GEISHA - A Chicken Embryo Gene Expression Database
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SHH
sonic hedgehog

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolSHH
Official Full Namesonic hedgehog
CGNC ID49404
also known asShhNC, sonic hedgehog protein|shh unprocessed N-terminal signaling and C-terminal autoprocessing domains|sonic hedgehog homolog, Sonic hedgehog protein precursor, SHH
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204821
PolypeptideNP_990152
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.345
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly42737FBgn0004644
Human6469MIM:120200MIM:600725
Mouse20423ENSMUSG00000002633All phenotypic alleles (28):Spontaneous(1) Chemically induced(8) Radiation induced(1) Targeted, knock-out(4) Targeted, other(14) MGI:98297
Xenopus100487601, 398047488038
Zebrafish30444, 30269ENSDARG00000038867, ENSDARG00000068567ZDB-GENE-980526-41, ZDB-GENE-980526-166ZFIN:ZDB-GENE-980526-41, ZFIN:ZDB-GENE-980526-166
Gene Ontology
Molecular Functioncalcium ion binding, morphogen activity, peptidase activity, signal transducer activity, zinc ion binding
Biological Processanterior/posterior pattern specification, apoptotic signaling pathway, cell-cell signaling, more...embryonic digit morphogenesis, embryonic limb morphogenesis, intein-mediated protein splicing, negative regulation of apoptotic process, polarity specification of anterior/posterior axis, proteolysis, response to retinoic acid
Cellular Componentextracellular region, extracellular space, plasma membrane
Links to other databases
Entrez Gene395615
Ensembl GeneENSGALG00000006379
KEGGgga:395615

Entry 1

GEISHA IdSonic_HedgehogData SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GAATTCGCGGCCGCATCAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGC
GACCTAAAGGCTGCCATTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACAT
AGGAGGAGAGAGAGCTCTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAAT
GCTGCTGTTGACAAGAATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGC
AGGGGCATTGGAAAAAGGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGA
AGACCCTAGGGGCCAGTGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTA
CAACCCTGACATTATTTTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTG
AATGCCCTGGCGATCTCGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCC
ATCACTCCGAGGAATCGCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGG
AATGCTGGCCCGCCTCGCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTC
AAAGCAGAAAACTCAGTGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCA
CCAAGCTGGTGAAGGACCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTT
CCTCACCTTCCTCGACCGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTG
CTACTGACGGCGGCCCACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGG
CGCTCTTCGCCAGCAACGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTC
TGTCCACAGCGTCTCATTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAAC
CGGGTGTTGGCCTCCTGCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTC
AGGGGCTGCTGGCCGCCCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTC
ACGGCTCCTCTACCGCATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGC
TGAGAGTGGCTGGAGAGGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAAAAGCGGCCGCGAATTC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-9
stage 8
stage 8
stage 9
Endoderm, early
Neural Plate/Tube
Notochord
floor plate

Entry 2

GEISHA IdShh.Maas.2004Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationMaas SA, Fallon JF. Isolation of the Chicken Lmbr1 Coding Sequence and Characterization of Its Role During Chick Limb Development. Dev Dyn. 2004 Mar;229(3):520-8.
CopyrightCopyright © 2004 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-22
stage 22
stage 22
Wing Mesenchyme
ZPA zone of polarizing activity

Entry 3

GEISHA IdShh.Prin.2004Data SourcePublication
Complete cDNA Template Probeshow
GAATTCGCGGCCGCATCAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGC
GACCTAAAGGCTGCCATTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACAT
AGGAGGAGAGAGAGCTCTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAAT
GCTGCTGTTGACAAGAATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGC
AGGGGCATTGGAAAAAGGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGA
AGACCCTAGGGGCCAGTGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTA
CAACCCTGACATTATTTTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTG
AATGCCCTGGCGATCTCGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCC
ATCACTCCGAGGAATCGCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGG
AATGCTGGCCCGCCTCGCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTC
AAAGCAGAAAACTCAGTGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCA
CCAAGCTGGTGAAGGACCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTT
CCTCACCTTCCTCGACCGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTG
CTACTGACGGCGGCCCACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGG
CGCTCTTCGCCAGCAACGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTC
TGTCCACAGCGTCTCATTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAAC
CGGGTGTTGGCCTCCTGCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTC
AGGGGCTGCTGGCCGCCCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTC
ACGGCTCCTCTACCGCATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGC
TGAGAGTGGCTGGAGAGGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAAAAGCGGCCGCGAATTC
CitationPrin F, Logan C, D'Souza D, Ensini M, Dhouailly D. Dorsal versus ventral scales and the dorsoventral patterning of chick foot epidermis. Dev Dyn. 2004 Mar;229(3):564-78.
CopyrightWiley-Liss, Inc. 2004
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-39
stage 38
stage 39
stage 39
Feathers/Scutae
Leg Ectoderm
Surface Ectoderm
 

Entry 4

GEISHA IdShh.Hurtado.2006Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationHurtado R, Mikawa T. Enhanced sensitivity and stability in two-color in situ hybridization by means of a novel chromagenic substrate combination. Dev Dyn. 2006 Oct;235(10):2811-6.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
Central Nervous System
Notochord
Floor Plate

Entry 5

GEISHA IdShh.Aglyamova.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationAglyamova GV, Agarwala S. Gene expression analysis of the hedgehog signaling cascade in the chick midbrain and spinal cord. Dev Dyn. 2007 May;236(5):1363-73
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsAccording to the authors, "Digoxigenin- or FL-conjugated antisense riboprobes were prepared from chick cDNAs." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Hensen's Node
 
4-6
stage 4
stage 5
stage 6
Early Mesoderm
Ectoderm
Epiblast
Head Process
Hensen's Node
Notochord
Primitive Streak
Prechordal Plate
7-12
stage 8
stage 8
stage 10
stage 10
stage 10
stage 10
stage 10
stage 10
Central Nervous System
Neural Plate/Tube
Notochord
Spinal Cord
Floor Plate
Floor plate
Rostral
Rostral Floor Plate
floor plate
13-18
stage 13
stage 15
stage 15
stage 16
stage 17
Hindbrain
Isthmus/MHB
Midbrain
Notochord
Floor Plate
Floor plate
Rostral
19-24
stage 22
stage 24
Isthmus/MHB
Spinal Cord
Floor Plate
Rostral
25-30
stage 26
stage 26
stage 26
stage 26
stage 27
stage 30
Hindbrain
Isthmus/MHB
Midbrain
Neural Plate/Tube
Floor Plate
Rostral

