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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SOX7
SRY-box 7

Gene

Official Symbol	SOX7
Official Full Name	SRY-box 7
CGNC ID	12471
also known as	CTD-2135J3.4, transcription factor SOX-7\|SRY (sex determining region Y)-box 7
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001234627
Polypeptide	XP_001234628
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	83595	ENSG00000171056		MIM:612202
Mouse	20680	ENSMUSG00000063060	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:98369
Xenopus	549080, 378665			488066
Zebrafish	394203	ENSDARG00000030125	ZDB-GENE-040109-4	ZFIN:ZDB-GENE-040109-4

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	771337
Ensembl Gene
KEGG	gga:771337

Entry 1

GEISHA Id	SOX7.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGCTGGGAGAGATGGACCGTAATG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGTGTTTGGGGATGGGGGAAAG	cDNA Template Length	755
Forward cDNA Template Probe	show ATGGTCATTTAGCAAACTCTTCCCTTTTTCCCCACTTCCCGACTTTTCCCCTTCCAAGGGGTTTCGCCCATGCCGTTTG CGAGCTGCCGTGACTCTCCCCACATCCAAACCAAATTGAGGGTACCCCCAAACAGGATGCAACCTTCCTGGGCACCCAG ACCATCTCTGCTTTGGAAAAAGGGCTTTGAAAGCCGGAACCCCCCTTGGCCAATTTGGAGCACGACACCCAACGCTTTG CACCGGTGGCAAGCTGACCACCGAAATCCTTTACCCTAACACCCAGGAGACTCCATGGCCCTCTTGGTTCGGATTTGGA CACCCTAAGGGGAAACGAGCAATGTCTCCTTGCAAAACCCCCTGGTCCTTCCTCATCAGGTCTACGTGGCCACAGCTCT AGGAGACCCTGTAATTGTTGTAATAGGTGGGCCTGGCGTCCCCAAAGACCGAAATGAGGCTGGTCTCTGCAGCATGGGA ACTGCCCCCTGTCCAGGCCCAGGGACTTGTCCATTGGGCCAACCCCCCACATGGGGGTCACCGTGGCCGGGGGTGTTTA AAAAATGGTCCAAATCAATAAAGTCCATCTCTCCCAAAAAAAAAA
Comments	No expression detected at or before stage 9.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Unlabeled

Stages 3 & 4.

7-12

stage 9

Unlabeled

Stages 8 & 9.

13-18

stage 14

stage 16

Blood Vessels
Endocardium
Forebrain
Foregut
Hindbrain
Midbrain
Spinal Cord

19-24

stage 23

Blood Vessels
Endocardium
Eye
Head Mesenchyme
Heart
Leg
Lung
Outflow Tract
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Wing

stage 25

Blood Vessels
Endocardium
Eye
Head Mesenchyme
Leg
Lung
Outflow Tract
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Wing

