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SEMA3F
semaphorin 3F

Gene
Official SymbolSEMA3F
Official Full Namesemaphorin 3F
CGNC ID49045
also known assemaphorin-3F, semaphorin-3F|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204258
PolypeptideNP_989589
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.14
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6405ENSG00000001617MIM:601124
Mouse20350ENSMUSG00000034684All phenotypic alleles (7):Targeted, knock-out(2) Targeted, other(4) Gene trapped(1) MGI:1096347
Xenopus496575, 100158345940270
Zebrafish544658, 799945ENSDARG00000011163, ENSDARG00000055373ZDB-GENE-050513-1, ZDB-GENE-050513-2ZFIN:ZDB-GENE-050513-1, ZFIN:ZDB-GENE-050513-2
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene374109
Ensembl GeneENSGALG00000013370
KEGGgga:374109

Entry 1

GEISHA IdSEMA3F.Jin.2006Data SourcePublication
Complete cDNA Template Probeshow
TGGAGCACCTTCCTGAAGGCCCGGCTCGTCTGCTCCGTGCCAGGACCCGATGGGATCGAGACGCACTTTGATGAGCTTC
AGGACGTCTTCATCCAGCAGACTCAGGACACCAAGAATCCTGTTATCTACGCCGTCTTCTCCGCATCGGGGTCGGTGTT
CAAGGGCTCGGCTGTCTGCGTTTACTCCATGGCCGACATCCGCATGGTGTTCAATAGGCCCTTCGCGCACAAGGAGGGT
CCCAACTACCAGTGGATGCCCTACACGGGCAAAATGCCCTACCCCCGGCCGGGCACCTGCCCCGGGGGGACCTTCACAC
CCTCCATGAAGTCAACCAAGGACTACCCCGACGAAGTGATCAACTTCATGCGCTCTCACCCTCTGATGTACCACGCCGT
CTACCCGGCCCACCGGCAGCCTCTGGTCGTGCGCACCAACGTCAACTACCGCTTCACCACCATCGCTGTTGACCAGGTG
GACGCGGCAGATGGGCGCTATGAGGTGCTTTTCCTGGGCACAGATCGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCC
GGGACGACATGGAGACAGAGGAGCTGATGCTGGAGGAGATCGAGGTGTTCAAGGTGCCAGCACCCATCAAGATGATGAC
CATCTCCTCCAAGAGGCAACAGCTTTACGTGTCCTCGGCAGTAGGAGTGACCCACCTGGCCCTGCACCGGTGTGACGTG
TATGGAGAAGCCTGTGCTGACTGCTGCCTGGCCCGCGACCCATACTGTGC
CitationJin Z, Chau MD, Bao ZZ. Sema3D, Sema3F, and Sema5A are expressed in overlapping and distinct patterns in chick embryonic heart. Dev Dyn. 2006 Jan;235(1):163-9.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 28
stage 28
Heart
Valves
Cardiac Cushion; Interventricular Septum
Mesenchyme of Cardiac Cushion
31-38
stage 35
stage 35
stage 38
stage 38
Heart
Myocardium
 

Entry 2

GEISHA IdSema3F.Riley.2010Data SourcePublication
Complete cDNA Template Probeshow
GAATTCGGCACGAGTCCGCATCGGGGTCGGTGTTCAAGGGCTCGGCTGTCTGCGTTTACTCCATGGCCGACATCCGCAT
GGTGTTCAATGGGCCCTTCGCGCACAAGGAGGGCCCCAACTACCAGTGGATGCCCTACACGGGCAAAATGCCCTACCCC
CGGCCGGGCACCTGCCCCGGGGGGACCTTCACACCCTCCATGAAGTCAACCAAGGACTACCCCGACGAAGTGATCAACT
TCATGCGCTCTCACCCTCTGATGTACCACGCCGTCTACCCGGCCCACCGGCAGCCTCTGGTCGTGCGCACCAACGTCAA
CTACCGCTTCACCACCATCGCTGTTGACCAGGTGGACGCGGCAGATGGGCGCTATGAGGTGCTTTTCCTGGGCACAGAT
CGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCCGGGATGACATGGAGACAGAGGAGCTGATGCTGGAGGAGATCGAGG
TGTTCAAGGTGCCAGCACCCATCAAGATGATGACCATCTCCTCCAAGAGGCAACAGCTTTACGTGTCCTCGGCAGTAGG
AGTGACCCACCTGGCCCTGCACCGGTGTGACGTGTATGGAGAAGCCTGTGCTGACTGCTGCTGCCCGCGACCCATACTG
TGCCTGGGATGGCAGGGCCTGCAGCCGCTACTCAACATCCTCAAAGGCGGACANGCGGNAGGACGTCCGGCACGGCAAC
CCCATGCGCCGTGCCGAGGTACAACTTCAATGCCACAAGAACA
CitationRiley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53.
CommentsThe authors indicate the clone used is Sema3F (ROS012B12). This corresponds to NCBI acc# AL584625.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 13
stage 17
Isthmus/MHB
Midbrain
 
