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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SOHO-1
sensory organ homeobox protein SOHo

Gene

Official Symbol	SOHO-1
Official Full Name	sensory organ homeobox protein SOHo
CGNC ID	49762
also known as	sensory organ homeobox protein SOHo
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205386
Polypeptide	NP_990717
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.770

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish	751654	ENSDARG00000007941	ZDB-GENE-060825-142	ZFIN:ZDB-GENE-060825-142

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	396346
Ensembl Gene
KEGG	gga:396346

Entry 1

GEISHA Id	SOHO1.Bok.2011	Data Source	Publication
Complete cDNA Template Probe	show TCCGCCGCCACTCCTGCGGTTAGGCTCAGCGCGCCATGGTGCAGCTCGGGGGAGGCCGCGGAGCCCCACCGCCTCTCCT GGCCCCACCGTCGGCCTTCAGCATCGACAGCATCCTGCAGCCCGGTCCCCGCTGCCAGGCCCGGGAGCAGGGGAGGGCC CGCTGCGCGCTGCCGGAGGACGAGGAGGAGGAGGAGGAGGAAGAAGAGGGGCCTGCGGAGGAACACCCCACTAAAGGCT CCACCGACTCGGGCAGCGAGAGGCTGCTGGCGGAAGGGCCGCGCCGCGCGGATGCCGAGGCCGAAGGCGCGGTTTCACC GCTCTCCACGGAGAGGTTCCGCGGATGCCGACAGCCGTCGCTGCGGGATACCGGGGGCTGCGGTAGAGAGAGCGGCAGG TGTTCAGCGGCGGGAGGCAAGAAGAAGACGCGGACCATCTTCTCCAAGAGCCAGGTCTTCCAGCTGGAGTCCACCTTCG ACGTGAAGCGCTACCTGAGCAGCGCCGAGCGGGCCGGTCTGGCCGCCGCGCTGCACCTCACCGAGACGCAGGTGAAGAT CTGGTTCCAGAACCGCCGCAACAAGCTCAAGAGACAGCTGTCGGCTGAACCCGAGGGTCCGGGCCAAGCGGAACCCCCA GGGGAGCCTCCTCCGCCTCCCGCCGCCTCTTTCTCCTTCCCGTCCCTATACAAGGACAGCGCCCTGTTCAGCCGCTGCC