Entry 6

GEISHA IdShh.Gimeno.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationGimeno L, Martinez S. Expression of chick Fgf19 and mouse Fgf15 orthologs is regulated in the developing brain by Fgf8 and Shh. Dev Dyn. 2007 Aug;236(8):2285-97.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsAccording to the authors, "Digoxigenin and fluorescein RNA antisense probes for chick SHH gene was prepared according to the instructions of the manufacturer (Roche)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 19
stage 19
stage 19
stage 20
stage 20
stage 20
stage 22
stage 22
stage 24
Diencephalon
Isthmus/MHB
Midbrain
Neural Plate/Tube
basal plates
25-26
stage 26
stage 26
stage 26
Diencephalon
Midbrain
Neural Plate/Tube
basal plates

Entry 7

GEISHA IdShh.Shin.2006Data SourcePublication
Complete cDNA Template Probeshow
GAATTCGCGGCCGCATCAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGC
GACCTAAAGGCTGCCATTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACAT
AGGAGGAGAGAGAGCTCTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAAT
GCTGCTGTTGACAAGAATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGC
AGGGGCATTGGAAAAAGGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGA
AGACCCTAGGGGCCAGTGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTA
CAACCCTGACATTATTTTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTG
AATGCCCTGGCGATCTCGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCC
ATCACTCCGAGGAATCGCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGG
AATGCTGGCCCGCCTCGCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTC
AAAGCAGAAAACTCAGTGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCA
CCAAGCTGGTGAAGGACCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTT
CCTCACCTTCCTCGACCGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTG
CTACTGACGGCGGCCCACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGG
CGCTCTTCGCCAGCAACGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTC
TGTCCACAGCGTCTCATTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAAC
CGGGTGTTGGCCTCCTGCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTC
AGGGGCTGCTGGCCGCCCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTC
ACGGCTCCTCTACCGCATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGC
TGAGAGTGGCTGGAGAGGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAAAAGCGGCCGCGAATTC
CitationShin M, Noji S, Neubüser A, Yasugi S. FGF10 is required for cell proliferation and gland formation in the stomach epithelium of the chicken embryo. Dev Biol. 2006 Jun 1;294(1):11-23. Epub 2006 Apr 17.
CopyrightReprinted from Developmental Biology, 294, Masahiron Shin, Sumihare Noji, Annette Neubüser, and Sadao Yasugl, 11-23, Copyright 2006, with permission from Elsevier. Copyright © 2005 Elsevier Inc. All rights reserved.
CommentsShh was a gift from Dr. T. Nohno, who cloned it using PCR primers similar to Riddle et al. 1993. Their clone sequence is inserted here (Acc. # L28099).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-38
stage 32
stage 37
stage 38
Stomach
proventriculus

Entry 8

GEISHA IdSHH.Franz-Odendaal.2008Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationFranz-Odendaal TA. Toward understanding the development of scleral ossicles in the chicken, Gallus gallus. Dev Dyn. 2008 Nov
CopyrightCopyright © 2009 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204821.1); insert length is 1.7 kb.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-38
stage 35
stage 35
stage 35
stage 38
stage 38
Feathers/Scutae
 

Entry 9

GEISHA IdShh.Tomonari.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationTomonari S, Takagi A, Noji S, Ohuchi H. Expression pattern of the melanopsin-like (cOpn4m) and VA opsin-like genes in the developing chicken retina and neural tissues. Gene Expr Patterns. 2007 Aug;7(7):746-53. Epub 2007 Jun 13.
Copyright"Reprinted from Gene Expression Patterns, Volume number 7, Tomonari S, Takagi A, Noji S, Ohuchi H, Expression pattern of the melanopsin-like (cOpn4m) and VA opsin-like genes in the developing chicken retina and neural tissues.,746-53, Copyright (2007), with permission from Elsevier". Copyright © (2007) Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-14
stage 14
stage 14
stage 14
Diencephalon
Neural Plate/Tube
Notochord
floor plate

Entry 10

GEISHA IdShh.Garcia-Calero.2006Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationGarcía-Calero E, Garda AL, Marín F, Puelles L. Expression of Lrrn1 marks the prospective site of the zona limitans thalami in the early embryonic chicken diencephalon. Gene Expr Patterns. 2006 Oct;6(8):879-85. Epub 2006 Feb 28.
CopyrightReprinted with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "Digoxigenin-labeled RNA probes were prepared from plasmids kindly provided by J.L.R. Rubenstein (Shh)..." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 16
stage 17
stage 18
Diencephalon
Midbrain
Basal Plate
Zona Limitans Thalami
25
stage 25
Diencephalon
Zona Limitans Thalami

Entry 11

GEISHA IdShh.Ha.2003Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationHa AS, Riddle RD. cBlimp-1 expression in chick limb bud development. Gene Expr Patterns. 2003 Jun;3(3):297-300.
CopyrightReprinted from Gene Expr Patterns, Volume 3, Issue 3, Alice S. Ha and Robert D. Riddle, cBlimp-1 expression in chick limb bud development, Pages 297-300, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier Science B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-20
stage 20
Leg Mesenchyme
posterior

Entry 12

GEISHA IdShh.Cheng.2004Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationCheng L, Alvares LE, Ahmed MU, El-Hanfy AS, Dietrich S. The epaxial-hypaxial subdivision of the avian somite. Dev Biol. 2004 Oct 15;274(2):348-69.
CopyrightReprinted from Developmental Biology, Volume 274, Issue 2, Louise Cheng, Lúcia E. Alvares, Mohi U. Ahmend, Amira S. El-Hanfy, and Susanne Dietrich, The epaxial-hypaxial subdivision of the avian somite, Pages 348-369, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsAuthors indicate they used the same probe as Johnson et al., 1994. No probe information is listed in that paper. As information provided is insufficient to verify exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (Acc# NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7
stage 7
Notochord
Spinal Cord
Multiple labels

Entry 13

GEISHA IdShh.Lobjois.2004Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationLobjois V, Benazeraf B, Bertrand N, Medevielle F, Pituello F. Specific regulation of cyclins D1 and D2 by FGF and Shh signaling coordinates cell cycle progression, patterning, and differentiation during early steps of spinal cord development. Dev Biol. 2004 Sep 15;273(2):195-209.
CopyrightReprinted from Developmental Biology, Volume 273, Issue 2, Valérie Lobjois, Bertrand Benazeraf, Nicolas Betrand, François Medevielle and Fabienne Pituello, Specific regulation of cyclins D1 and D2 by FGF and Shh signaling coordinates cell cycle progression, patterning, and differentiation during early steps of spinal cord development, Pages 195-209, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsAuthors said: chicken Gli 1 cDNA (2.2 kb), Shh cDNA (1.6 kb), and Patched1 cDNA (802 bp), gifts from C. Tabin. As information provided is insufficient to verify exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (Acc# NM_204821.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Notochord
 

