GEISHA - A Chicken Embryo Gene Expression Database
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SALL1
spalt like transcription factor 1

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolSALL1
Official Full Namespalt like transcription factor 1
CGNC ID49323
also known asSAL1, Spalt, sal-like protein 1|sal-like 1|spalt 1|transcription factor Spalt, sal-like 1, csal-1, SALL1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204707
PolypeptideNP_990038
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.1817
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly34568FBgn0000287
Human6299ENSG00000103449MIM:107480MIM:602218
Mouse58198ENSMUSG00000031665All phenotypic alleles (10):Targeted, knock-out(4) Targeted, other(6) MGI:1889585
Xenopus100036618, 379679, 100337600491392
Zebrafish555721, 170966ENSDARG00000074319ZDB-GENE-020228-2, ZDB-GENE-020228-3ZFIN:ZDB-GENE-020228-2, ZFIN:ZDB-GENE-020228-3
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395446
Ensembl Gene
KEGGgga:395446

Entry 1

GEISHA Idcsal1.Sweetman.2005Data SourcePublication
Complete cDNA Template Probeshow
TTCTGTGCTAAAGTGTTTGGGAGTGACAGTGCCTTGCAGATTCATTTACGTTCTCACACTGGCGAGAGGCCATTTAAAT
GCAACATATGTGGAAACAGGTTCTCCACAAAGGGAAACTTAAAAGTCCACTTTCAGCGGCATAAAGAAAAATATCCTCA
TATTCAGATGAATCCGTACCCAGTGCCAGAGCATTTGGACAATATTCCTACAAGCACGGGTATTCCTTATGGGATGTCT
ATACCGCCAGAGAAGCCTGTCACGAGCTGG
CitationSweetman D, Smith TG, Farrell ER, Münsterberg A. Expression of csal1 in pre limb-bud chick embryos. Int J Dev Biol. 2005;49(4):427-30.
Copyright"Reprinted from Int. J. Dev. Biol., 49, Sweetman D, Smith TG, Farrell ER, Münsterberg A, Expression of csal1 in pre limb-bud chick embryos, 427-30, Copyright (2005), with permission from Copyright © 2005 UBC Press". All rights reserved.
CommentsThe EMBL/GenBank accession number of csal1 given in the paper is: AF288697. According to the authors referenced: Primer sequences used to isolate the probe template corresponded to the following amino acid residues: FCAKVFG (5'-TTYTGYGCIAARGTITTYGG-3') and EKPVTTW (antisense, 5'-CCAIGTIGTIACIGGYTTYTC-3').
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Hensen's Node
 
4-6
stage 5
stage 6
Head Process
Headfold
Hensen's Node
Neural Plate/Tube
Notochord
 
7-12
stage 7
stage 10
stage 12
stage 12
Ectoderm
Endoderm
Headfold
Heart Tube
Hensen's Node
Neural Plate/Tube
Notochord
Oral Pharynx
Paraxial Mesoderm
Pharynx
Sinus Venosus
Somites
Surface Ectoderm
Stomadeum
13-16
stage 14
stage 14
stage 16
stage 16
Endoderm
Paraxial Mesoderm
Pharynx
Sinus Venosus
 

Entry 2

GEISHA IdSALL1.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CCAGCATGTCGCGGAGGAAGCAGGCGAAGCCTCAGCATTTCCAATCCGACCCCGATCTGGCCTCGTTATCCCAGCGAAA
TGGAGACACAGAAAAGGGTCAAGGAAATCGAACCACTAAGAATAAGGACGCCCATGTCTGTGGCAGGTGCTGTGCTGAG
TTCTTTGAATTATCAGATCTCCTGCAACACAAGAAGAACTGTACTAAAAATCAATTAGTTTTAATTGTGAATGAAAATC
CAGCTTCTCCTCCTGAAACCTTCCCTCCTCGTTCCCCTTCTGATAATCCTGATGAACAGATGAATGACACAGTTAATAA
CACAGATCAAGTAGACTGCAGTGACCTTTCAGAGCGTAACAAACTTGACAAGGAAGAATCCATGGATGTGGAGGCTTCC
AGCATTAACAATAGCAGTAGCAGTTCCAAGAGTGTCAACAATAGTATTACAAGCAGTAACAGCTCCACAATGGGTACCT
CAGCTGTAACAACCTCTCTACCTCACATAGGGGATCTGACGACGTTAGGCAACTTTTCAGTAATAAACAGTAACGTAAT
AATTGAAAATCTTCAGAGTACTAAAGTGGCAGTAGCACAGTTCTCCCAGGAAGCAAGGTGTAACGGTGCATCGAACAAC
AAGCTTGCTGTACCTGCCCTGATGGAGCAACTGGTTTGGCTTTACAGCAGCAGCAGATCCACCCAGTTGCAACTGATTG
AACAAATTCGTCACCAAATATATTGTTGGCTTCCCAAAATACGGACATGCCAACGTCTTCAAGCCCCGTCTCAAGGTAC
TTTAACGAGCATCTGCCAACCCCTTGTCCCACATTTAAGTTCCCCTTTATCC
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XII
Ubiquitous
ubiquitous but absent in posterior area pellucida epiblast and marginal zone
1-3
stage 3
Hensen's Node
Primitive Streak
Hensen's node / anterior primitive streak
4-6
stage 6
Headfold
Neural Plate/Tube
Paraxial Mesoderm
neural plate / neural plate border / head fold / paraxial mesoderm
7
stage 7
Neural Plate/Tube
Paraxial Mesoderm
neural plate / paraxial mesoderm
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.1817

Mouse

EmageMGI:1889585
EurexpressMGI:1889585
MGI GXDMGI:1889585

Frog

Xenbase491392

Fruit Fly

BDGPFBgn0000287

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-020228-2, ZDB-GENE-020228-3
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