19-20
stage 20
Isthmus/MHB
Midbrain
 

Entry 3

GEISHA IdSEMA3F.Gammill.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGCCCGTGGCCACCGTCCTGCTCTGGGCCACCCTGCTGACCCTGGGCTGGCGGGCAGCCCACGGCAAGGACGGCGTGC
CTCCTACCCCCAGGGTGCAGCTCTCCTTCAAAGAGCTGAAGGCCACCGGCACCGCGCACTTCTTCAACTTCCTGCTCAA
CTCCAGTGACTACCGCATCCTGCTGAAGGACGAGGACCACGACCGCATGTACGTGGGCAGCAAGGACTACGTCCTCTCT
CTGGACCTGCACGACATCAACCGCGAGCCCCTCATCATCCACTGGCCTGCCTCCCAGCAGAGGATCGAGGAGTGCATCC
TGTCGGGCAAGAACAGCAATGGGGAGTGTGGCAACTTCATCCGCCTGATCCAGCCCTGGAACCGGACTCACCTCTACGT
GTGCGGCACCGGCGCCTACAACCCCATCTGCGCCTTCATCAACCGTGGGCGCAAAGCACAGGATTATATCTTCTACCTA
GAGCCGGACAAGCTGGAGTCAGGCAAAGGGAAGTGTTCTTATGACCCCAAAGTGGACACCGTCTCTGCATTGATAAATG
AAGAGCTCTATGCTGGGGTCTACATCGACTTCATGGGCACTGATGCAGCCATCTTCCGCACTATGGGCAAGCAGACAGC
CATGAGGACAGACCAGTACAATTCACGCTGGCTCAACGACCCTGCCTTCGTCCGTGCCCAGCTCATCCCTGACAGCAGC
GAGAGGAATGATGACAAACTCTACTTCTTCTTCCGGGAGAAGTCGGCGGATGCCCCGCTCAGCCCCGGGGTCTATTCCC
GCATCGGGCGCATCTGCCTGAACGACGATGGAGGACACTGCTGCCTGGTGAACAAATGGAGCACCTTCCTGAAGGCCCG
GCTCGTCTGCTCCGTGCCAGGACCCGATGGGATCGAGACGCACTTTGATGAGCTTCAGGACGTCTTCATCCAGCAGACT
CAGGACACCAAGAATCCTGTTATCTACGCCGTCTTCTCCGCATCGGGGTCGGTGTTCAAGGGCTCGGCTGTCTGCGTTT
ACTCCATGGCCGACATCCGCATGGTGTTCAATAGGCCCTTCGCGCACAAGGAGGGTCCCAACTACCAGTGGATGCCCTA
CACGGGCAAAATGCCCTACCCCCGGCCGGGCACCTGCCCCGGGGGGACCTTCACACCCTCCATGAAGTCAACCAAGGAC
TACCCCGACGAAGTGATCAACTTCATGCGCTCTCACCCTCTGATGTACCACGCCGTCTACCCGGCCCACCGGCAGCCTC
TGGTCGTGCGCACCAACGTCAACTACCGCTTCACCACCATCGCTGTTGACCAGGTGGACGCGGCAGATGGGCGCTATGA
GGTGCTTTTCCTGGGCACAGATCGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCCGGGACGACATGGAGACAGAGGAG
CTGATGCTGGAGGAGATCGAGGTGTTCAAGGTGCCAGCACCCATCAAGATGATGACCATCTCCTCCAAGAGGCAACAGC
TTTACGTGTCCTCGGCAGTAGGAGTGACCCACCTGGCCCTGCACCGGTGTGACGTGTATGGAGAAGCCTGTGCTGACTG
CTGCCTGGCCCGCGACCCATACTGTGCCTGGGATGGCAAGGCCTGCAGCCGCTACTCAGCATCCTCCAAGAGGCGGAGC
AGGCGGCAGGACGTCCGGCACGGCAACCCCATGCGCCAGTGCCGAGGCTACAACTCCAATGCCAACAAGAACACGGTGG
AGGCCGTGCAGTACGGGGTGGAGGGCAGCACCGCCTTCCTCGAGTGCCAGCCCCGCTCTCCACAAGCCACCGTCAAATG
GCTGCTGCAGAAGGACAACAGCGACCGACGGAAAGAGCTGCGCACAGAGGGCGGCCGGGCACTGCGGACAGAGCAGGGC
TTGCTGCTGCGTGCCCTGCAGCTCTCCGACAGCGGCCTCTACTCCTGCACCGCCACCGAGAACAACTTCAAGCACACGG
TGACCAAGGTGCAGCTGCGAGTCCTGGCCGCCCGCGCCGTGCACGCCGTCCTGCTGCAAGGCGAGCTGCCCCCCGCCGC
GCTGCCGGGAGCCCCAACGCCGCGCTACCAGGACCTGCTGCAGCTGCTCACCCGCCCCGAGCTGGGACTCCTCGACCAG
TACTGCCAGGGCTTCTGGCGACCGCCGGCCCCTGGCCCCCCCGAACCGCTGGCTGCCCTCAAAGCCAAGGAGCTGCAGG
ACCAGAAGAAGCCAAGGAGCCGCCGGAATCACCCGCCAGAGAGCTGCGGGCACACATGA
CitationGammill LS, Gonzalez C, Bronner-Fraser M. Neuropilin 2/semaphorin 3F signaling is essential for cranial neural crest migration and trigeminal ganglion condensation. Dev Neurobiol. 2007 Jan;67(1):47-56.
CopyrightCopyright © 2010 John Wiley & Sons, Inc. All Rights Reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-36
stage 36
stage 36
stage 36
stage 36
stage 36
stage 36
stage 36
stage 36
Head Mesenchyme
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Rhombomeres
Surface Ectoderm
 