Entry 14

GEISHA IdShh.Maden.2007Data SourcePublication
Complete cDNA Template Probeshow
CCCACCAGTGGCCAGGCATTCTTTGCCAGCAATGTGAAGCCTGGCCAACGTGTNTATGTGCTGGGAGAGGGCGGGCGGC
AGCTGCTACCTGCATCTGTCCACAGCGTCTCATTGCGGGAGGAGGCATCCGGTGCATACGCCCCGCTCACCGCCCAAGG
CACCATCCTCATCAACCGGGTGCTGACCTCCTGCTACGCTGTTATCGAGGAGCACAGTTGGGCCCATTGGGCCTTTGCA
CCATTCCGCTTGGCTCAGGGGCTGCTGGCTGCCCTNTGCCCAGATGGGGCCATCCCTTTTGCCGGCACCACCACCACCG
GCATCCATTGGTACTCACGGCTCCTTTACCACATCGGCAGCTGGGTGCTGGATGGTGATGCACTGCACCCACTGGGCAT
GGTGGCACCGGCCAGCTGAGAGCGGCTGGATAGGGGCAGAGACAGAGTGTGGGAGTGAGAGAGAGAAAAAAAAA
CitationMaden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A. (2007). Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo. Int J Dev Biol. 2007;51(3):191-200.
Copyright"Reprinted from Int. J. Dev. Biol., 51, Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A, Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo, 191-200, Copyright (2007), with permission from Copyright © 2007 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #AF022882). Images and sequence given are quail, but map shown is chick.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 9
stage 10
Head Process
Neural Plate/Tube
Notochord
Floor plate
Quail
13-18
stage 18
Diencephalon
Hindbrain
Midbrain
Notochord
Floor plate
Quail
31-44
stage 44
Diencephalon
Forebrain
Hindbrain
Midbrain
Somites
Fig. 3. All images for comparison.
Quail

Entry 15

GEISHA IdShh.Bardot.2004Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationBardot B, Lecoin L, Fliniaux I, Huillard E, Marx M, Viallet JP. Drm/Gremlin, a BMP antagonist, defines the interbud region during feather development. Int J Dev Biol. 2004;48(2-3):149-56.
Copyright"Reprinted from Int. J. Dev. Biol., 48, Bardot B, Lecoin L, Fliniaux I, Huillard E, Marx M, Viallet JP, Drm/Gremlin, a BMP antagonist, defines the interbud region during feather development, 149-56, Copyright (2004), with permission from Copyright © 2004 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
Feathers/Scutae
Wing
 
31-44
stage 44
Feathers/Scutae
Wing
comparison to other probes

Entry 16

GEISHA IdShh.Christ.2002Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationChrist B, Brand-Saberi B. Limb muscle development. Int J Dev Biol. 2002;46(7):905-14.
Copyright"Reprinted from Int. J. Dev. Biol., 46, Christ B, Brand-Saberi B, Limb muscle development, 905-14, Copyright (2002), with permission from Copyright © 2002 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 23
Limb Buds
 
31-44
stage 44
Limb Buds
Compare with other genes

Entry 17

GEISHA IdShh.Pearse.2001Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationPearse RV, Vogan KJ, Tabin CJ. Ptc1 and Ptc2 transcripts provide distinct readouts of Hedgehog signaling activity during chick embryogenesis. Dev Biol. 2001 Nov 1;239(1):15-29.
CopyrightReprinted with permission from Elsevier. Copyright © 2001 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "Digoxigenin (Dig)-labeled antisense RNA probes for Shh were generated from linearized DNA templates as described previously (Riddle et al., 1993)." As information provided was insufficient to verify exact sequence used to synthesize probe,the sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 5
Head Process
Hensen's Node
FIG. 3. Comparison of Shh, Ptc1, and Ptc2 expression at stage 5+.
Left side of Hensen's node.
19-24
stage 19
stage 20
stage 21
stage 22
stage 23
stage 23
stage 23
stage 24
stage 24
Endoderm
Gut
Limb Buds
Neural Plate/Tube
Notochord
Wing
Wing Mesenchyme
Endodermal lining of the gut.
Floor Plate
Zone of Polarizing Activity
25-30
stage 25
stage 25
stage 30
Wing Mesenchyme
FIG. 2. Developmental overview of chick Ptc2 expression, showing whole-mount and section in situ hybridizations with probes directed against Ptc2, Ptc1, or Shh.
FIG. 4. Comparison of Shh, Ptc1, and Ptc2 expression during early limb bud development.

Entry 18

GEISHA IdShh.Agarwala.2005Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationAgarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsAccording to the authors, "Digoxigenin (DIG)- and fluorescein-labeled riboprobes were synthesized from chick cDNA plasmids..." As information provided was insufficient to verify exact sequence used to synthesize probe,the sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
stage 18
Midbrain
Neural Plate/Tube
Spinal Cord
Floor Plate
Lateral Floor Plate
Medial Floor Plate
Notochord
Rostral Floor Plate
19-24
stage 22
stage 22
Midbrain
Neural Plate/Tube
Spinal Cord
Floor Plate
Notochord
Rostral Floor Plate
25-28
stage 26
stage 26
stage 28
Midbrain
Neural Plate/Tube
Spinal Cord
Medial Floor Plate
Rostral Floor Plate

Entry 19

GEISHA IdSHH.Scherz.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationScherz PJ, McGlinn E, Nissim S, Tabin CJ. Extended exposure to Sonic hedgehog is required for patterning the posterior digits of the vertebrate limb.Dev Biol. 2007 Aug 15;308(2):343-54. Epub 2007 May 31.
CopyrightReprinted with permission from Elsevier. Copyright 2007 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_204821.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 21
stage 24
stage 24
Leg
 

Entry 20

GEISHA IdShh.Vieira.2005Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationVieira C, Garda AL, Shimamura K, Martinez S. Thalamic development induced by Shh in the chick embryo. Dev Biol. 2005 Aug 15;284(2):351-63.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsAccording to the authors, "Digoxigenin and fluorescein-labeled RNA probes were prepared from plasmids kindly provided by J.L.R. Rubenstein." As information provided was insufficient to verify exact sequence used to synthesize probe,the sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
stage 17
Forebrain
Midbrain
mesencephalic and diencephalic basal plates
19-24
stage 19
stage 23
stage 23
stage 23
stage 23
Central Nervous System
Forebrain
Midbrain
mesencephalic and diencephalic basal plates
zona limitans intrathalamica
25
stage 25
stage 25
stage 25
stage 25
stage 25
Central Nervous System
Forebrain
Midbrain
mesencephalic and diencephalic basal plates
zona limitans intrathalamica
zona limitans intrathalamica.

