GEISHA - A Chicken Embryo Gene Expression Database
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SATB2
SATB homeobox 2

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolSATB2
Official Full NameSATB homeobox 2
CGNC ID6166
also known asDNA-binding protein SATB2|special AT-rich sequence binding protein
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001199110
PolypeptideNP_001186039
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.32259
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human23314ENSG00000119042MIM:119540MIM:608148
Mouse212712ENSMUSG00000038331All phenotypic alleles (5):Targeted, knock-out(1) Targeted, other(4) MGI:2679336
Xenopus1004940025822251
Zebrafish563435ENSDARG00000061885ZDB-GENE-070912-212ZFIN:ZDB-GENE-070912-212
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene424063
Ensembl GeneENSGALG00000008135
KEGGgga:424063

Entry 1

GEISHA IdSATB2.Sheehan-Rooney.2010Data SourcePublication
Complete cDNA Template Probeshow
CAGAGATGAGCTGAAGAGAGCCAGTGTATCTCAAGCTGTCTTTGCACGAGTAGCATTCAACCGCACACAGGGCTTGTTG
TCTGAGATCCTGCGTAAAGAAGAAGACCCCAGGACAGCTTCCCAGTCCCTCCTGGTAAACTTAAGGGCAATGCAGAATT
TCCTCAACTTGCCTGACTCGGAACGGGATCGAATCTATCAGGATGAGAGAGAGAGAAGCATGAACCCTAATGTGAGCAT
GGTGTCTTCAGCAGCCAGCAGCCCAAGCTCCTCTAGAACTCCCCAGGCCAAAACCTCGACACCAACAACAGACCTCCCC
ATTAAGGCGGACGGCGCCAACTTCAACATCACAGCTGCCATTTATGACGAGATCCAACAGGAGATGAAAAGGGCCAAGG
TATCTCAAGCTCTGTTTGCCAAAGTGGCTGCCAATAAAAGTCAGGGCTGGCTGTGCGAGCTACTTCGCTGGAAAGAAAA
CCCGAGTCCAGAAAACCGCACCCTCTGGGAGAACCTCTGCACCATTCGCCGTTCCTGAACCTTCCTCAGCACGAGAGGG
ATGTGATCTATGAGGAGGAGTCCAGACATCACCACAGTGAGCGTATGCAGCATGTTTGTCCAGCTCACTCCTGAGCCTG
TGCAGGTGCTGCACAGACAGCAGTCCCAGCCTGCAAAGG
CitationSheehan-Rooney K, Pálinkášová B, Eberhart JK, Dixon MJ. A cross-species analysis of Satb2 expression suggests deep conservation across vertebrate lineages. Dev Dyn. 2010 Dec;239(12):3481-91.
Copyright© 2010 Wiley-Liss, Inc.
CommentsThe sequence below was obtained from NCBI (GenBank Acc: BU378469) using the information provided in the publication.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
stage 24
Face Mesenchyme
gl, globular process; mx, maxillary process; md mandibular process
25-30
stage 27
stage 27
stage 29
stage 29
stage 29
stage 29
stage 29
Face Mesenchyme
Limb Buds
gl, globular process;md, mandibular process; mx, maxillary process
lateral forelimb view
mc, Meckel’s cartilage; md, mandibular process; ps, palatal shelves
md, mandibular process; ps, palatal shelves
mx, maxillary process
31-36
stage 31
stage 31
stage 31
stage 34
stage 34
stage 35
stage 36
Face Mesenchyme
mc, Meckel’s cartilage; md, mandibular process; ps, palatal shelves; t, tongue
md, mandibular process; t, tongue
ps, palatal shelves

