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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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NKX1-1
NK1 homeobox 1

Gene

Official Symbol	NKX1-1
Official Full Name	NK1 homeobox 1
CGNC ID	56932
also known as	NK1 transcription factor-related protein 1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001234891
Polypeptide	XP_001234892
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	54729	ENSG00000235608
Mouse	672284		All phenotypic alleles (1):Targeted, other(1)	MGI:109346
Xenopus	100493120			488878
Zebrafish	407077	ENSDARG00000012697	ZDB-GENE-040615-2	ZFIN:ZDB-GENE-040615-2

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development
Cellular Component	nucleus

Links to other databases

Entrez Gene	771636
Ensembl Gene
KEGG	gga:771636

Entry 1

GEISHA Id	SAX1.DiezdelCorral.2002	Data Source	Publication
Complete cDNA Template Probe	show ATGGACAGCCATGGGGAGCAGCGGCTGTCGGCCGGCGGAGAGCTGCCGCTCTACTCCTGCCCTGGGAATAGGGACAGAC AAGGGGACAGCCAGAGCAACACTCCCGGACAAGAGGGGGCAGTGGCCGCGCTGCCCATAGTGCACAGAACCACCTCCTT CTCCGTGCTCGACATACTGGACCCTAACAAATTCAACAGCAAAAGGAGGCAATGCGCGGTCTTGTACAAATCGGTGGCG ACCGAGTTCACGCTGGGGGCGGAGGATAAGCCCGAGGACTCAGGGACGGAGCTGGCCGAGCCAAAAGCTCTCGCCGAAG ATTTCGACACGTGCAAGAAGTCCGCAGAGCTGATCAAGGACGGCGAGCTCTACAAGGCCGAGGAGTGCGACCTGGACTA CAGCAGCCGGCCGAGCCGCAGCCCCGACAGCGAGCTGCAGGACGACGAGGAGCTGTGCAGCGAGGAGAGCAGCAGCAGC GGCAGCACCGGCAGCGGCTCGGCGGCTCCCGGCGAGGCCGAGGCGGGCCCGCAGCACTCCGAGGCTCCCGAGGCGCAGC CGCCGCCGCCCCAGCAGCCCGGCGGAGGGCAGCAGCAGGCCAAGCCCAAGAGGAAGCGCACGGGCTCGGACTCCAAGTC GGGCAAACCCCGGCGGGCGCGGACAGCTTTCACCTACGAGCAGCTGGTGGCGCTGGAGAACAAGTTCAAGTCCACGCGG TACCTGTCGGTGTGCGAGCGCCTCAACCTGGCGCTCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGA ACCGCCGCACCAAGTGGAAGAAGCAGAACCCGGGCGCCGACACCAGCGCGCCCACCGGCGGCGGCGGGGCGGGCGGCGG GGCGGGCGGGGCGCTGGGCGGAGGGGCGCTGCCGGGCGGCCTCAGCCCGCTCAGCCACTCGCCGCCCATGGGCAACCCG CTGTCCATGCACGGGCCCGGCAGCTACGCGGGTCACCCGGCCGGGGGGTTGGTGTGCGCCGCCCAGCTGCCCTTCCTGC CCAGCCCAGCCGTCCTCTCGCCCTTCGTGCTGGGCTCGCAGACTTACGGCGCTCCGGCTTTCTACACCCCTCACCTATA A
Citation	Diez del Corral R, Breitkreuz DN, Storey KG., Onset of neuronal differentiation is regulated by paraxial mesoderm and requires attenuation of FGF signalling. Development. 2002 Apr;129(7):1681-91.
Copyright	Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Storey
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #XM_001234891.2)

Stage

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Location (click to highlight)