Entry 21

GEISHA IdShh.Nissim.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationNissim S, Allard P, Bandyopadhyay A, Harfe BD, Tabin CJ. Characterization of a novel ectodermal signaling center regulating Tbx2 and Shh in the vertebrate limb. Dev Biol. 2007 Apr 1;304(1):9-21.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in the publication to verify the exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
Limb Buds
limb on left
25
stage 25
Limb Buds
limb on left

Entry 22

GEISHA IdShh.Liu.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationLiu G, Moro A, Zhang JJ, Cheng W, Qiu W, Kim PC. The role of Shh transcription activator Gli2 in chick cloacal development. Dev Biol. 2007 Mar 15;303(2):448-60. Epub 2006 Dec 15
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
Hindgut
Midgut
 
19-24
stage 23
stage 23
Hindgut
Leg
Notochord
Spinal Cord
cloacal endoderm
floor plate of neural tube, ZPA, cloaca
25-26
stage 26
stage 26
Hindgut
Neural Plate/Tube
Notochord
floor plate, cloaca

Entry 23

GEISHA IdShh.Haworth.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationHaworth KE, Wilson JM, Grevellec A, Cobourne MT, Healy C, Helms JA, Sharpe PT, Tucker AS. Sonic hedgehog in the pharyngeal endoderm controls arch pattern via regulation of Fgf8 in head ectoderm. Dev Biol. 2007 Mar 1;303(1):244-58.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsAuthors indicate Shh was linearised with Sal1 and transcribed with Sp6. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 11
stage 11
Head Process
Notochord
Oral Pharynx
Pharynx
Double label, SHH red, FGF8 purple
13-15
stage 15
Head Process
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Pharynx
 

Entry 24

GEISHA IdShh.Zhang.2001Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationZhang XM, Yang XJ (2001). Temporal and spatial effects of Sonic hedgehog signaling in chick eye morphogenesis. Dev Biol. 2001 May 15;233(2):271-90.
CopyrightCopyright © 2001 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 11
stage 12
Eye
Forebrain
Foregut
Mesoderm
Optic Vesicles
Prechordal Mesoderm
Primitive Foregut
Ventral Forebrain
13-18
stage 13
stage 14
stage 18
Diencephalon
Forebrain
Ventral Diencephalon
Ventral Forebrain
19-24
stage 24
stage 24
Retina
 

Entry 25

GEISHA IdShh.Levin.1995Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationLevin M, Johnson RL, Stern CD, Kuehn M, Tabin C (1995). A molecular pathway determining left-right asymmetry in chick embryogenesis. Cell. 1995 Sep 8;82(5):803-14.
CopyrightCopyright © 1995 Elsevier Inc. All Rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 4
stage 4
stage 4
Head Process
Hensen's Node
 
7-12
stage 7
Hensen's Node
 
31-44
stage 44
stage 44
stage 44
stage 44
  

Entry 26

GEISHA IdShh.Vasiliauskas.1999Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationVasiliauskas D, Hancock S, Stern CD. SWiP-1: novel SOCS box containing WD-protein regulated by signalling centres and by Shh during development. Mech Dev. 1999 Apr;82(1-2):79-94
CopyrightCopyright © 1999 Elsevier Science Ireland Ltd. All rights reserved
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-34
stage 34
stage 34
stage 34
Eye
Feathers/Scutae
Surface Ectoderm
Scleral Papillae

Entry 27

GEISHA IdShh.McKinnell.2004Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationMcKinnell IW, Turmaine M, Patel K (2004). Sonic Hedgehog functions by localizing the region of proliferation in early developing feather buds. Dev Biol. 2004 Aug 1;272(1):76-88.
CopyrightCopyright © 2004 Published by Elsevier Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 30
stage 30
Feathers/Scutae
Control
31-33
stage 31
stage 33
stage 33
Feathers/Scutae
Control

Entry 28

GEISHA IdShh.Bok.2005Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationBok J, Bronner-Fraser M, Wu DK. Role of the hindbrain in dorsoventral but not anteroposterior axial specification of the inner ear. Development. 2005 May;132(9):2115-24. Epub 2005 Mar 23.
CopyrightCopyright for articles in Development are retained by the authors. Permission granted by MBF.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204821).
no images

Entry 29

GEISHA IdShh.Garcia-Castro.2000Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationGarcía-Castro MI, Vielmetter E, Bronner-Fraser M. N-Cadherin, a cell adhesion molecule involved in establishment of embryonic left-right asymmetry. Science. 2000 May 12;288(5468):1047-51.
CopyrightCopyright © 2000, The American Association for the Advancement of Science
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
stage 3
Head Process
Hensen's Node
Primitive Streak
 
4
stage 4
stage 4
Hensen's Node
Primitive Streak
Shh appears in chick embryo during gastrulation, prior to cell differentiation; therefore, no anatomy is available.

Entry 30

GEISHA IdSHH.Quinlan.2009Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationQuinlan R, Graf M, Mason I, Lumsden A, Kiecker C. Complex and dynamic patterns of Wnt pathway gene expression in the developing chick forebrain. Neural Dev. 2009 Sep 4;4:35.
CopyrightCopyright © 2009 Quinlan et al; licensee BioMed Central Ltd. [This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.]
Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
stage 24
stage 24
Forebrain
Hindbrain
Midbrain
SHH in red, double labeled

Entry 31

GEISHA IdShh.Garcia-Lopez.2009Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationGarcía-López R, Soula C, Martínez S. Expression analysis of Sulf1 in the chick forebrain at early and late stages of development. Dev Dyn. 2009 Sep;238(9):2418-29.
CopyrightCopyright © 2009 John Wiley & Sons, Inc. All Rights Reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-26
stage 26
Neural Plate/Tube
 

Entry 32

GEISHA IdSHH.Agarwala.2001Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationAgarwala S, Sanders TA, Ragsdale CW. Sonic hedgehog control of size and shape in midbrain pattern formation. Science. 2001 Mar 16;291(5511):2147-50. Epub 2001 Mar 1.
Copyright© 2011 American Association for the Advancement of Science. All Rights Reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13
stage 13
stage 13
stage 13
Forebrain
Hindbrain
Isthmus/MHB
Midbrain
Neural Plate/Tube
FP (hindbrain floor plate)
rFP (rostral floor plate)- ventral longitudinal zone of the neural tube