Entry 4

GEISHA IdS3F.Herzog.2005Data SourcePublication
Complete cDNA Template Probeshow
ATGCCCGTGGCCACCGTCCTGCTCTGGGCCACCCTGCTGACCCTGGGCTGGCGGGCAGCCCACGGCAAGGACGGCGTGC
CTCCTACCCCCAGGGTGCAGCTCTCCTTCAAAGAGCTGAAGGCCACCGGCACCGCGCACTTCTTCAACTTCCTGCTCAA
CTCCAGTGACTACCGCATCCTGCTGAAGGACGAGGACCACGACCGCATGTACGTGGGCAGCAAGGACTACGTCCTCTCT
CTGGACCTGCACGACATCAACCGCGAGCCCCTCATCATCCACTGGCCTGCCTCCCAGCAGAGGATCGAGGAGTGCATCC
TGTCGGGCAAGAACAGCAATGGGGAGTGTGGCAACTTCATCCGCCTGATCCAGCCCTGGAACCGGACTCACCTCTACGT
GTGCGGCACCGGCGCCTACAACCCCATCTGCGCCTTCATCAACCGTGGGCGCAAAGCACAGGATTATATCTTCTACCTA
GAGCCGGACAAGCTGGAGTCAGGCAAAGGGAAGTGTTCTTATGACCCCAAAGTGGACACCGTCTCTGCATTGATAAATG
AAGAGCTCTATGCTGGGGTCTACATCGACTTCATGGGCACTGATGCAGCCATCTTCCGCACTATGGGCAAGCAGACAGC
CATGAGGACAGACCAGTACAATTCACGCTGGCTCAACGACCCTGCCTTCGTCCGTGCCCAGCTCATCCCTGACAGCAGC
GAGAGGAATGATGACAAACTCTACTTCTTCTTCCGGGAGAAGTCGGCGGATGCCCCGCTCAGCCCCGGGGTCTATTCCC
GCATCGGGCGCATCTGCCTGAACGACGATGGAGGACACTGCTGCCTGGTGAACAAATGGAGCACCTTCCTGAAGGCCCG
GCTCGTCTGCTCCGTGCCAGGACCCGATGGGATCGAGACGCACTTTGATGAGCTTCAGGACGTCTTCATCCAGCAGACT
CAGGACACCAAGAATCCTGTTATCTACGCCGTCTTCTCCGCATCGGGGTCGGTGTTCAAGGGCTCGGCTGTCTGCGTTT
ACTCCATGGCCGACATCCGCATGGTGTTCAATAGGCCCTTCGCGCACAAGGAGGGTCCCAACTACCAGTGGATGCCCTA
CACGGGCAAAATGCCCTACCCCCGGCCGGGCACCTGCCCCGGGGGGACCTTCACACCCTCCATGAAGTCAACCAAGGAC
TACCCCGACGAAGTGATCAACTTCATGCGCTCTCACCCTCTGATGTACCACGCCGTCTACCCGGCCCACCGGCAGCCTC
TGGTCGTGCGCACCAACGTCAACTACCGCTTCACCACCATCGCTGTTGACCAGGTGGACGCGGCAGATGGGCGCTATGA
GGTGCTTTTCCTGGGCACAGATCGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCCGGGACGACATGGAGACAGAGGAG