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7-9

stage 9

Neural Plate/Tube

Entry 2

GEISHA Id	SAX1.Schubert.2005	Data Source	Publication
Complete cDNA Template Probe	show ATGGACAGCCATGGGGAGCAGCGGCTGTCGGCCGGCGGAGAGCTGCCGCTCTACTCCTGCCCTGGGAATAGGGACAGAC AAGGGGACAGCCAGAGCAACACTCCCGGACAAGAGGGGGCAGTGGCCGCGCTGCCCATAGTGCACAGAACCACCTCCTT CTCCGTGCTCGACATACTGGACCCTAACAAATTCAACAGCAAAAGGAGGCAATGCGCGGTCTTGTACAAATCGGTGGCG ACCGAGTTCACGCTGGGGGCGGAGGATAAGCCCGAGGACTCAGGGACGGAGCTGGCCGAGCCAAAAGCTCTCGCCGAAG ATTTCGACACGTGCAAGAAGTCCGCAGAGCTGATCAAGGACGGCGAGCTCTACAAGGCCGAGGAGTGCGACCTGGACTA CAGCAGCCGGCCGAGCCGCAGCCCCGACAGCGAGCTGCAGGACGACGAGGAGCTGTGCAGCGAGGAGAGCAGCAGCAGC GGCAGCACCGGCAGCGGCTCGGCGGCTCCCGGCGAGGCCGAGGCGGGCCCGCAGCACTCCGAGGCTCCCGAGGCGCAGC CGCCGCCGCCCCAGCAGCCCGGCGGAGGGCAGCAGCAGGCCAAGCCCAAGAGGAAGCGCACGGGCTCGGACTCCAAGTC GGGCAAACCCCGGCGGGCGCGGACAGCTTTCACCTACGAGCAGCTGGTGGCGCTGGAGAACAAGTTCAAGTCCACGCGG TACCTGTCGGTGTGCGAGCGCCTCAACCTGGCGCTCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGA ACCGCCGCACCAAGTGGAAGAAGCAGAACCCGGGCGCCGACACCAGCGCGCCCACCGGCGGCGGCGGGGCGGGCGGCGG GGCGGGCGGGGCGCTGGGCGGAGGGGCGCTGCCGGGCGGCCTCAGCCCGCTCAGCCACTCGCCGCCCATGGGCAACCCG CTGTCCATGCACGGGCCCGGCAGCTACGCGGGTCACCCGGCCGGGGGGTTGGTGTGCGCCGCCCAGCTGCCCTTCCTGC CCAGCCCAGCCGTCCTCTCGCCCTTCGTGCTGGGCTCGCAGACTTACGGCGCTCCGGCTTTCTACACCCCTCACCTATA A
Citation	Schubert FR, Lumsden A. Transcriptional control of early tract formation in the embryonic chick midbrain. Development. 2005 Apr;132(8):1785-93. Epub 2005 Mar 16.
Copyright	copyright 2005 by the authors. Published by the Company of Biologists Ltd.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_001234891.2 ).

Stage

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Location (click to highlight)

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13-18

stage 17

stage 18

Mesencephalon
Midbrain

19-24

stage 19

stage 20

stage 21

stage 22

stage 23

Mesencephalon

double labeled

25-27

stage 25

stage 27

Diencephalon
Mesencephalon
Midbrain
Rhombomeres

Entry 3

GEISHA Id	SAX1.Bertrand.2000	Data Source	Publication
Complete cDNA Template Probe	show ATGGACAGCCATGGGGAGCAGCGGCTGTCGGCCGGCGGAGAGCTGCCGCTCTACTCCTGCCCTGGGAATAGGGACAGAC AAGGGGACAGCCAGAGCAACACTCCCGGACAAGAGGGGGCAGTGGCCGCGCTGCCCATAGTGCACAGAACCACCTCCTT CTCCGTGCTCGACATACTGGACCCTAACAAATTCAACAGCAAAAGGAGGCAATGCGCGGTCTTGTACAAATCGGTGGCG ACCGAGTTCACGCTGGGGGCGGAGGATAAGCCCGAGGACTCAGGGACGGAGCTGGCCGAGCCAAAAGCTCTCGCCGAAG ATTTCGACACGTGCAAGAAGTCCGCAGAGCTGATCAAGGACGGCGAGCTCTACAAGGCCGAGGAGTGCGACCTGGACTA CAGCAGCCGGCCGAGCCGCAGCCCCGACAGCGAGCTGCAGGACGACGAGGAGCTGTGCAGCGAGGAGAGCAGCAGCAGC GGCAGCACCGGCAGCGGCTCGGCGGCTCCCGGCGAGGCCGAGGCGGGCCCGCAGCACTCCGAGGCTCCCGAGGCGCAGC CGCCGCCGCCCCAGCAGCCCGGCGGAGGGCAGCAGCAGGCCAAGCCCAAGAGGAAGCGCACGGGCTCGGACTCCAAGTC GGGCAAACCCCGGCGGGCGCGGACAGCTTTCACCTACGAGCAGCTGGTGGCGCTGGAGAACAAGTTCAAGTCCACGCGG TACCTGTCGGTGTGCGAGCGCCTCAACCTGGCGCTCTCGCTCAGCCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGA ACCGCCGCACCAAGTGGAAGAAGCAGAACCCGGGCGCCGACACCAGCGCGCCCACCGGCGGCGGCGGGGCGGGCGGCGG GGCGGGCGGGGCGCTGGGCGGAGGGGCGCTGCCGGGCGGCCTCAGCCCGCTCAGCCACTCGCCGCCCATGGGCAACCCG CTGTCCATGCACGGGCCCGGCAGCTACGCGGGTCACCCGGCCGGGGGGTTGGTGTGCGCCGCCCAGCTGCCCTTCCTGC CCAGCCCAGCCGTCCTCTCGCCCTTCGTGCTGGGCTCGCAGACTTACGGCGCTCCGGCTTTCTACACCCCTCACCTATA A
Citation	Bertrand N, Médevielle F, Pituello F FGF signalling controls the timing of Pax6 activation in the neural tube. Development. 2000 Nov;127(22):4837-43.
Copyright	copyright held by the authors. Published by the Company of Biologists, Ltd.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI XM_001234891.2