TGCTGCCACTCCCCTTTCCTCTGTTCTACCCGGGCAGCGCCATCCCCTACCTCTGCCTTCCCGGTCCGGTCAAGCACTT CAGCCTGCTGGACGGGGACGTATAGCGTCTCACCTCGGCCCCCGCCCTGTCTCTTGCAGGGGGCCGATGGTCCCTGTGG CACAGCCGTACCACCATCAGCTTTCGCCCCGACACGCGGCAGCCGCTCCCAGGCCCGGGGTCCCCCACACGCTGCCGTG TGCCGTCGTGTCAGAGGAGCTTCAACGAGCGCTGCACTCTGCTCGAGACGGAGAAGAACGGAGCTGCCAAAGAAACCGG GATGCGCTGTGTCTCCTTTCCCTCCACAGCCTTTCCGTGGCCGCAGTTTAGGAAAGATGATATCTGCCTCAGTCCACGG GAATGGTGCCATCGCGGCTGCCCCCGCACCGTACCGCCACCCGAGAGCGTTGGGTACAGCCCCATCCACTCCGTACGCT CCTCTATCTCACATTCTCCGCCTTTAGTACACCTTCAATTAACGCTTCCCCATCTCTGACACTATCAAAATGCAGACAC CTCTCTAAATCTCTGTAGCTTCTCTGAATTTTGAATTTTCGAACCAAACAAGTCCTCTGTCACACTTTGTGCTAACCGG TTCCCAAATCAGGGCCCGTCTGATGTTTGGCGCACAAGTTACTCATGCTCCTTACGCTAACCCCGCCCCCGGTTGCTCA GGGGATTATTTTATCTGCTGCCCTACTGTAACGAAGTGCTTTCTTTTGTTTTTTGTTTTAATCCCCCTTAAATCTCCAA CCACATTTGTCTTCTTTTGGTTTCCGAGTTCACACGCTTTATATTACAAATTGGGAAATAAAACTTTTCTATCAGAAAC CCGAGCTGCATGCCTGTTCCGTACAGCCGCTCCAGGGCAGTGTCCAAAGAAAGACGTTTCCTAGAGTGCATCGACGGGT GTTTGTTTTAAAAATAAAGGTTGAACGTGCAATCGTGGTGTGGCGAAATTCAGAAGTGCGTGCTAAAATGGGAGACTTG TTGAGTTTTCCGGAGGGAAAAAAAAAATAATAAAATGAAAAAAAAAATAAAGAAAAGAAAAAGAGAAAAAAAAAAAAAA AAG
Citation	Bok J, Raft S, Kong KA, Koo SK, Dräger UC, Wu DK. Transient retinoic acid signaling confers anterior-posterior polarity to the inner ear. Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):161-6. Epub 2010 Dec 20.
Copyright	copyright © by the National Academy of Sciences
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205386).

