GEISHA - A Chicken Embryo Gene Expression Database
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SHOX2
short stature homeobox 2

Gene
Official SymbolSHOX2
Official Full Nameshort stature homeobox 2
CGNC ID56944
also known asshort stature homeobox protein 2
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_003641797
PolypeptideXP_003641845
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene777244
Ensembl Gene
KEGGgga:777244

Entry 1

GEISHA IdSHOX2.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAAGCAGCGGAGGAGCAGGAC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGACCCCACGAGCACACTTGCCcDNA Template Length307
Forward cDNA Template Probeshow
CNNCGGAAGGCATGGCANNGCTNNCACTTGNAGTANGGAGCCACCCGGCNTACTTCGAACTGAGCTGGCGGCCCCGATG
ANCACTCCTTTGTGCAGTTGGTTTTCTTGCTTCCGGCATTTGGCTCTTCTGTTTTGGAACCAAACCTGCACCCGGGCTT
CGGACAGCCCCAGCCGCTGGCTCAGCTCCTCCCGCATGAAGGCGTCCGGGTAGTGGGTCTCGTCGAAAAGCCTTTCCAG
CTCGTTCAGCTGCTCCAGGGTGAAATTCGTCCTGCTCCTCCGCTGCTTA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
Headfold
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Unlabeled
 
7-12
stage 7
stage 7
stage 10
stage 10
stage 11
Area Opaca
Blood Islands
Extraembryonic
Extraembryonic Mesoderm
Forebrain
Headfold
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Primitive Streak
Sinus Venosus
Somites
 
13-18
stage 13
stage 13
Ear/Otic Placode
Forebrain
Foregut
Heart
Hindbrain
Lateral Plate Mesoderm
Midbrain
Paraxial Mesoderm
Sinus Venosus
Somites
Spinal Cord
 
19-24
stage 19
stage 22
stage 22
stage 24
stage 24
Leg Mesenchyme
Neural Plate/Tube
Sinus Venosus
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme
 
25-26
stage 25
stage 25
stage 26
stage 26
Forebrain
Heart
Hindbrain
Leg Mesenchyme
Midbrain
Oral Pharynx
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme
 

Entry 2

GEISHA IdShox.Tiecke.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGCGTATGTCCCCGGAGCTGAAAGAGCGCAAGGAGGATGCGAAAGGCATGGAAGACGAAGGGCAGACGAAAATCAAGC
AGCGGAGGAGCAGGACGAATTTCACCCTGGAGCAGCTGAACGAGCTGGAAAGGCTTTTCGACGAGACCCACTACCCGGA
CGCCTTCATGCGGGAGGAGCTGAGCCAGCGGCTGGGGCTGTCCGAAGCCCGGGTGCAGGTTTGGTTCCAAAACAGAAAA
GCCAAATGCCGGAAGCAAGAAAACCAACTGCACAAAGGAGTGCTCATCGGGGCCGCCAGCCAGTTCGAAGCCTGCCGGG
TGGCCCCTTACGTCAACGTGGGAGCGCTGCGGATGCCCTTCCAGCAGGCAAGTGTGCTCGTGGGGTGCGGGGTTGGTTT
CACCTCTGTTAATCCGTTTCCGACGCCGCCGGTTCTGCTCAGCGCCACGTAA
CitationTiecke E, Bangs F, Blaschke R, Farrell ER, Rappold G, Tickle C. Expression of the short stature homeobox gene Shox is restricted by proximal and distal signals in chick limb buds and affects the length of skeletal elements. Dev Biol. 2006 Oct 15;298(2):585-96. Epub 2006 Jul 12.
CopyrightReprinted from Developmental Biology, 298, Eva Tiecke, Fiona Bangs, Rudiger Blaschke, Elizabeth R. Farrell, Gudrun Rappold, and Cheryll Tickie, Expression of the short stature homebox gene Shox is restricted by proximal and distal signals in chick limb buds and affects the length of skeletal elements, 585-596, 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsAuthors said: The full-length coding sequence of the chicken Shox cDNA was assembled from two overlapping PCR fragments generated. and Probes were synthesized using a standard protocol for Shox. Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #XM_001234906).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 20
stage 22
Limb Buds
Pharyngeal Arches and Clefts
head
25-30
stage 25
stage 25
stage 25
stage 25
stage 25
stage 25
stage 29
stage 29
Blood Vessels
Diencephalon
Eye
Face Mesenchyme
Leg Mesenchyme
Limb Buds
Spinal Cord
Veins
marginal vein
mesenchyme overlying the eye.
metacoele
31-36
stage 34
stage 36
stage 36
stage 36
stage 36
Feathers/Scutae
Surface Ectoderm
Wing
Wing Ectoderm
Wing Mesenchyme
Wing Muscles
dorsal
layer under the dermis