Entry 33

GEISHA IdSHH.Agarwala.2002Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationAgarwala S, Ragsdale CW. A role for midbrain arcs in nucleogenesis. Development. 2002 Dec;129(24):5779-88.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Ragsdale.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204821.1). Two-color whole-mount in situ hybridization was carried out on chick brain with digoxigenin- and fluorescein-labeled riboprobes synthesized from chick cDNA plasmids for SHH
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Midbrain
Double label
25-26
stage 26
stage 26
stage 26
stage 26
Ectoderm
Midbrain
Double label

Entry 34

GEISHA IdSHH.Parkinson.2010Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationParkinson N, Collins MM, Dufresne L, Ryan AK. Expression patterns of hormones, signaling molecules, and transcription factors during adenohypophysis development in the chick embryo. Dev Dyn. 2010 Apr;239(4):1197-210.
CopyrightCopyright © 2010 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 21
stage 21
Diencephalon
Pituitary (Rudiment)
 
25-30
stage 28
Diencephalon
Oral Pharynx
oe, oral epithelium
31-32
stage 32
Diencephalon
Pituitary (Rudiment)
 

Entry 35

GEISHA IdSHH.Halilagic.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationHalilagic A, Ribes V, Ghyselinck NB, Zile MH, Dollé P, Studer M. Retinoids control anterior and dorsal properties in the developing forebrain. Dev Bio 2007 Mar 1;303(1):244-58
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821.1). Images are quail, but sequence and map shown are chick.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19
stage 19
stage 19
Diencephalon
Hindbrain
Midbrain
Telencephalon
hy, hypothalamus
quail embryo
zli, zona limitas intrathalamica

Entry 36

GEISHA IdSHH.Mao.2009Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationMao J, McGlinn E, Huang P, Tabin CJ, McMahon AP. Fgf-dependent Etv4/5 activity is required for posterior restriction of Sonic Hedgehog and promoting outgrowth of the vertebrate limb. Dev Cell. 2009 Apr;16(4):600-6.
Copyrightdon't have permission yet
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-17
stage 17
stage 17
stage 17
Limb Buds
ST 17/18
double-hybridization: SHH expression (black arrow), FGF8 expression (white arrow)

Entry 37

GEISHA IdSHH.Luo.2006Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationLuo J, Ju MJ, Redies C. Regionalized cadherin-7 expression by radial glia is regulated by Shh and Pax7 during chicken spinal cord development. Neuroscience. 2006 Nov 3
Copyright© 2006 IBRO. Published by Elsevier Ltd. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 23
stage 23
Spinal Cord
 
25-28
stage 28
Spinal Cord
 

Entry 38

GEISHA IdSHH.Dunn.2011Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationDunn IC, Paton IR, Clelland AK, Sebastian S, Johnson EJ, McTeir L, Windsor D, Sherman A, Sang H, Burt DW, Tickle C, Davey MG. The chicken polydactyly (Po) locus causes allelic imbalance and ectopic expression of Shh during limb development. Dev Dyn. 2011 May;240(5):1163-72.
CopyrightCopyright © 2011 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
stage 24
Limb Buds
Somites
 
25-26
stage 25
stage 25
stage 25
stage 26
Limb Buds
Somites
Unlabeled
 

Entry 39

GEISHA IdSHH.Grevellec.2011Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationGrevellec A, Graham A, Tucker AS. Shh signalling restricts the expression of Gcm2 and controls the position of the developing parathyroids. Dev Biol. 2011 May 15;353(2):194-205. Epub 2011 Feb 22.
CopyrightCopyright © 2011 Elsevier Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
stage 16
Foregut
Pharyngeal Arches and Clefts
 
19-21
stage 21
stage 21
stage 21
stage 21
Endoderm
Pharyngeal Arches and Clefts
 

Entry 40

GEISHA IdSHH.Chambers.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationChambers D, Wilson L, Maden M, Lumsden A. RALDH-independent generation of retinoic acid during vertebrate embryogenesis by CYP1B1. Development. 2007 Apr;134(7):1369-83.
Copyright© 2007
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
stage 16
stage 16
stage 16
stage 16
stage 16
Hindbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
control embryo
flat-mount of (Ba) embryo
normal embryo

Entry 41

GEISHA IdSHH.Gros.2010Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationGros J, Feistel K, Viebahn C, Blum M, Tabin CJ. Cell movements at Hensen’s node establish Left/Right asymmetric gene expression in the chick. Science. 2009 May 15; 324(5929): 941–944.
Copyright© 2012 American Association for the Advancement of Science. All Rights Reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Hensen's Node
 
4-5
stage 4
stage 5
stage 5
stage 5
stage 5
Head Process
Hensen's Node
 

Entry 42

GEISHA IdSHH.Golden.1999Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationGolden JA, Bracilovic A, McFadden KA, Beesley JS, Rubenstein JL, Grinspan JB. Ectopic bone morphogenetic proteins 5 and 4 in the chicken forebrain lead to cyclopia and holoprosencephaly. Proc Natl Acad Sci U S A. 1999 Mar 2;96(5):2439-44.
CopyrightCopyright © 2012 National Academy of Sciences. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204821.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-23
stage 23
stage 23
Forebrain
Head Process
Neural Plate/Tube
Notochord
floor plate

Entry 43

GEISHA IdSHH.Kolpak.2005Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationKolpak A, Zhang J, Bao ZZ Sonic Hedgehog Has a Dual Effect on the Growth of Retinal Ganglion Axons Depending on Its Concentration. J Neurosci. 2005 March 30; 25(13): 3432–3441.
CopyrightCopyright © 2012 by the Society for Neuroscience
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204821.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
stage 24
Retina
 
25-30
stage 27
stage 29
Retina
 
31-35
stage 31
stage 35
stage 35
Retina
 

Entry 44

GEISHA IdSHH.Tapadia.2005Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationTapadia MD, Cordero DR, Helms JA. It's all in your head: new insights into craniofacial development and deformation. J Anat. 2005 November; 207(5): 461–477.
CopyrightCopyright © 2005 The Author Journal compilation © 2005 Anatomical Society of Great Britain and Ireland
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
Neural Plate/Tube
 
13-18
stage 15
stage 17
Diencephalon
Mesencephalon
Metencephalon
Telencephalon
 
19-24
stage 20
stage 20
stage 20
Diencephalon
Pharyngeal Arches and Clefts
Surface Ectoderm
Telencephalon
Red is SHH, facial ectoderm
facial ectoderm
25-30
stage 25
stage 25
Diencephalon
Neural Plate/Tube
Pharyngeal Arches and Clefts
Surface Ectoderm
Telencephalon
facial ectoderm
31-41
stage 41
stage 41
  