Stage

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13-17

stage 17

Ear/Otic Placode

Entry 2

GEISHA Id	SOHO1.Takahashi.2003	Data Source	Publication
Complete cDNA Template Probe	show CCATGGTGCAGCTCGGGGGAGGCCGCGGAGCCCCACCGCCTCTCCTGGCCCCACCGTCGGCCTTCAGCATCGACAGCAT CCTGCAGCCCGGTCCCCGCTGCCAGGCCCGGGAGCAGGGGAGGGCCCGCTGCGCGCTGCCGGAGGACGAGGAGGAGGAG GAGGAGGAAGAAGAGGGGCCTGCGGAGGAACACCCCACTAAAGGCTCCACCGACTCGGGCAGCGAGAGGCTGCTGGCGG AAGGGCCGCGCCGCGCGGATGCCGAGGCCGAAGGCGCGGTTTCACCGCTCTCCACGGAGAGGTTCCGCGGATGCCGACA GCCGTCGCTGCGGGATACCGGGGGCTGCGGTAGAGAGAGCGGCAGGTGTTCAGCGGCGGGAGGCAAGAAGAAGACGCGG ACCATCTTCTCCAAGAGCCAGGTCTTCCAGCTGGAGTCCACCTTCGACGTGAAGCGCTACCTGAGCAGCGCCGAGCGGG CCGGTCTGGCCGCCGCGCTGCACCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAACCGCCGCAACAAGCTCAAGAG ACAGCTGTCGGCTGAACCCGAGGGTCCGGGCCAAGCGGAACCCCCAGGGGAGCCTCCTCCGCCTCCCGCCGCCTCTTTC TCCTTCCCGTCCCTATACAAGGACAGCGCCCTGTTCAGCCGCTGCCTGCTGCCACTCCCCTTTCCTCTGTTCTACCCGG GCAGCGCCATCCCCTACCTCTGCCTTCCCGGTCCGGTCAAGCACTTCAGCCTGCTGGACGGGGACGTATAG
Citation	Takahashi H, Shintani T, Sakuta H, Noda M. CBF1 controls the retinotectal topographical map along the anteroposterior axis through multiple mechanisms. Development. 2003 Nov;130(21):5203-15. Epub 2003 Sep 3.
Copyright	Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors.
Comments	The authors indicated the probe was the 782 bp fragment of chick SOHo1 (34-815; S69380),

