GEISHA - A Chicken Embryo Gene Expression Database
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SOX17
SRY-box 17

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolSOX17
Official Full NameSRY-box 17
CGNC ID53393
also known astranscription factor SOX-17|HMG transcription factor SOX17|SRY (sex determining region Y)-box 17
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001039326
PolypeptideNP_001034415
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.7231
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human64321ENSG00000164736MIM:613674MIM:610928
Mouse20671ENSMUSG00000025902All phenotypic alleles (9):Targeted, knock-out(2) Targeted, other(7) MGI:107543
Xenopus395066, 397966, 398765484294
Zebrafish30544ENSDARG00000041345ZDB-GENE-991213-1ZFIN:ZDB-GENE-991213-1
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene428534
Ensembl Gene
KEGGgga:428534

Entry 1

GEISHA Idpgr1n.pk001.g24Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GTCCGTCCGTGGCCGTATGGGCCCGGGCGCCCCGCGATGAGCATCCCCGATGCGTGCTACACCAGCAACGAGGAGCATG
CGCATGGCCGGGGCGCGCTGCCCTCTATGATGCCTGCCCTGGGCCCGTGCCCCTGGGCGGAGGCGCTGATCCCGCCGGG
CGATGCCTAGGCGAATGGCTAGGCGGGCGCGACCGGCGGGCTCGGCAAGGGCGATGCGCGGATCCGGCTGCCCATGAAC
TCCTTCATGGTGTGGGCGAAGGACTAGTGCAATCTGCTGGCGCAGCAGAATCCTGACCTGCACATACTTGATCTCATCA
AGATTCTGGGTATATCGTGGAAGGCGC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Endoderm, early
 
7-12
stage 10
stage 10
stage 11
Endoderm
Extraembryonic
 
13
stage 13
stage 13
Anterior Intestinal Portal
Blood Vessels
Endoderm
Extraembryonic
 

Entry 2

GEISHA IdSOX17.Chapman.2007Data SourcePublication
Complete cDNA Template Probeshow
GGGGCCCGGGCGCCCCGCGATGAGCAGCCCCGATGCGGGCTACGCCAGCAGCGAGGAGCAGGCGCAGGGCCGGGGCGCG
CTGCCCGCTATGATGCCGGCCCTGGGCCCGTGCCCCTGGGCGGAGGCGCTGAGCCCGCCGGGCGAGGCCAAGGCGAAGG
GCGAGGCGGGGGCGACGGGCGGGCGCGGCAAGGGCGAGGCGCGGATCCGGCGGCCCATGAACGCCTTCATGGTGTGGGC
GAAGGACGAGCGCAAGCGGCTGGCGCAGCAGAACCCGGACCTGCACAACGCGGAGCTCAGCAAGATGCTGGGTAAATCG
TGGAAGGCGCTGTCGCTGGCGGAGAAGCGGCCGTTCGTGGAGGAGGCGGAGCGGCTGCGGGTGCAGCACATGCAGGACC
ACCCGAACTACAAGTACCGGCCGCGGCGGCGGAAGCAGGTGAAGCGCCTGAAGCGGGCGGAGGGCGGCTTCGCGCAGCA
CGGCCCGGCCGAGGCGGCGCCGCCCGCGCTGGGCCCCGACGGAGGCGGCGTCGGGACGTGCGGCGAGAGCCTGGCGCTG
CCGTACGCGGAGCGCGGCTACGCGGCGGGGCCGGGGCGCTACCGGGACTGCCCGCCGCTGGGCGCCGCCTTCGACGGCT
TCGGGCTGCCCACGCCGGACCCGTCCCCGCTGGACGCGGCGCACGGCGAGGCGCCCTTCTTCGCGCCGGGGCCGCCCGA
CGAGTGCGCGCCGGGGCCCTACGGCGGCTACGGCCCCGCGGCGGCGGGAGACTTCGCGGCGGCGGGAGCGGGCGAGAGC
CCCGCGGGGGCGGCGCTGCGGCGGCACCAGCACCAGCACCACCAGCCGCACCAGCACTCGCACCCCGCTGCCGGCGAGC
TGGGGCCGGGCGGCGCCCTGCCGGGGCTGCTGGGCTGCCCGGCGCCGCCGCACTACTACGGGCAGCTGTGCCCGGGCCG
CGGCCCGCCCGCTCCCGTGCCCGTGCCGGTGGCTGTGGCGCTGGGCGCGCAGCCGTCCCCGCCGCCCGAGGCCGCGGCG
TGCCGGGAGCCGCTGGAGCACTTGCCGCAGGAGGAGCTGCTGGGCGAGGTGGACCGCAGCGAGTTCGAGCAGTACCTGC
GCTTCGCCTGCAAGGCCGAGCTGGGGCCGCCCTTCGCGGGCCACGACGTGGCCGGGCTGGCGTCGCCCGAGGCTGCGGG
GCCGCTCTCCGCCGTGGTGTCGGACGCCAGCAGCGCCGTCTACTACTGCGGCTACGCCGACGGCTGAGGGCTGCGGCGG
CACCGGGACGCCTCGCTCCTATTTATGTAATTTATTCGGATGCTGAGGACTGCCGAGGACCGGGACTCGCTCGGGGTTC
AGAGGGTGCCGCGGCCGCGCCGCGCTCCGAGTGATGCCGGGATCGCCGTCCCCGTCTCACCGCGGGGTGCCGCGTTCGT
TCCGCGGAACCCCGACGTGACACACAGCGGGGATGTCATTCATGGTCGAGATCCTTGCGGAGATAGCGATGGTTTTGTA
ACGTTGTACAGACTTCGGGTTTTTATATGTTGGTCGTGTACAGAGTAATTTTGCACTTTTTCCATGGTACCCGGATCCT
C
CitationChapman SC, Matsumoto K, Cai Q, Schoenwolf GC. Specification of germ layer identity in the chick gastrula. BMC Dev Biol. 2007 Jul 30;7:91.
Copyright© 2007 Chapman et al; licensee BioMed Central Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001039326.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
stage 1
stage 1
stage 3
stage 3
stage 3
stage 3
Early Endoderm
Kohler's Sickle
Primitive Streak
Stage 3b chicken embryo
CGW, caudal germ wall
PMZ, posterior marginal zone
Stage 3c chicken embryo
sagittal section of Fig. 1 (A)
sagittal section of Fig. 1 (E)
4
stage 4
stage 4
Early Endoderm
sagittal section of Fig. 1 (G)

