GEISHA - A Chicken Embryo Gene Expression Database
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SMARCD2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2

Gene
Official SymbolSMARCD2
Official Full NameSWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
CGNC ID209
also known asSWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2, 60 kDa BRG-1/Brm-associated factor subunit B, BRG1-associated factor 60B, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_425835
PolypeptideXP_425835
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6603ENSG00000108604MIM:601736
Mouse83796ENSMUSG00000078619All phenotypic alleles (1):Targeted, knock-out(1) MGI:1933621
Xenopus734143, 447634489102
Zebrafish564317ENSDARG00000088877ZDB-GENE-080215-1ZFIN:ZDB-GENE-080215-1
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene428275
Ensembl Gene
KEGGgga:428275

Entry 1

GEISHA Idpgn1c.pk010.h16Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CAGCGTGGACCCCAATGACCAGAAGAAGACGGCCTGCTACGACATTGACGTGGAGGTGGATGACCCCCTGAAAGCTCAG
ATGAGCAACTTCCTGGCTTCCACCACCAACCAGCAGGAGATCGCCTCCCTGGATGCCAAGATCCACGAGACCATCGAAT
CCATCAACCAGCTGAAGACACAGCGCGATTTCATGCTGAGCTTCAGCAACAACCCGCAGGATTTCATCCAGGAGTGGAT
CAAATCGCAGAGGAGGGACCTCAAGATCATAACAGATGTGATCGGGAACCCTGAGGAGGAGCGGCGAGCTGAGTTCTAC
CAACAGCCCTGGGCACAGGAGGCTGTGGGCAGACACATCTTCGCCAAGGTCCAGCAGCGTCGGCAGGAACTGGAACAAG
TGCTTGGGATCCGCCTCACTTAAGAGGCCAGCAGGGCTCAGGAGCTCCTTCTCCTCCTCCTCTCCCTGCTGCCTGAGCC
TGACGGTACTTCTTACTGGAATCAAATACAGCACTTGCACAAACCCTACGTGCCTGGAGGGATTTGGAGCCGCTCGTAC
CCCTGGGCTCCCCTCAGCCAGGAAGCTCTCGCCACAGGCAGAGCAGCAGAGGGTCCCCTGATTCTCCCCGCCCCAAGTC
CTGCTGCATTAACATGTCCTTGCTTTTGCGTCGCGCCGTTCACCTCTCCCTCTAGCAATGAATGCAGCCCTCTGCGAGC
ACGCTCTCTGTCCCATCCCTCACCCTGCCTCTGGCCAAAGCCCTCCTGGCATTGCTGCCTGCCCTGCCAGCCCTCCCCA
CCACCGTGAGGGGCAGCCCCGCCTTGCCCCTCTTCAACCAAGTTTGTCATTCCAATGCCAGCCCTGCTGGTGGCCGATG
TTTTGGCCTATTTTGTGACGGGGTTTTATAAAAAAAAAAAAAAGG
Commentsno specific expression between stages 4 and 13
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 20
stage 22
Allantois
Cranial Ganglia
Ear/Otic Placcode
Limb Buds
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Surface Ectoderm
 
25
stage 25
Ear/Otic Placcode
Eye
Face Mesenchyme
Limb Buds
Pharyngeal Arches and Clefts
Somites
Tail
 

Entry 2

GEISHA IdSMARCD2.23b3Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CAGCGTGGACCCCAATGACCAGAAGAAGACGGCCTGCTACGACATTGACGTGGAGGTGGATGACCCCCTGAAAGCTCAG
ATGAGCAACTTCCTGGCTTCCACCACCAACCAGCAGGAGATCGCCTCCCTGGATGCCAAGATCCACGAGACCATCGAAT
CCATCAACCAGCTGAAGACACAGCGCGATTTCATGCTGAGCTTCAGCAACAACCCGCAGGATTTCATCCAGGAGTGGAT
CAAATCGCAGAGGAGGGACCTCAAGATCATAACAGATGTGATCGGGAACCCTGAGGAGGAGCGGCGAGCTGAGTTCTAC
CAACAGCCCTGGGCACAGGAGGCTGTGGGCAGACACATCTTCGCCAAGGTCCAGCAGCGTCGGCAGGAACTGGAACAAG
TGCTTGGGATCCGCCTCACTTAAGAGGCCAGCAGGGCTCAGGAGCTCCTTCTCCTCCTCCTCTCCCTGCTGCCTGAGCC
TGACGGTACTTCTTACTGGAATCAAATACAGCACTTGCACAAACCCTACGTGCCTGGAGGGATTTGGAGCCGCTCGTAC
CCCTGGGCTCCCCTCAGCCAGGAAGCTCTCGCCACAGGCAGAGCAGCAGAGGGTCCCCTGATTCTCCCCGCCCCAAGTC
CTGCTGCATTAACATGTCCTTGCTTTTGCGTCGCGCCGTTCACCTCTCCCTCTAGCAATGAATGCAGCCCTCTGCGAGC
ACGCTCTCTGTCCCATCCCTCACCCTGCCTCTGGCCAAGCCCTCCTGGCATTGCTGCCTGCCCTGCCAGCCCTCCCCAC
CACGTGAGGGCAGGCCCAGCCCTGCCCCCTCTTCAACAAGTTTGTCATTCAAATGCCACCCTGGCGGTGGCCGATGTTT
TTGCACTATTTTGTGAAAGGTTTTTATAAAAAAAAAAAAA
CommentsNo specific expression detected stages 5, 8, and 11.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 16
Ear/Otic Placcode
Intermediate Mesoderm
Lateral Plate Mesoderm
Limb Buds
Paraxial Mesoderm
 
19-24
stage 20
stage 21
stage 21
Lateral Plate Mesoderm
Limb Buds
Paraxial Mesoderm
Pharyngeal Arches and Clefts
 
25-28
stage 28
Face Mesenchyme
Limb Buds
Pharyngeal Arches and Clefts
Somites
 

Mouse

EmageMGI:1933621
EurexpressMGI:1933621
MGI GXDMGI:1933621

Frog

Xenbase489102

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-080215-1
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