GEISHA - A Chicken Embryo Gene Expression Database
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SOX1
SRY-box 1

Gene
Official SymbolSOX1
Official Full NameSRY-box 1
CGNC ID20064
also known astranscription factor SOX-1|SRY (sex determining region Y)-box 1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204333
PolypeptideNP_989664
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.165
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly44275FBgn0029123
Human6656MIM:602148
Mouse20664ENSMUSG00000096014All phenotypic alleles (4):Targeted, other(4) MGI:98357
Xenopus779569, 7341741018268
Zebrafish436756, 562710ENSDARG00000069866, ENSDARG00000008131ZDB-GENE-040718-186, ZDB-GENE-060322-5ZFIN:ZDB-GENE-040718-186, ZFIN:ZDB-GENE-060322-5
Gene Ontology
Molecular FunctionDNA binding
Biological Processregulation of transcription, DNA-templated, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene374240
Ensembl Gene
KEGGgga:374240
GEISHA IdSOX1.Uchikawa.2011Data SourcePublication
Complete cDNA Template Probeshow
CCGCAGAGCGCGGCAGGACGGGCACACGCCGGGCGCAGCACCGCGAAGCACCGCGCAGCCCCGCGCAGCCCCGCACCTG
TTTGCGCGCCCCGCGCCCGGAGCGGCCCCCGGCAGCGGGAGGACGCCGGCAGCGCCGCCGCCGCCGCTCCTCGCATGTG
CGGTGCCTCCCCGCCGCCCGGCGCCGGAGGGAAGTGAGGAAGCCCCGTGAATGTACAGCATGATGATGGAGACGGACTT
GCACTCGCCCGGCGGAGCCCCGGCGCCCGGCGGCGGCCTCTCGGGGCAGAGCGGCGCGGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGGGGCAAAGCGGGGCAGGACCGCGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCGCGGGGGCAGC
GGCGGAAGATGGCCCAGGAGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGGCTGGGCGCCGAGTGGAAGGTGAT
GTCGGAGGCCGAGAAGCGGCCTTTCATCGACGAGGCGAAGCGGCTGCGGGCGCTGCACATGAAGGAGCACCCGGATTAT
AAATACCGGCCCCGGCGGAAGACCAAGACGCTGCTCAAGAAGGACAAGTACTCGCTGGCCGGAGGGCTGCTGGGCGCCG
GCCCGGCCGCGGGCGGCCCTCCCGCCGTCGGCGTGGGCATGGGCGTCGGCGTGATCCCCGGCGGAGTCGGGCAGCGGCT
GGAGAGCCCCGGCGGGGCGGCGGGCGGCGGCTACGCGCACATGAACGGGTGGGCCAACGGCGCCTACCCGGGCTCGGTG
GCGGCGGCGGCGGCGGCGGCGGCGATGATGCAGGAGGCGCAGCTCGCCTACGGGCAGCACCCGGGCGGCGGGGGGCACC
CGCACCACCCGCACCCGCACCACCCGCACCACCCGCACAACCCGCAGCCCATGCACCGCTACGACATGGGCGCGCTGCA
GTACAGCCCCATCTCCAACTCGCAGGGCTACGTGAGCGCCTCGCCCTCGGGCTACGGCGCGCTGCCCTACGGCTCGCAG
CCCCACCAGAACTCGGCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCGCCTCGTCGGGCGCGCTGGGCGCGCTGG
GCTCGCTCGTCAAGTCGGAGCCCAGCGTGAGCCCGCCCGTCACCTCGCACTCGCGGGCCCCGTGCCCCGGGGACCTGCG
GGAGATGATCAGTATGTACTTACCGGGCGGCGAGGGAGGCGACCCGGCGGCCGCCGCCGCCCAGAGCCGCCTGCACTCC
CTGCCCCAGCACTACCAGAGCGCCAGCACGGGGGTCAACGGCACCGTCCCCTTGACGCACATCTGAGCGGCCCCGGAGC
GGCCCCGGAGCGGCGCGGAGGGCCCCGGCCCGGGCCCCGCAGGACTGCGGCCCCGCCGCCGCCCCGCGCCCGCCGCCCC
CCTTCGTTTTTGCCTTTCATTCGGCTCCTTCCCGCCCTCCCCCTCCCTCCTTCCTTTTTTTGTTTTGTTTTGTTTTGTT
TTTCTTTTCTTCCTTTTTGTACAGAAATGTTTTGATGTTCTTGTAATAATAATAAATAATAATAATAATAATAACGAGA
GAGAGAGAAAAAGAAGGTAACGGTGGCTTTACTGACCTTTTTGTTTTTAGGAGGACCAGATCCCGGGACTAGTTTTAGA
CTGAACTTCTGTGTTTTATCGAGACTTTTTGTACAGTATTTATCATTCACCCCAGAGACACAGAGCGTTTATTTGCAAA
AGAGGAGAGAGAGAGGATTAAAAAACAAAAACAAACAAACAAACAAACAAAAAAAGACGGCGACGAAAAGACAAAACCA
TCGCCGCTGACACCCAAAGTTCGGGCGGGGCCAACTTTCGGGCTGCGCTTCGCCCCGCACCGCCTCACTGCAAACGGAG
CCGACGGGGAGCGGTGCTCGTTCCTTCCTCGCACACCCCAAAACAGCACCACGAGTTTCCGTAGATGTTCTCGCGCTTT
TCCTTTTTGGTTGGGTTATTTCGGCTGCTTTATTTATACAACTTTTTCTTCTTCTTCCTTTCTTCCCGAGGTTGCAACG
TTTGCTTGATTTTTATTTTATTTTATTTTTTTTTCTGGGTTATGTGAAACTTTACTGTATCTGCATCATTTCGGTTTGT
TTTCCTCCCCCCCCCCCCCTTTTTTTTTTTTTTTACATTTTTTTGTATCATCTCGTGTAAATGCATTGTGAAATAATTT
TTATCTAGGCGTGGCGAGGGAACCCAGACTGTACATAGTTTACTAAAAAGCCTTTCTGCTAAACAGAAACCCGAAGGAT
GCGTTCCATTTTGAGTTAAAT
CitationUchikawa M,Yoshida M, Iwafuchi-Doi M, Matsuda K, Ishida Y, Takemoto T, Kondoh H. B1 and B2 Sox gene expression during neural plate development in chicken and mouse embryos: universal versus species-dependent features. Cell Growth Differ 2011 Aug;53(6):761-71.. null.
Copyright© 2011 Japanese Society of Developmental Biologists.
CommentsInsufficient information is provided in publication to verify exact sequence used to synthesize probe; the full length RNA sequence was obtained from NCBI (acc NM_204333.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
Neural Plate/Tube
 
7-12
stage 7
stage 8
stage 9
stage 9
stage 10
stage 11
stage 11
stage 12
Neural Plate/Tube
Notochord
Rhombomeres
 
13-18
stage 13
Neural Plate/Tube
 
19
stage 19
stage 19
stage 19
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.165

Mouse

EmageMGI:98357
EurexpressMGI:98357
MGI GXDMGI:98357

Frog

Xenbase1018268

Fruit Fly

BDGPFBgn0029123

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040718-186, ZDB-GENE-060322-5
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