Entry 45

GEISHA IdSHH.Brito.2006Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationJosé M. Brito, Marie-Aimée Teillet, Nicole M. Le Douarin. An early role for Sonic hedgehog from foregut endoderm in jaw development: Ensuring neural crest cell survival. Proc Natl Acad Sci U S A. 2006 August 1; 103(31): 11607–11612.
CopyrightCopyright © 2006 by The National Academy of Sciences of the USA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 8
stage 9
stage 9
stage 9
stage 9
stage 9
stage 9
stage 9
stage 9
stage 9
Endoderm
Foregut
Gut
Neural Plate/Tube
HH stage 8+
HH stage 9+
HH stage 9-
19-21
stage 21
stage 21
  

Entry 46

GEISHA IdSHH.Davey.2006Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationDavey MG, Paton IR, Yin Y, Schmidt M, Bangs FK, Morrice DR, Smith TG, Buxton P, Stamataki D, Tanaka M, Münsterberg AE, Briscoe J, Tickle C, Burt DW. The chicken talpid3 gene encodesa novel protein essentialfor Hedgehog signaling. Genes Dev. 2006 May 15; 20(10): 1365–1377.
CopyrightCopyright © 2006, Cold Spring Harbor Laboratory Press
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-20
stage 19
stage 19
stage 20
stage 20
Limb Buds
Neural Plate/Tube
Notochord
 

Entry 47

GEISHA IdSHH.Psychoyos.2008Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationPsychoyos D, Finnell R. Double Whole Mount in situ Hybridization of Early Chick Embryos. J Vis Exp. 2008; (20): 904.
CopyrightCopyright © 2008, Journal of Visualized Experiments
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-8
stage 8
stage 8
Neural Plate/Tube
Notochord
 

Entry 48

GEISHA IdSHH.Fisher.2008Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationFisher ME, Clelland AK, Bain A, Baldock RA, Murphy P, Downie H, Tickle C, Davidson DR, Buckland RA. Integrating technologies for comparing 3D gene expression domains in the developing chick limb. Dev Biol. 2008 May 1;317(1):13-23. Epub 2008 Feb 7.
CopyrightCopyright © 2008 Elsevier Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204821.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-23
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 23
stage 23
stage 23
Gut
Leg
Limb Buds
Neural Plate/Tube
Notochord
Wing
From Dublin
From Dundee
From Edinburgh
double label
double labeled
floor plate, ZPA

Entry 49

GEISHA IdSHH.Lancman.2006Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationLancman JJ, Caruccio NC, Harfe BD, Pasquinelli AE, Schageman JJ, Pertsemlidis A, Fallon JF. Analysis of the regulation of lin-41 during chick and mouse limb development. Dev Dyn. 2005 Dec;234(4):948-60.
CopyrightCopyright © 2005 Wiley-Liss, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 20
stage 24
stage 24
Leg
 

Entry 50

GEISHA IdSHH.WangS.2004Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationWang S, Yu X, Zhang T, Zhang X, Zhang Z, Chen Y. Chick Pcl2 regulates the left-right asymmetry by repressing Shh expression in Hensen's node. Development. 2004 Sep;131(17):4381-91. Epub 2004 Aug 4.
Copyrightcopyright 2004 to the authors. Published by the Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204821.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Hensen's Node
Notochord
 
7-11
stage 11
stage 11
Hensen's Node
 

Entry 51

GEISHA IdSHH.Tao.2002Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationTao H, Yoshimoto Y, Yoshioka H, Nohno T, Noji S, Ohuchi H. FGF10 is a mesenchymally derived stimulator for epidermal development in the chick embryonic skin. Mech Dev. 2002 Aug;116(1-2):39-49.
CopyrightCopyright © 2012 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204821.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 20
stage 20
Feathers/Scutae
Leg
 
31
stage 31
stage 31
Feathers/Scutae
 

Entry 52

GEISHA IdSHH.Katsu.2012Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationKatsu K, Tokumori D, Tatsumi N, Suzuki A, Yokouchi Y. BMP inhibition by DAN in Hensen's node is a critical step for the establishment of left-right asymmetry in the chick embryo. Dev Biol. 2012 Mar 1;363(1):15-26.
CopyrightCopyright © 2012. Published by Elsevier Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
stage 6
Hensen's Node
control embryo

Entry 53

GEISHA IdSHH.Senthinathan.2012Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationSenthinathan B, Sousa C, Tannahill D, Keynes R. The generation of vertebral segmental patterning in the chick embryo. J Anat. 2012 Jun;220(6):591-602.
Copyright© 2012 The Authors. Journal of Anatomy © 2012 Anatomical Society.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-29
stage 29
stage 29
Notochord
 

Entry 54

GEISHA IdSHH.Ferran.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationFerran JL, Sánchez-Arrones L, Sandoval JE, Puelles L. A model of early molecular regionalization in the chicken embryonic pretectum. J Comp Neurol. 2007 Dec 1;505(4):379-403.
CopyrightCopyright © 1999–2012 John Wiley & Sons, Inc. All Rights Reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
stage 16
Diencephalon
Hypothalamus
DMB, diencephalic-mesencephalic boundary(arrow)
ZLI, zona limitans intrathalamica

Entry 55

GEISHA IdSHH.Wade.2012Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationWade C, Brinas I, Welfare M, Wicking C, Farlie PG. Twist2 contributes to termination of limb bud outgrowth and patterning through direct regulation of Grem1. Dev Biol. 2012 Oct 1;370(1):145-53.
CopyrightCopyright © 2012 Elsevier Inc. All rights reserved
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
stage 25
stage 25
stage 25
Leg
Left side: control hindlimb
Left side: control hindlimb;
double in situ: Shh(blue); FGF8(brown)

Entry 56

GEISHA IdSHH.Tsikolia.2012Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CommentsAccording to the authors, "Digoxigenin-labeled mRNA probes for nodal, shh, fgf8 were produced using the plasmid DNAs previously published ( Boettger et al., 1999, Essner et al., 2002 and Levin et al., 1995)" As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 4
stage 5
stage 5
stage 5
stage 5
stage 5
stage 6
Epiblast
Hensen's Node
Lateral Plate Mesoderm
Primitive Streak
HH4+ stage embryo
HH5+ stage embryo
HH5- stage embryo

Entry 57

GEISHA IdSHH.Richardson.2011Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationRichardson J, Shono T, Okabe M and Graham A. The presence of an embryonic opercular flap in amniotes. PLoS One. 2012; 7(9): e44903. Published online 2012 September 11.
CopyrightPLoS One. 2012; 7(9): e44903. Published online 2012 September 11.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
  