Entry 3

GEISHA IdSOX17.Acloque.2011Data SourcePublication
Complete cDNA Template Probeshow
GGGGCCCGGGCGCCCCGCGATGAGCAGCCCCGATGCGGGCTACGCCAGCAGCGAGGAGCAGGCGCAGGGCCGGGGCGCG
CTGCCCGCTATGATGCCGGCCCTGGGCCCGTGCCCCTGGGCGGAGGCGCTGAGCCCGCCGGGCGAGGCCAAGGCGAAGG
GCGAGGCGGGGGCGACGGGCGGGCGCGGCAAGGGCGAGGCGCGGATCCGGCGGCCCATGAACGCCTTCATGGTGTGGGC
GAAGGACGAGCGCAAGCGGCTGGCGCAGCAGAACCCGGACCTGCACAACGCGGAGCTCAGCAAGATGCTGGGTAAATCG
TGGAAGGCGCTGTCGCTGGCGGAGAAGCGGCCGTTCGTGGAGGAGGCGGAGCGGCTGCGGGTGCAGCACATGCAGGACC
ACCCGAACTACAAGTACCGGCCGCGGCGGCGGAAGCAGGTGAAGCGCCTGAAGCGGGCGGAGGGCGGCTTCGCGCAGCA
CGGCCCGGCCGAGGCGGCGCCGCCCGCGCTGGGCCCCGACGGAGGCGGCGTCGGGACGTGCGGCGAGAGCCTGGCGCTG
CCGTACGCGGAGCGCGGCTACGCGGCGGGGCCGGGGCGCTACCGGGACTGCCCGCCGCTGGGCGCCGCCTTCGACGGCT
TCGGGCTGCCCACGCCGGACCCGTCCCCGCTGGACGCGGCGCACGGCGAGGCGCCCTTCTTCGCGCCGGGGCCGCCCGA
CGAGTGCGCGCCGGGGCCCTACGGCGGCTACGGCCCCGCGGCGGCGGGAGACTTCGCGGCGGCGGGAGCGGGCGAGAGC
CCCGCGGGGGCGGCGCTGCGGCGGCACCAGCACCAGCACCACCAGCCGCACCAGCACTCGCACCCCGCTGCCGGCGAGC
TGGGGCCGGGCGGCGCCCTGCCGGGGCTGCTGGGCTGCCCGGCGCCGCCGCACTACTACGGGCAGCTGTGCCCGGGCCG
CGGCCCGCCCGCTCCCGTGCCCGTGCCGGTGGCTGTGGCGCTGGGCGCGCAGCCGTCCCCGCCGCCCGAGGCCGCGGCG
TGCCGGGAGCCGCTGGAGCACTTGCCGCAGGAGGAGCTGCTGGGCGAGGTGGACCGCAGCGAGTTCGAGCAGTACCTGC
GCTTCGCCTGCAAGGCCGAGCTGGGGCCGCCCTTCGCGGGCCACGACGTGGCCGGGCTGGCGTCGCCCGAGGCTGCGGG
GCCGCTCTCCGCCGTGGTGTCGGACGCCAGCAGCGCCGTCTACTACTGCGGCTACGCCGACGGCTGAGGGCTGCGGCGG
CACCGGGACGCCTCGCTCCTATTTATGTAATTTATTCGGATGCTGAGGACTGCCGAGGACCGGGACTCGCTCGGGGTTC
AGAGGGTGCCGCGGCCGCGCCGCGCTCCGAGTGATGCCGGGATCGCCGTCCCCGTCTCACCGCGGGGTGCCGCGTTCGT
TCCGCGGAACCCCGACGTGACACACAGCGGGGATGTCATTCATGGTCGAGATCCTTGCGGAGATAGCGATGGTTTTGTA
ACGTTGTACAGACTTCGGGTTTTTATATGTTGGTCGTGTACAGAGTAATTTTGCACTTTTTCCATGGTACCCGGATCCT
C
CitationHervé Acloque, Oscar H. Ocaña, Ander Matheu, Karine Rizzoti, Clare Wise, Robin Lovell-Badge, M. Angela Nieto Reciprocal Repression between Sox3 and Snail Transcription Factors Defines Embryonic Territories at Gastrulation. Dev Cell. 2011 September 13; 21(3): 546–558.
CopyrightCopyright © 2011 Published by Elsevier Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001039326.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
stage 4
Early Endoderm
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.7231

Mouse

EmageMGI:107543
EurexpressMGI:107543
MGI GXDMGI:107543

Frog

Xenbase484294

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-991213-1
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