Stage

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13-18

stage 18

Retina

Entry 3

GEISHA Id	SOHO1.Chang.2004	Data Source	Publication
Complete cDNA Template Probe	show TCCGCCGCCACTCCTGCGGTTAGGCTCAGCGCGCCATGGTGCAGCTCGGGGGAGGCCGCGGAGCCCCACCGCCTCTCCT GGCCCCACCGTCGGCCTTCAGCATCGACAGCATCCTGCAGCCCGGTCCCCGCTGCCAGGCCCGGGAGCAGGGGAGGGCC CGCTGCGCGCTGCCGGAGGACGAGGAGGAGGAGGAGGAGGAAGAAGAGGGGCCTGCGGAGGAACACCCCACTAAAGGCT CCACCGACTCGGGCAGCGAGAGGCTGCTGGCGGAAGGGCCGCGCCGCGCGGATGCCGAGGCCGAAGGCGCGGTTTCACC GCTCTCCACGGAGAGGTTCCGCGGATGCCGACAGCCGTCGCTGCGGGATACCGGGGGCTGCGGTAGAGAGAGCGGCAGG TGTTCAGCGGCGGGAGGCAAGAAGAAGACGCGGACCATCTTCTCCAAGAGCCAGGTCTTCCAGCTGGAGTCCACCTTCG ACGTGAAGCGCTACCTGAGCAGCGCCGAGCGGGCCGGTCTGGCCGCCGCGCTGCACCTCACCGAGACGCAGGTGAAGAT CTGGTTCCAGAACCGCCGCAACAAGCTCAAGAGACAGCTGTCGGCTGAACCCGAGGGTCCGGGCCAAGCGGAACCCCCA GGGGAGCCTCCTCCGCCTCCCGCCGCCTCTTTCTCCTTCCCGTCCCTATACAAGGACAGCGCCCTGTTCAGCCGCTGCC TGCTGCCACTCCCCTTTCCTCTGTTCTACCCGGGCAGCGCCATCCCCTACCTCTGCCTTCCCGGTCCGGTCAAGCACTT CAGCCTGCTGGACGGGGACGTATAGCGTCTCACCTCGGCCCCCGCCCTGTCTCTTGCAGGGGGCCGATGGTCCCTGTGG CACAGCCGTACCACCATCAGCTTTCGCCCCGACACGCGGCAGCCGCTCCCAGGCCCGGGGTCCCCCACACGCTGCCGTG TGCCGTCGTGTCAGAGGAGCTTCAACGAGCGCTGCACTCTGCTCGAGACGGAGAAGAACGGAGCTGCCAAAGAAACCGG GATGCGCTGTGTCTCCTTTCCCTCCACAGCCTTTCCGTGGCCGCAGTTTAGGAAAGATGATATCTGCCTCAGTCCACGG GAATGGTGCCATCGCGGCTGCCCCCGCACCGTACCGCCACCCGAGAGCGTTGGGTACAGCCCCATCCACTCCGTACGCT CCTCTATCTCACATTCTCCGCCTTTAGTACACCTTCAATTAACGCTTCCCCATCTCTGACACTATCAAAATGCAGACAC CTCTCTAAATCTCTGTAGCTTCTCTGAATTTTGAATTTTCGAACCAAACAAGTCCTCTGTCACACTTTGTGCTAACCGG TTCCCAAATCAGGGCCCGTCTGATGTTTGGCGCACAAGTTACTCATGCTCCTTACGCTAACCCCGCCCCCGGTTGCTCA GGGGATTATTTTATCTGCTGCCCTACTGTAACGAAGTGCTTTCTTTTGTTTTTTGTTTTAATCCCCCTTAAATCTCCAA CCACATTTGTCTTCTTTTGGTTTCCGAGTTCACACGCTTTATATTACAAATTGGGAAATAAAACTTTTCTATCAGAAAC CCGAGCTGCATGCCTGTTCCGTACAGCCGCTCCAGGGCAGTGTCCAAAGAAAGACGTTTCCTAGAGTGCATCGACGGGT GTTTGTTTTAAAAATAAAGGTTGAACGTGCAATCGTGGTGTGGCGAAATTCAGAAGTGCGTGCTAAAATGGGAGACTTG TTGAGTTTTCCGGAGGGAAAAAAAAAATAATAAAATGAAAAAAAAAATAAAGAAAAGAAAAAGAGAAAAAAAAAAAAAA AAG
Citation	Chang W, Brigande JV, Fekete DM, Wu DK. The development of semicircular canals in the inner ear: role of FGFs in sensory cristae. Development. 2004 Sep;131(18):4425-34. Epub 2004 Aug 11.
Copyright	Copyright is held by the authors. Published by the Company of Biologists Ltd.