19-23
stage 23
Head Mesenchyme
Notochord
Pharyngeal Arches and Clefts
 

Entry 58

GEISHA IdSHH.Mercier.2012Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationMercier S, David V, Ratié L, Gicquel I, Odent S, Dupé V.. NODAL and SHH dose-dependent double inhibition promotes an HPE-like phenotype in chick embryos. Dis Model Mech. 2013 March; 6(2): 537–543. Published online 2012 December 20.
CopyrightCopyright © 2013. Published by The Company of Biologists Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial Share Alike License (http://creativecommons.org/licenses/by-ncsa/ 3.0), which permits unrestricted non-commercial use, distribution and reproduction in any medium provided that the original work is properly cited and all further distributions of the work or adaptation are subject to the same Creative Commons License terms.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205066.1 NM_204821.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Head Mesenchyme
 

Entry 59

GEISHA IdSHH.Guinazu.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationGuinazu MF, Chambers D, Lumsden A, Kiecker C. Tissue interactions in the developing chick diencephalon. Neural Dev. 2007 Nov 13;2:25.
CopyrightCopyright © 2007 Guinazu et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204821.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
Notochord
 
13-18
stage 14
stage 15
stage 18
Diencephalon
Head Process
Notochord
HH Stage 18.5
19-23
stage 22
stage 22
stage 23
stage 23
Diencephalon
Head Process
Notochord
 

Entry 60

GEISHA IdSHH.Hirashima.2008Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationHirashima M, Kobayashi T, Uchikawa M, Kondoh H, Araki M. Anteroventrally localized activity in the optic vesicle plays a crucial role in the optic development. Dev Biol. 2008 May 15;317(2):620-31. doi: 10.1016/j.ydbio.2008.03.010. Epub 2008 Mar 20.
CopyrightCopyright © 2008 Elsevier Inc. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204821.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
stage 11
Head Process
Notochord
 

Entry 61

GEISHA IdSHH.Manning.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationManning L, Ohyama K, Saeger B, Hatano O, Wilson SA, Logan M, Placzek M. Regional morphogenesis in the hypothalamus: a BMP-Tbx2 pathway coordinates fate and proliferation through Shh downregulation. Dev Cell. 2006 Dec;11(6):873-85.
CopyrightCopyright © 2006 Elsevier Inc. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204821.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 10
stage 10
stage 10
Head Process
Hypothalamus
Notochord
 
13-18
stage 13
stage 14
stage 15
stage 15
stage 16
stage 16
stage 17
stage 18
stage 18
stage 18
stage 18
Diencephalon
Hypothalamus
 

Entry 62

GEISHA IdSHH.Marcucio.2005Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationMarcucio RS, Cordero DR, Hu D, Helms JA. Molecular interactions coordinating the development of the forebrain and face. Dev Biol. 2005 Aug 1;284(1):48-61.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 12
Forebrain
Pharyngeal Arches and Clefts
buccopharyngeal membrane
13-18
stage 17
Diencephalon
Telencephalon
 
19-20
stage 20
stage 20
stage 20
stage 20
Diencephalon
Pharyngeal Arches and Clefts
Telencephalon
Stage 20+
control embryo
facial ectoderm
fe: facial ectoderm
maxillary process
all
 
 
 
 
  

Entry 63

GEISHA IdSHH.Tzahor.2003Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationTzahor E, Kempf H, Mootoosamy RC, Poon AC, Abzhanov A, Tabin CJ, Dietrich S, Lassar AB. Antagonists of Wnt and BMP signaling promote the formation of vertebrate head muscle. Genes Dev. 2003 Dec 15;17(24):3087-99.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. #NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-17
stage 17
stage 17
stage 17
Pharyngeal Arches and Clefts
 

Entry 64

GEISHA IdSHH.Chen.1996Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationChen Y1, Dong D, Kostetskii I, Zile MH. Hensen's node from vitamin A-deficient quail embryo induces chick limb bud duplication and retains its normal asymmetric expression of Sonic hedgehog (Shh). Biol. 1996 Jan 10;173(1):256-64.
CopyrightCopyrightq1996 by Academic Press, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (Acc. # NM_204269.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 5
stage 6
Head Process
Headfold
Hensen's Node
floor plate
quail embryo
quail embryos
7
stage 7
Headfold
Somites
quail embryo

Entry 65

GEISHA IdSHH.Ratie.2013Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationLeslie Ratié, Michelle Ware, Frédérique Barloy-Hubler, Hélène Romé, Isabelle Gicquel, Christèle Dubourg, Véronique David and Valérie Dupé. Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development. Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25.
Copyright© 2013 Ratié et al.; licensee BioMed Central Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (ACC. # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-14
stage 14
stage 14
stage 14
stage 14
stage 14
stage 14
stage 14
Hypothalamus
Double Labeled ISH: ASCL1, blue; SHH, red
Double Labeled ISH: HEY1, blue; SHH, red
Double Labeled ISH: TAGLN3, blue; SHH, red

Entry 66

GEISHA IdSHH.Ware.2014Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationWare M, Hamdi-Rozé H and Dupé V (2014) Notch signaling and proneural genes work together to control the neural building blocks for the initial scaffold in the hypothalamus. Front Neuroanat. 2014 Dec 2;8:140. doi: 10.3389/fnana.2014.00140.
CopyrightCopyright © 2014 Ware, Hamdi-Rozé and Dupé
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence was obtained from NCBI (Acc. # NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-15
stage 15
stage 15
stage 15
stage 15
Hypothalamus
Double labeled In Situ: Shh (red), Ascl1 probe (purple)
Double labeled In Situ: Shh (red), Hey1 probe (purple)
Double labeled In Situ: Shh (red), Tagln3 probe (purple)

Entry 67

GEISHA IdShh.Abzhanov.2004Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationAbzhanov A, Tabin CJ. Shh and Fgf8 act synergistically to drive cartilage outgrowth during cranial development. Dev Biol 2004 Sep 1;273(1):134-48.
CopyrightCopyright © 2004 Elsevier Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the complete sequence was obtained from NCBI (acc # NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-36
stage 36
stage 36
Face Mesenchyme
beak epithelium, mesenchyme dorsal in the upper jaw, and ventral in the lower jaw