Entry 2

GEISHA IdSATB2.Brugmann.2010Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGCGGAGGAGCGAGAGCCCCTGCCTGCGGGACAGCCCCGACAGAGGCAGCGGCAGCCCCGATGTCAAAGGGCCCC
CCCCCGGGAAGGTGGCCAGGCTGGAGCAGAACGGCAGCCCCATGGGCACCCGCGGGAGGCCCAACGGCGCCGTCGCCAA
ACCCGTGGGAGGTTTGATGATTCCAGTCTTTTGTGTGGTGGAGCAGTCGGATGCCTCTCTTGAATATGATAATCGAGAA
GAGCATGCTGAGTTCGTTCTGGTTCGCAAAGATGTGCTCTTTAGCCAGCTGGTGGAGACAGCGCTCCTGGCTCTGGGGT
ATTCCCACAGCTCTGCGGCTCAGGCACAAGGAATAATCAAGCTTGGGAGGTGGAATCCCCTCCCTCTCAGTTATGTGAC
TGATGCACCAGATGCAACAGTAGCTGACATGCTACAAGATGTCTATCATGTTGTGACATTGAAAATCCAATTACAAAGT
TGTTCCAAGTTGGAAGACTTGCCAGCAGAGCAGTGGAACCATGCCACAGTTCGCAATGCCTTAAAGGAACTGCTCAAAG
AGATGAATCAGAGCACATTAGCCAAAGAATGCCCTCTTTCACAGAGTATGATTTCATCCATTGTAAATAGCACATACTA
TGCCAATGTGTCAGCAACCAAGTGCCAGGAGTTTGGGAGATGGTACAAAAAGTACAAGAAGATTAAAGTGGAAAGAGTG
GAAAGAGAAAACCTTTCAGACTATTGTGTTCTTGGTCAACGTCCCATGCACTTACCAAATATCAACCAACTGGCAACTT
TGGGAAAAACTAACGAACAGTCTCCTCATGGCCAAATTCACCACAGTACTCCAATTCGAAACCAAGTGCCAACGATGCA
GACAATGATAAACCCTGGGCTCCTGTCTCCTCAGCTCAGTCCACAACTGGTGAGGCAGCAGATAGCAATGGCCCATCTG
ATAAACCAACAGATTGCCGTCAGCCGGCTATTGGCTCACCAGCACCCACAAGCTATCAACCAGCAGTTCTTGAATCATC
CACCCATCCCTAGAGCTGTCAAACCAGAGCCATCAAATTCATCGGTGGAAGTCTCTCCAGATATTTACCAGCAAGTCAG
AGATGAGCTGAAGAGAGCCAGTGTATCTCAAGCTGTCTTTGCACGAGTAGCATTCAACCGCACACAGGGCTTGTTGTCT
GAGATCCTGCGTAAAGAAGAAGACCCCAGGACAGCTTCCCAGTCCCTCCTGGTAAACTTAAGGGCAATGCAGAATTTCC
TCAACTTGCCTGACTCGGAACGGGATCGAATCTATCAGGATGAGAGAGAGAGAAGCATGAACCCTAATGTGAGCATGGT
GTCTTCAGCAGCCAGCAGCCCAAGCTCCTCTAGAACTCCCCAGGCCAAAACCTCGACACCAACAACAGACCTCCCCATT
AAGGCGGACGGCGCCAACGTCAACATCACAGCTGCCATTTATGACGAGATCCAACAGGAGATGAAAAGGGCCAAGGTAT
CTCAAGCTCTGTTTGCCAAAGTGGCTGCCAATAAAAGTCAGGGCTGGCTGTGCGAGCTACTTCGCTGGAAAGAAAACCC
GAGTCCAGAAAACCGCACCCTCTGGGAGAACCTCTGCACCATTCGCCGCTTCCTGAACCTTCCTCAGCACGAGAGGGAT
GTGATCTATGAGGAGGAGTCCAGACATCACCACAGTGAGCGTATGCAGCATGTTGTCCAGCTCACTCCTGAGCCTGTGC
AGGTGCTGCACAGACAGCAGTCCCAGCCTGCAAAGGAGAATTCCCCACCGAGAGAAGAGGCTCCTCCTCCACCCGCTGA
GGACAGTTGCGCCAAAAAGCCCAGATCCCGCACCAAGATATCCCTGGAAGCTCTAGGTATCCTTCAAAGCTTTATCCAC
GATGTAGGTCTCTACCCTGATCAGGAAGCCATTCATACCCTCTCTGCTCAGCTGGATCTCCCCAAACACACCATCATCA
AATTTTTCCAGAACCAACGTTACCATGTAAAGCACCATGGGAAGCTAAAAGAGCATTTGGGAACAGTGGTTGATGTGGC
AGAGTACAAAGATGAGGAGCTGCTGACAGAGTCGGAGGAGAACGACAGCGAGGAGGGCTCGGAGGAGATGTACAAAGTG
GAGCCTGAGGAGGAAAACCCCGAGAAAAGCAAGGCAGCTCCAGCAGACATCGACCAGAGATAA
CitationS.A. Brugmann, K.E. Powder, N.M. Young, L.H. Goodnough, S.M. Hahn, A.W. James, J.A. Helms, M. Lovett. Comparative gene expression analysis of avian embryonic facial structures reveals new candidates for human craniofacial disorders. Hum Mol Genet. 2010 March 1; 19(5): 920–930.
CopyrightCopyright © The Author 2009. Published by Oxford University Press. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001199110.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
stage 25
Face Mesenchyme
Pharyngeal Arches and Clefts
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.32259

Mouse

EmageMGI:2679336
EurexpressMGI:2679336
MGI GXDMGI:2679336

Frog

Xenbase5822251

Fruit Fly

BDGP

Zebra Finch

ZEBrASATB2

Zebrafish

ZFINZDB-GENE-070912-212
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