACAACCAATGCGTTTCCTGGGGAATACATACCCACAGTCTTTGACAACTACTCTGCTAATGTAATGGTTGA TGGCAAACCAGTCAATCTGGGCCTGTGGGATACAGCTGGTCAAGAGGACTATGACAGACTACGCCCACTCTCCTACCCC CAAACAGATGTCTTCTTAATCTGCTTTTCCCTTGTGAGTCCTGCTTCCTTTGAAAATGTCCGTGCTAAGTGGTATCCTG AGGTGCGGCACCATTGCCCCAACACTCCCATCATTTTAGTGGGTACCAAACTTGATCTCAGAGATGATAAAGACACTAT TGAAAAACTGAAGGAGAAGAAGCTGACTCCTATCACCTACCCACAGGGCCTTGCCATGGCAAAAGAGATAGGTGCAGTG AAATACCTAGAATGCTCAGCACTTACACAGCGAGGCCTCAAGACAGTGTTTGACGAAGCTATCCGAGCAGTTCTGTGCC CCCCGCCTGTAAAGAAGAGGAAGAGAAAATGTCTGCTGCTGTAAAGTCACCCTCCCCCACCCCTCCAAACCCTGTGCTT TGCTCAGAACAATGGAGCATCACATTCAATGCCAAGTTTGTCTATTATAAATTAGTTCTCTTCCATAAATTTTTG
Citation	Yun Kee, Byung Joon Hwang, Paul W. Sternberg, Marianne Bronner-Fraser. Evolutionary conservation of cell migration genes: from nematode neurons to vertebrate neural crest. Genes Dev. 2007 February 15; 21(4): 391396.
Copyright	Copyright © 2007, Cold Spring Harbor Laboratory Press
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205017.1 ).