Entry 68

GEISHA IdShh.Abzhanov.2007Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationAbzhanov, A., Cordero, D. R., Sen, J., Tabin, C. J. and Helms, J. A. Cross–regulatory interactions between Fgf8 and Shh in the avian frontonasal prominence. Congenit Anom (Kyoto). 2007 Dec;47(4):136-48.
CopyrightCopyright © 2007 The Authors, Journal compilation © 2007 Japanese Teratology Society
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (acc # NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 15
stage 15
stage 15
Diencephalon
Pharynx
Unlabeled
Shh is not detected in facial ectoderm.
19-24
stage 20
stage 20
stage 22
stage 22
Diencephalon
Pharynx
Surface Ectoderm
Telencephalon
Shh expression is first detected at stage 20 in the ventral facial ectoderm.
25
stage 25
stage 25
stage 25
Diencephalon
Pharynx
Surface Ectoderm
Telencephalon
 

Entry 69

GEISHA IdShh.Cauthen.2001Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationCauthen CA, Berdougo E, Sandler J, Burrus LW. Comparative analysis of the expression patterns of Wnts and Frizzleds during early myogenesis in chick embryos. Mech Dev. 2001 Jun;104(1-2):133-8.
CopyrightCopyright © 2001 Elsevier Science Ireland Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
Neural Plate/Tube
Notochord
Somatic Mesoderm
 
31-44
stage 44
  

Entry 70

GEISHA IdShh.Young.2010Data SourcePublication
Complete cDNA Template Probeshow
CACATCCACTGCTCCGTCAAAGCAGAAAACTCAGTGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGC
ACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGACCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCG
GCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CitationYoung NM, Chong HJ, Hu D, Hallgrímsson B, Marcucio RS. Quantitative analyses link modulation of sonic hedgehog signaling to continuous variation in facial growth and shape. Development. 2010 Oct;137(20):3405-9.
Copyrightcopyright © 2010. Published by The Company of Biologists Ltd
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Young et al. 2010.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-27
stage 27
Face Mesenchyme
 
all
 
  

Entry 71

GEISHA IdShh.Pickering.2019Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationPickering J, Chinnaiya K, Towers M. An autoregulatory cell cycle timer integrates growth and specification in chick wing digit development. Elife. 2019 Sep 23;8. pii: e47625. DOI: 10.7554/eLife.47625.
CopyrightCopyright © 2019, Pickering et al.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
ZPA
 
25
stage 25
ZPA
 
all
 
  

Entry 72

GEISHA IdShh.Sjödal.2008Data SourcePublication
Complete cDNA Template Probeshow
CAGACCCTTTTTGTCTCTCGATTGCTGTCTCCCGACCAAACTCCGATGTGTTCCGTTATCAGCGACCTAAAGGCTGCCA
TTCCAGCACCTGTCTTGCTAGGGATCGGTGGATAGTATACGATCAGAAAGCAGACAAGGACATAGGAGGAGAGAGAGCT
CTAGAGAGACAGCCAGGGATAGGCACAGAGAGCTGTGAAGTAATTGGATTCAATGGTCGAAATGCTGCTGTTGACAAGA
ATTCTCTTGGTGGGCTTCATCTGCGCTCTTTTAGTCTCCTCTGGGCTGACTTGTGGACCAGGCAGGGGCATTGGAAAAA
GGAGGCACCCCAAAAAGCTGACCCCGTTAGCCTATAAGCAGTTTATTCCCAATGTGGCAGAGAAGACCCTAGGGGCCAG
TGGAAGATATGAAGGGAAGATCACAAGAAACTCCGAGAGATTTAAAGAACTAACCCCAAATTACAACCCTGACATTATT
TTTAAGGATGAAGAGAACACGGGAGCTGACAGACTGATGACTCAGCGCTGCAAGGACAAGCTGAATGCCCTGGCGATCT
CGGTGATGAACCAGTGGCCCGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGATGGCCATCACTCCGAGGAATC
GCTGCACTACGAGGGTCGCGCCGTGGACATCACCACGTCGGATCGGGACCGCAGCAAGTACGGAATGCTGGCCCGCCTC
GCCGTCGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAGGCGCACATCCACTGCTCCGTCAAAGCAGAAAACTCAG
TGGCAGCGAAATCAGGAGGCTGCTTCCCTGGCTCAGCCACAGTGCACCTGGAGCATGGAGGCACCAAGCTGGTGAAGGA
CCTGAGCCCTGGGGACCGCGTGCTGGCTGCTGACGCGGACGGCCGGCTGCTCTACAGTGACTTCCTCACCTTCCTCGAC
CGGATGGACAGCTCCCGAAAGCTCTTCTACGTCATCGAGACGCGGCAGCCCCGGGCCCGGCTGCTACTGACGGCGGCCC
ACCTGCTCTTTGTGGCCCCCCAGCACAACCAGTCGGAGGCCACAGGGTCCACCAGTGGCCAGGCGCTCTTCGCCAGCAA
CGTGAAGCCTGGCCAACGTGTCTATGTGCTGGGCGAGGGCGGGCAGCAGCTGCTGCCGGCGTCTGTCCACAGCGTCTCA
TTGCGGGAGGAGGCGTCCGGAGCCTACGCCCCACTCACCGCCCAGGGCACCATCCTCATCAACCGGGTGTTGGCCTCCT
GCTACGCCGTCATCGAGGAGCACAGTTGGGCCCATTGGGCCTTCGCACCATTCCGCTTGGCTCAGGGGCTGCTGGCCGC
CCTCTGCCCAGATGGGGCCATCCCTACTGCCGCCACCACCACCACTGGCATCCATTGGTACTCACGGCTCCTCTACCGC
ATCGGCAGCTGGGTGCTGGATGGTGACGCGCTGCATCCGCTGGGCATGGTGGCACCGGCCAGCTGAGAGTGGCTGGAGA
GGGACAGAGACAGAGTGTGGGAGAGAGAAAAAAA
CitationSjödal M, Gunhaga L. Expression patterns of Shh, Ptc2, Raldh3, Pitx2, Isl1, Lim3 and Pax6 in the developing chick hypophyseal placode and Rathke’s pouch. Gene Expr Patterns. 2008 Sep;8(7-8):481-5. Epub 2008 Jul 4.. DOI: 10.1016/j.gep.2008.06.007.
CopyrightCopyright © 2008 Elsevier B.V.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204821).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Mesoderm
 
7-12
stage 9
stage 10
Mesoderm
 
13-18
stage 13
stage 13
stage 17
stage 17
Ectoderm
oral ectoderm and ventral neuroectoderm
19-24
stage 20
stage 20
stage 24
stage 24
Ectoderm
oral ectoderm and posterior to Rathke's pouch
oral ectoderm and ventral neuroectoderm
all
 
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.345

Mouse

EmageMGI:98297
EurexpressMGI:98297
MGI GXDMGI:98297

Frog

Xenbase488038

Fruit Fly

BDGPFBgn0004644

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-41, ZDB-GENE-980526-166
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