Entry 3

GEISHA IdSHOX2.Anderson.2019Data SourcePublication
Complete cDNA Template Probeshow
GCTATCAGAGCCCGGAGCTGGCGCGGAGAGCCCGGCCCCGCACGTCGGGCGGAGCGGCCCGGTTCGGAGCGGAGCGGCT
CGGAGGGCGCAGCACGGCTCGGCCCGGCCCGGCCGCACCCCGCCCCGTGGATGCCCGCCCGGGGGGGCGGCACGGCGAA
GCCGGGGCAGCGCGGCGGCCCTGAGCCGCGGCCATGGAGGAGCTGACGGCGTTCGTCTCCAAATCGTTTGATCCCAAAG
CGAAGGAGAAGAAGGAGCTCATCACCTACCGCGAGGTGCTGGAGAGCGGACCCCTGCGCGGAGCCCGGGAGCCCGGCGG
GGCCGCGGCGGAGCCGGGCCGGGACGAGACGGGCAGCCCAGCGGGGCGGGCGGGCGGCGGACGCTCCCCGCCGCGGGAA
CCCGACGCCGCCGCCGCCGACAGAGCCGCCGACGCGGCCACCCCGAAGCTGAGCGACGTGTCCCCGGAGCTGAAAGAGC
GCAAGGAGGATGCGAAAGGCATGGAAGACGAAGGGCAGACGAAAATCAAGCAGCGGAGGAGCAGGACGAATTTCACCCT
GGAGCAGCTGAACGAGCTGGAAAGGCTTTTCGACGAGACCCACTACCCGGACGCCTTCATGCGGGAGGAGCTGAGCCAG
CGGCTGGGGCTGTCCGAAGCCCGGGTGCAGGTTTGGTTCCAAAACAGAAGAGCCAAATGCCGGAAGCAAGAAAACCAAC
TGCACAAAGGAGTGCTCATCGGGGCCGCCAGCCAGTTCGAAGCCTGCCGGGTGGCCCCTTACGTCAACGTGGGAGCGCT
GCGGATGCCCTTCCAGCAGGTTCAGGCGCAGCTACAGCTGGACAGCGCCGTGGCCCACGCTCACCACCACCTCCACCCG
CACCTGGCCCACGCGCCCTACATGATGTTCCCCGCTCCGCCCTTCGGGCTCCCGCTCGCCACTTTGGCCGAATCCGCCT
CCGCCGCCTCCGTGGTGGCCGCCGCCGCCGCCGCTAAGACCACCAGCAAGAACTCGAGCATCGCCGACCTGCGGCTGAA
GGCCAAGAAGCACGCGGCCGCCCTGGGGCTGTGACCGCCGCAGCGCTGCGCGGCTCCGGGCGGAGGGACGGAGAGCCGC
GGGGGGAGAGCGGGCGCTGCCGGCGGAGACGGACTGATGTGAGAGCCGGACGGAGCAGAAGCGCAGCTGGGAAGTTCAC
AGGGTTTGAAACTGACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTGCGGAGTTCACTTTAATA
CGAGAAATTTGATAAGAGAGGCGGGCCTCCTTTCACGATGCAGCAGATCCTCGGGCTGAGCGACCACGTCGGGAACAGC
GGCAAGAAAAAAAAAAAGAAAGAATGAAGGAAAGAAAGAAGGAAAGAAAGAAGGAAGAGAGAGAATGGCGAAGAAGAAA
GAGAAAATAATAATAATAAAAATAATAAAAGAGACAGAGACAGATTTCTCTGCGAATTTCTAAAGGGAAACTGCCCGGG
ATCCGTCCTGCAGCAGCATTCCGGGTGCATGCGTTTGTATTTCATTGCTGACTCCTCGATCCACGCACCTCACCCCATC
GATAGAGCACAGCACAACCGGCGGCGCGGGGGGCACCGGCTCCGTGCCCCGGGGGCAGCGCGGGGGGCACGGGGAGCTG
CGGCTCTGCTGTCCCGGGGGTAAA
CitationAnderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
CopyrightCopyright © 2019 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_015291786).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
stage 12
Heart
presumed prospective right pacemaker
all
 
 
  

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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