Stage

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19-23

stage 23

Ear/Otic Placode

Entry 4

GEISHA Id	SOHO1.Apostolova.2007	Data Source	Publication
Complete cDNA Template Probe	show TCCGCCGCCACTCCTGCGGTTAGGCTCAGCGCGCCATGGTGCAGCTCGGGGGAGGCCGCGGAGCCCCACCGCCTCTCCT GGCCCCACCGTCGGCCTTCAGCATCGACAGCATCCTGCAGCCCGGTCCCCGCTGCCAGGCCCGGGAGCAGGGGAGGGCC CGCTGCGCGCTGCCGGAGGACGAGGAGGAGGAGGAGGAGGAAGAAGAGGGGCCTGCGGAGGAACACCCCACTAAAGGCT CCACCGACTCGGGCAGCGAGAGGCTGCTGGCGGAAGGGCCGCGCCGCGCGGATGCCGAGGCCGAAGGCGCGGTTTCACC GCTCTCCACGGAGAGGTTCCGCGGATGCCGACAGCCGTCGCTGCGGGATACCGGGGGCTGCGGTAGAGAGAGCGGCAGG TGTTCAGCGGCGGGAGGCAAGAAGAAGACGCGGACCATCTTCTCCAAGAGCCAGGTCTTCCAGCTGGAGTCCACCTTCG ACGTGAAGCGCTACCTGAGCAGCGCCGAGCGGGCCGGTCTGGCCGCCGCGCTGCACCTCACCGAGACGCAGGTGAAGAT CTGGTTCCAGAACCGCCGCAACAAGCTCAAGAGACAGCTGTCGGCTGAACCCGAGGGTCCGGGCCAAGCGGAACCCCCA GGGGAGCCTCCTCCGCCTCCCGCCGCCTCTTTCTCCTTCCCGTCCCTATACAAGGACAGCGCCCTGTTCAGCCGCTGCC TGCTGCCACTCCCCTTTCCTCTGTTCTACCCGGGCAGCGCCATCCCCTACCTCTGCCTTCCCGGTCCGGTCAAGCACTT CAGCCTGCTGGACGGGGACGTATAGCGTCTCACCTCGGCCCCCGCCCTGTCTCTTGCAGGGGGCCGATGGTCCCTGTGG CACAGCCGTACCACCATCAGCTTTCGCCCCGACACGCGGCAGCCGCTCCCAGGCCCGGGGTCCCCCACACGCTGCCGTG TGCCGTCGTGTCAGAGGAGCTTCAACGAGCGCTGCACTCTGCTCGAGACGGAGAAGAACGGAGCTGCCAAAGAAACCGG GATGCGCTGTGTCTCCTTTCCCTCCACAGCCTTTCCGTGGCCGCAGTTTAGGAAAGATGATATCTGCCTCAGTCCACGG GAATGGTGCCATCGCGGCTGCCCCCGCACCGTACCGCCACCCGAGAGCGTTGGGTACAGCCCCATCCACTCCGTACGCT CCTCTATCTCACATTCTCCGCCTTTAGTACACCTTCAATTAACGCTTCCCCATCTCTGACACTATCAAAATGCAGACAC CTCTCTAAATCTCTGTAGCTTCTCTGAATTTTGAATTTTCGAACCAAACAAGTCCTCTGTCACACTTTGTGCTAACCGG TTCCCAAATCAGGGCCCGTCTGATGTTTGGCGCACAAGTTACTCATGCTCCTTACGCTAACCCCGCCCCCGGTTGCTCA GGGGATTATTTTATCTGCTGCCCTACTGTAACGAAGTGCTTTCTTTTGTTTTTTGTTTTAATCCCCCTTAAATCTCCAA CCACATTTGTCTTCTTTTGGTTTCCGAGTTCACACGCTTTATATTACAAATTGGGAAATAAAACTTTTCTATCAGAAAC CCGAGCTGCATGCCTGTTCCGTACAGCCGCTCCAGGGCAGTGTCCAAAGAAAGACGTTTCCTAGAGTGCATCGACGGGT GTTTGTTTTAAAAATAAAGGTTGAACGTGCAATCGTGGTGTGGCGAAATTCAGAAGTGCGTGCTAAAATGGGAGACTTG TTGAGTTTTCCGGAGGGAAAAAAAAAATAATAAAATGAAAAAAAAAATAAAGAAAAGAAAAAGAGAAAAAAAAAAAAAA AAG
Citation	Apostolova G, Dorn R, Ka S, Hallböök F, Lundeberg J, Liser K, Hakim V, Brodski C, Michaelidis TM, Dechant G. Neurotransmitter phenotype-specific expression changes in developing sympathetic neurons. Mol Cell Neurosci. 2007 Jul;35(3):397-408. Epub 2007 Apr 1.
Copyright	Copyright © 2007 Elsevier Inc. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205386.1