CTGATGCTGGAGGAGATCGAGGTGTTCAAGGTGCCAGCACCCATCAAGATGATGACCATCTCCTCCAAGAGGCAACAGC
TTTACGTGTCCTCGGCAGTAGGAGTGACCCACCTGGCCCTGCACCGGTGTGACGTGTATGGAGAAGCCTGTGCTGACTG
CTGCCTGGCCCGCGACCCATACTGTGCCTGGGATGGCAAGGCCTGCAGCCGCTACTCAGCATCCTCCAAGAGGCGGAGC
AGGCGGCAGGACGTCCGGCACGGCAACCCCATGCGCCAGTGCCGAGGCTACAACTCCAATGCCAACAAGAACACGGTGG
AGGCCGTGCAGTACGGGGTGGAGGGCAGCACCGCCTTCCTCGAGTGCCAGCCCCGCTCTCCACAAGCCACCGTCAAATG
GCTGCTGCAGAAGGACAACAGCGACCGACGGAAAGAGCTGCGCACAGAGGGCGGCCGGGCACTGCGGACAGAGCAGGGC
TTGCTGCTGCGTGCCCTGCAGCTCTCCGACAGCGGCCTCTACTCCTGCACCGCCACCGAGAACAACTTCAAGCACACGG
TGACCAAGGTGCAGCTGCGAGTCCTGGCCGCCCGCGCCGTGCACGCCGTCCTGCTGCAAGGCGAGCTGCCCCCCGCCGC
GCTGCCGGGAGCCCCAACGCCGCGCTACCAGGACCTGCTGCAGCTGCTCACCCGCCCCGAGCTGGGACTCCTCGACCAG
TACTGCCAGGGCTTCTGGCGACCGCCGGCCCCTGGCCCCCCCGAACCGCTGGCTGCCCTCAAAGCCAAGGAGCTGCAGG
ACCAGAAGAAGCCAAGGAGCCGCCGGAATCACCCGCCAGAGAGCTGCGGGCACACATGA
CitationHerzog Y, Guttmann-Raviv N, Neufeld G. Segregation of arterial and venous markers in subpopulations of blood islands before vessel formation. Dev Dyn. 2005 Apr;232(4):1047-55.
CopyrightCopyright © 2005 Wiley-Liss, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204258.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
stage 16
stage 16
stage 16
Area Opaca
Blood Islands
Cardinal Veins
Extraembryonic Blood Vessels
Veins
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.14

Mouse

EmageMGI:1096347
EurexpressMGI:1096347
MGI GXDMGI:1096347

Frog

Xenbase940270

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050513-1, ZDB-GENE-050513-2
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