Entry 2

GEISHA Id	SOX7.Javerzat.2009	Data Source	Publication
Complete cDNA Template Probe	show ATGGCCGCGCTGCTGAACACCTACCCGTGGCCGGAGAGGTTGGAGGGGGGGGAGGCCGAGGGGCTGCAAGCGGGGCCGC CCCCAAGGTGCCCACCGGGGGAGAAGGGAGGCGAGAGTCGCATCCGCCGCCCCATGAACGCTTTCATGGTGTGGGCGAA AGACGAGAGGAAAAGGTTGGCCGTGCAGAACCCCGACCTGCACAACGCGGAGCTCAGCAAGATGCTCGGCAAATCCTGG AAGGCTCTGAGCCTCTCACAGAAGCGACCCTATGTGGAGGAGGCCGAGCGGCTGCGGGTCAAGCACATGCAAGATTATC CCAACTACAAGTACCGGCCCCGGAGGAAGAAGCAAGTCAAGAGGATCTGCAAGCGGGTAGACCCCGGTTTTTTGCTGGG CAGCCTCGCACGGGACCAAAACGCCGTGCCTGAGAAGCGGACCTGTGGCCGGGCCGGGGGTGAGAAAGAGGGGCCGGGT GAGTATCCACCTCGCCCGGGGCTGCCACCCATCCGGGGCTACCGGGATCCCCCAGGCAGCGGCAGCAGCACCAGTGTGG ACGCCTACCCCTATGGGCTGCCCACCCCTCCTGAGATGTCTCCGTTGGACGCCATAGACCCAGAACAGAGCTTCTTCTC CTCACCCTGCCCTGAGGAGCATCACCGCTCCCACCTCACCGGAGCTTCCTTCTCCCCGGAGTACGCGGGCAGCTCCCTC CCGTGCAACCACCACCCGCTCAGCCCCATGCCGCAGCCAAATTCCTGCATGATCCCCCCGGCCTCCAGCTGTCCTCCCC TTCCTCCTCCTCCTCCTCCAAGCTACTACACACCCGCTTTCCCCTCTTTGCACCCCACCAGCCTCCACGCCCACCTGGG CCAGCTCTCTCCACCGCCCGACCACCATGGCTTCGACACCTTGGACCAGCTGAGCCAAGCTGAGCTGCTGGGAGAGATG GACCGTAATGAATTCGACCAATATCTCAACACCCCCGGCCACAGTGACCACCATGCTGGAGGTTTGGCCAATGGACACG TCCCTGTGGCCTCGACAGCTGGCAGCTCCCATGCTGCAGAGACCAGCCTCATCTCCGTCCTTGCCGACGCCACGGCCAC CTACTACAACAACTACAGCGTCTCCTAGAGCCGTGGCCACGTAGACCTGCTGAGGAAGGACCTGGCGGTATTGCAAGGG GACATTGCTCGTTTCCCCTTAGGGTGTCCGAATCCGAACCACTAGGGCCATGGAGTCTCCTTGGTGCTTAGGTAAAGGA TTTCGGTCGTCAGCTTGCCACCGGTGCAAAGCGTTGGGTGTCGTGCTCCAAAATGGCCAAGGGGGGTTCCTGCTGTCAA AGCCCCTCTTCCAAAGCAGAGATGGTCTGGGTGCACAGGAAGGCTGCATCCTGTTTTGGGGTACCCTCAATTCTGCTTT GGAGTTGGGAGAGTCACGACAGCTCGCAAACAGCATGGGCGAAACCCCTTTGAATGGGAAAAGTCAGGAAGTGGGGAAA AAGGGAAGAGTTTGCTAAATGAGCATGTGATCTGTGAGTGCGCTTTACCCCAAGAGCCTACTCTGGGTTTTGGGCCCAG GCAAGCAGTGCTGCCCCATGTCCCTGCTCTTGGTGTTGGTGATGCTGCCTCCCAGCCAGGCCGAGCACACCAGCAGAGT CAAACATTGCCTTTCCCCCATCCCCAAACATGTTGCATTGTCCCAAGTGGTGTCTTCATCCCTGGGGACCCCCCAGAGG ACAAGGCAGCAGCCCTGGGTGGGCACCAGAGGCAGCATGGGGTGCAACCTCCATGCATTTCGGGGGAGGCTGAGATCAG GGGTGCATGGCAGGATCCGGCCCTGTATGCATCCTGCTTGGCCTCCCAACAAGAGCGATCCCAAAGTGGGAGCGGGAGG AGCTCCGCACCCCACCAGGCCAGGAAAAAGTCTTCAGATGAGCACTTTGGCAAAGAGATGATGATGTAGCAGACACGTT TTTATCAAGCATCCTTTGAGGACGAACGCTTAATGTTTCGAGCCGCAGTGCCCAATGTCTCCTCTAACTTCCACGTATT ATTGCTTGTAATAAAGCTGTACATTGATTTATTCCTTCCATTATTCCTCCCCTCGGATTTTGTATTGCTCGAGTTCTCT TTCTTTTCATAAAGATGAAGCTTTATTTTAAATCAGTTATATGACATGATTAATCTTAGTGTTTACTGTATGGCACTTG GTAATGATTAGTTAGTAGCGTGGCTATGATTTTCTGGTTTCAGTCCCAAACGTGTATTAATAATAATTGCAAATAATAC TCAAAAAACATGACTTCCCAGGTTTTTAAGCTAATACATTCCATCTTTTTTTGTGTGACTCTATGCATTTTGAATGAGT GTACATATGAGTTTGCATAAAATATTTAATTTAAATAAATATGTTTTTATACGATGATTGTTTTATGATTTAAATTGCT GTAGCTATTGACAACGTTTTCAAAGGAGAAACATTTCCTGTGCGAGTGCTATTTTTTTAAGGTTTTGTTGTTGTTATTG TTGGTATTTTCAGCCAAACTTTTCTACTTCCGTTTTTTGGTTGTTGGTTTTTTGTTTTGTTTTTTTTTTAATAAAAAAG ATCCGTGGTTATCTTTACGAA
Citation	Javerzat S, Franco M, Herbert J, Platonova N, Peille AL, Pantesco V, De Vos J, Assou S, Bicknell R, Bikfalvi A, Hagedorn M. Correlating global gene regulation to angiogenesis in the developing chick extra-embryonic vascular system. PLoS One. 2009 Nov 17;4(11):e7856.
Copyright	Copyright Javerzat et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Comments	Briefly, for SOX7 PCR products were amplified with indicated chicken-specific primers and cloned: F: TGCTTAGGTAAAGGATTTCG, R: GAAAATCATAGCCACGCTAC and probe sequence was extracted from NCBI Acc#XM_001234627.1.