Stage

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Location (click to highlight)

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31-44

stage 44

Spinal Ganglia and Nerves

Entry 5

GEISHA Id	SOHO1.Adamska.2001	Data Source	Publication
Complete cDNA Template Probe	show TCCGCCGCCACTCCTGCGGTTAGGCTCAGCGCGCCATGGTGCAGCTCGGGGGAGGCCGCGGAGCCCCACCGCCTCTCCT GGCCCCACCGTCGGCCTTCAGCATCGACAGCATCCTGCAGCCCGGTCCCCGCTGCCAGGCCCGGGAGCAGGGGAGGGCC CGCTGCGCGCTGCCGGAGGACGAGGAGGAGGAGGAGGAGGAAGAAGAGGGGCCTGCGGAGGAACACCCCACTAAAGGCT CCACCGACTCGGGCAGCGAGAGGCTGCTGGCGGAAGGGCCGCGCCGCGCGGATGCCGAGGCCGAAGGCGCGGTTTCACC GCTCTCCACGGAGAGGTTCCGCGGATGCCGACAGCCGTCGCTGCGGGATACCGGGGGCTGCGGTAGAGAGAGCGGCAGG TGTTCAGCGGCGGGAGGCAAGAAGAAGACGCGGACCATCTTCTCCAAGAGCCAGGTCTTCCAGCTGGAGTCCACCTTCG ACGTGAAGCGCTACCTGAGCAGCGCCGAGCGGGCCGGTCTGGCCGCCGCGCTGCACCTCACCGAGACGCAGGTGAAGAT CTGGTTCCAGAACCGCCGCAACAAGCTCAAGAGACAGCTGTCGGCTGAACCCGAGGGTCCGGGCCAAGCGGAACCCCCA GGGGAGCCTCCTCCGCCTCCCGCCGCCTCTTTCTCCTTCCCGTCCCTATACAAGGACAGCGCCCTGTTCAGCCGCTGCC TGCTGCCACTCCCCTTTCCTCTGTTCTACCCGGGCAGCGCCATCCCCTACCTCTGCCTTCCCGGTCCGGTCAAGCACTT CAGCCTGCTGGACGGGGACGTATAGCGTCTCACCTCGGCCCCCGCCCTGTCTCTTGCAGGGGGCCGATGGTCCCTGTGG CACAGCCGTACCACCATCAGCTTTCGCCCCGACACGCGGCAGCCGCTCCCAGGCCCGGGGTCCCCCACACGCTGCCGTG TGCCGTCGTGTCAGAGGAGCTTCAACGAGCGCTGCACTCTGCTCGAGACGGAGAAGAACGGAGCTGCCAAAGAAACCGG GATGCGCTGTGTCTCCTTTCCCTCCACAGCCTTTCCGTGGCCGCAGTTTAGGAAAGATGATATCTGCCTCAGTCCACGG GAATGGTGCCATCGCGGCTGCCCCCGCACCGTACCGCCACCCGAGAGCGTTGGGTACAGCCCCATCCACTCCGTACGCT CCTCTATCTCACATTCTCCGCCTTTAGTACACCTTCAATTAACGCTTCCCCATCTCTGACACTATCAAAATGCAGACAC CTCTCTAAATCTCTGTAGCTTCTCTGAATTTTGAATTTTCGAACCAAACAAGTCCTCTGTCACACTTTGTGCTAACCGG TTCCCAAATCAGGGCCCGTCTGATGTTTGGCGCACAAGTTACTCATGCTCCTTACGCTAACCCCGCCCCCGGTTGCTCA GGGGATTATTTTATCTGCTGCCCTACTGTAACGAAGTGCTTTCTTTTGTTTTTTGTTTTAATCCCCCTTAAATCTCCAA CCACATTTGTCTTCTTTTGGTTTCCGAGTTCACACGCTTTATATTACAAATTGGGAAATAAAACTTTTCTATCAGAAAC CCGAGCTGCATGCCTGTTCCGTACAGCCGCTCCAGGGCAGTGTCCAAAGAAAGACGTTTCCTAGAGTGCATCGACGGGT GTTTGTTTTAAAAATAAAGGTTGAACGTGCAATCGTGGTGTGGCGAAATTCAGAAGTGCGTGCTAAAATGGGAGACTTG TTGAGTTTTCCGGAGGGAAAAAAAAAATAATAAAATGAAAAAAAAAATAAAGAAAAGAAAAAGAGAAAAAAAAAAAAAA AAG
Citation	Adamska M, Herbrand H, Adamski M, Krüger M, Braun T, Bober E. FGFs control the patterning of the inner ear but are not able to induce the full ear program. Mech Dev. 2001 Dec;109(2):303-13.
Copyright	Copyright © 2001 Elsevier Science Ireland Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205386).

Stage

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Location (click to highlight)

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7-12

stage 10

Ear/Otic Placode
Eye

31-44

stage 44

Entry 6

GEISHA Id	SOHo-1.Kiernan.1997	Data Source	Publication
Complete cDNA Template Probe	show TCCGCCGCCACTCCTGCGGTTAGGCTCAGCGCGCCATGGTGCAGCTCGGGGGAGGCCGCGGAGCCCCACCGCCTCTCCT GGCCCCACCGTCGGCCTTCAGCATCGACAGCATCCTGCAGCCCGGTCCCCGCTGCCAGGCCCGGGAGCAGGGGAGGGCC CGCTGCGCGCTGCCGGAGGACGAGGAGGAGGAGGAGGAGGAAGAAGAGGGGCCTGCGGAGGAACACCCCACTAAAGGCT CCACCGACTCGGGCAGCGAGAGGCTGCTGGCGGAAGGGCCGCGCCGCGCGGATGCCGAGGCCGAAGGCGCGGTTTCACC GCTCTCCACGGAGAGGTTCCGCGGATGCCGACAGCCGTCGCTGCGGGATACCGGGGGCTGCGGTAGAGAGAGCGGCAGG TGTTCAGCGGCGGGAGGCAAGAAGAAGACGCGGACCATCTTCTCCAAGAGCCAGGTCTTCCAGCTGGAGTCCACCTTCG ACGTGAAGCGCTACCTGAGCAGCGCCGAGCGGGCCGGTCTGGCCGCCGCGCTGCACCTCACCGAGACGCAGGTGAAGAT CTGGTTCCAGAACCGCCGCAACAAGCTCAAGAGACAGCTGTCGGCTGAACCCGAGGGTCCGGGCCAAGCGGAACCCCCA GGGGAGCCTCCTCCGCCTCCCGCCGCCTCTTTCTCCTTCCCGTCCCTATACAAGGACAGCGCCCTGTTCAGCCGCTGCC TGCTGCCACTCCCCTTTCCTCTGTTCTACCCGGGCAGCGCCATCCCCTACCTCTGCCTTCCCGGTCCGGTCAAGCACTT CAGCCTGCTGGACGGGGACGTATAGCGTCTCACCTCGGCCCCCGCCCTGTCTCTTGCAGGGGGCCGATGGTCCCTGTGG CACAGCCGTACCACCATCAGCTTTCGCCCCGACACGCGGCAGCCGCTCCCAGGCCCGGGGTCCCCCACACGCTGCCGTG TGCCGTCGTGTCAGAGGAGCTTCAACGAGCGCTGCACTCTGCTCGAGACGGAGAAGAACGGAGCTGCCAAAGAAACCGG GATGCGCTGTGTCTCCTTTCCCTCCACAGCCTTTCCGTGGCCGCAGTTTAGGAAAGATGATATCTGCCTCAGTCCACGG GAATGGTGCCATCGCGGCTGCCCCCGCACCGTACCGCCACCCGAGAGCGTTGGGTACAGCCCCATCCACTCCGTACGCT CCTCTATCTCACATTCTCCGCCTTTAGTACACCTTCAATTAACGCTTCCCCATCTCTGACACTATCAAAATGCAGACAC CTCTCTAAATCTCTGTAGCTTCTCTGAATTTTGAATTTTCGAACCAAACAAGTCCTCTGTCACACTTTGTGCTAACCGG TTCCCAAATCAGGGCCCGTCTGATGTTTGGCGCACAAGTTACTCATGCTCCTTACGCTAACCCCGCCCCCGGTTGCTCA GGGGATTATTTTATCTGCTGCCCTACTGTAACGAAGTGCTTTCTTTTGTTTTTTGTTTTAATCCCCCTTAAATCTCCAA CCACATTTGTCTTCTTTTGGTTTCCGAGTTCACACGCTTTATATTACAAATTGGGAAATAAAACTTTTCTATCAGAAAC CCGAGCTGCATGCCTGTTCCGTACAGCCGCTCCAGGGCAGTGTCCAAAGAAAGACGTTTCCTAGAGTGCATCGACGGGT GTTTGTTTTAAAAATAAAGGTTGAACGTGCAATCGTGGTGTGGCGAAATTCAGAAGTGCGTGCTAAAATGGGAGACTTG TTGAGTTTTCCGGAGGGAAAAAAAAAATAATAAAATGAAAAAAAAAATAAAGAAAAGAAAAAGAGAAAAAAAAAAAAAA AAG
Citation	Kiernan AE, Nunes F, Wu DK, Fekete DM. The expression domain of two related homeobox genes defines a compartment in the chicken inner ear that may be involved in semicircular canal formation. Dev Biol. 1997 Nov 15;191(2):215-29.
Copyright	Copyright q 1997 by Academic Press.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205386.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 14

stage 15

stage 16

stage 17

Ear/Otic Placode

19-24

stage 19

stage 22

stage 23

stage 24

Ear/Otic Placode

pseudocolored In situ: SOHo-1 is yellow

25-30

stage 28

stage 29

stage 30

Ear/Otic Placode

31-44

stage 44

Entry 7

GEISHA Id	SOHO1.Freter.2012	Data Source	Publication
Complete cDNA Template Probe	show TCCGCCGCCACTCCTGCGGTTAGGCTCAGCGCGCCATGGTGCAGCTCGGGGGAGGCCGCGGAGCCCCACCGCCTCTCCT GGCCCCACCGTCGGCCTTCAGCATCGACAGCATCCTGCAGCCCGGTCCCCGCTGCCAGGCCCGGGAGCAGGGGAGGGCC CGCTGCGCGCTGCCGGAGGACGAGGAGGAGGAGGAGGAGGAAGAAGAGGGGCCTGCGGAGGAACACCCCACTAAAGGCT CCACCGACTCGGGCAGCGAGAGGCTGCTGGCGGAAGGGCCGCGCCGCGCGGATGCCGAGGCCGAAGGCGCGGTTTCACC GCTCTCCACGGAGAGGTTCCGCGGATGCCGACAGCCGTCGCTGCGGGATACCGGGGGCTGCGGTAGAGAGAGCGGCAGG TGTTCAGCGGCGGGAGGCAAGAAGAAGACGCGGACCATCTTCTCCAAGAGCCAGGTCTTCCAGCTGGAGTCCACCTTCG ACGTGAAGCGCTACCTGAGCAGCGCCGAGCGGGCCGGTCTGGCCGCCGCGCTGCACCTCACCGAGACGCAGGTGAAGAT CTGGTTCCAGAACCGCCGCAACAAGCTCAAGAGACAGCTGTCGGCTGAACCCGAGGGTCCGGGCCAAGCGGAACCCCCA GGGGAGCCTCCTCCGCCTCCCGCCGCCTCTTTCTCCTTCCCGTCCCTATACAAGGACAGCGCCCTGTTCAGCCGCTGCC TGCTGCCACTCCCCTTTCCTCTGTTCTACCCGGGCAGCGCCATCCCCTACCTCTGCCTTCCCGGTCCGGTCAAGCACTT CAGCCTGCTGGACGGGGACGTATAGCGTCTCACCTCGGCCCCCGCCCTGTCTCTTGCAGGGGGCCGATGGTCCCTGTGG CACAGCCGTACCACCATCAGCTTTCGCCCCGACACGCGGCAGCCGCTCCCAGGCCCGGGGTCCCCCACACGCTGCCGTG TGCCGTCGTGTCAGAGGAGCTTCAACGAGCGCTGCACTCTGCTCGAGACGGAGAAGAACGGAGCTGCCAAAGAAACCGG GATGCGCTGTGTCTCCTTTCCCTCCACAGCCTTTCCGTGGCCGCAGTTTAGGAAAGATGATATCTGCCTCAGTCCACGG GAATGGTGCCATCGCGGCTGCCCCCGCACCGTACCGCCACCCGAGAGCGTTGGGTACAGCCCCATCCACTCCGTACGCT CCTCTATCTCACATTCTCCGCCTTTAGTACACCTTCAATTAACGCTTCCCCATCTCTGACACTATCAAAATGCAGACAC CTCTCTAAATCTCTGTAGCTTCTCTGAATTTTGAATTTTCGAACCAAACAAGTCCTCTGTCACACTTTGTGCTAACCGG TTCCCAAATCAGGGCCCGTCTGATGTTTGGCGCACAAGTTACTCATGCTCCTTACGCTAACCCCGCCCCCGGTTGCTCA GGGGATTATTTTATCTGCTGCCCTACTGTAACGAAGTGCTTTCTTTTGTTTTTTGTTTTAATCCCCCTTAAATCTCCAA CCACATTTGTCTTCTTTTGGTTTCCGAGTTCACACGCTTTATATTACAAATTGGGAAATAAAACTTTTCTATCAGAAAC CCGAGCTGCATGCCTGTTCCGTACAGCCGCTCCAGGGCAGTGTCCAAAGAAAGACGTTTCCTAGAGTGCATCGACGGGT GTTTGTTTTAAAAATAAAGGTTGAACGTGCAATCGTGGTGTGGCGAAATTCAGAAGTGCGTGCTAAAATGGGAGACTTG TTGAGTTTTCCGGAGGGAAAAAAAAAATAATAAAATGAAAAAAAAAATAAAGAAAAGAAAAAGAGAAAAAAAAAAAAAA AAG
Citation	Freter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Dev Dyn. 2012 Nov;241(11):1716-28
Copyright	Copyright © 2012 Wiley Periodicals, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205386.1).