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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ST8SIA2
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2

Gene

Official Symbol	ST8SIA2
Official Full Name	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
CGNC ID	5194
also known as	SIAT8B, alpha-2,8-sialyltransferase 8B
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001001604
Polypeptide	NP_001001604

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	8128	ENSG00000140557		MIM:602546
Mouse	20450	ENSMUSG00000025789	All phenotypic alleles (1):Targeted, knock-out(1)	MGI:106020
Xenopus	779791, 397702			960441
Zebrafish	555134	ENSDARG00000018788	ZDB-GENE-020919-4	ZFIN:ZDB-GENE-020919-4

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	414336
Ensembl Gene
KEGG	gga:414336

Entry 1

GEISHA Id	ST8SIA2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TCGTCTCCAGCTGTTGTTG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGATAGAGATGGATGCGGTTGC	cDNA Template Length
Forward cDNA Template Probe	show AGGGCCAAGGTGTAATGAAGGAGGCCAGTGGTGGGTCGCTTGATGTGCACCTTGTTGGTCAGCCAGTACCCTCGGTACG GCGTGCAGCAGGCGCAGCGAGGGGTAGGCAGTCCTGACGTTGATGCGGTGTTTCAGGATGAGCTCATTGACCCACTCCA CGCGCTCCTTGCCCCCCTTGGCCATGAAGGCGGGGATCCAGAGGATGCTGCCATTGAGGCTGTGCAGGCGCTGCAGCAG CTTCTCCCGCCACGTCTCATTCACCAGGTCCTCGAAGGCTCGCTGGATGACCGATGGGTTCATGGTCACCAGGTCTGTC TTCGTCCCCACGTCCTGCGAGTACTCCTGCACAGGAGCCAGGTTGCACCTGATGACAAAGCTGTGTGTGTCGATCTCGG GGCCACAGCCACTGCCCAGCAGCACCCCCGAGTTGCCTACGATGGCACAGGAGGGGAATTGCTTGCCCTTGAGGGGCGA GGTGCGGGGCAGCAGCTCATACAGGTTCTGCGAGACGTTCATGGTGCTGTCCCGGTCAAAGACGTAGTGAATGACATCC CCAGGCTTCAGCGTCCCCTTCAGCACGGAAATGTCCTTCTCTGCATCCAGGAACTTCAAGATCTGTTTCCTGATCTTCA AAGAGAGTGTCTGGTTGTGTCTCCATTTGGATGAGGCTGGTTTAATGTTGTGCTTAATGCTTTCATTACTTCTGTCAAC AACAGCTGGGAAAACGAAAA

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Early Mesoderm

4-6

stage 4

Early Mesoderm
Primitive Streak

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Somites

13-18

stage 15

stage 17

Ear/Otic Placode
Esophagus
Eye
Forebrain
Foregut
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Lung
Midbrain
Myotome
Neural Plate/Tube
Pharyngeal Arches and Clefts
Pineal Gland
Spinal Cord
Tail
Telencephalon

cross section just posterior to heart, anteriorward

19-24

stage 19

stage 22

stage 24

Cranial Ganglia
Cranial PNS
Ear/Otic Placode
Eye
Forebrain
Foregut
Gut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Lung
Mesonephros
Midbrain
Myotome
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

stage 25

Cranial PNS
Ear/Otic Placode
Eye
Forebrain
Gut
Hindbrain
Leg Mesenchyme
Mesonephros
Midbrain
Myotome
Nasal Placode/Nerve
Sclerotome
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 2

GEISHA Id	ST8SIA2.Alev.2010	Data Source	Publication
Complete cDNA Template Probe	show TTCGTCTCCAGCTGTTGTTGACAGAAGTAATGAAAGCATTAAGCACAACATTAAACCAGCCTCATCCAAATGGAGACAC AACCAGACACTCTCTTTGAAGATCAGGAAACAGATCTTGAAGTTCCTGGATGCAGAGAAGGACATTTCCGTGCTGAAGG GGACGCTGAAGCCTGGGGATGTCATTCACTACGTCTTTGACCGGGACAGCACCATGAACGTCTCGCAGAACCTGTATGA GCTGCTGCCCCGCACCTCGCCCCTCAAGGGCAAGCAATTCCCCTCCTGTGCCATCGTAGGCAACTCGGGGGTGCTGCTG GGCAGCGGCTGTGGCCCCGAGATCGACACACACAGCTTTGTCATCAGGTGCAACCTGGCTCCCGTGCAGGAGTACTCGC AGGACGTGGGGACGAAGACAGACCTGGTGACCATGAACCCGTCGGTCATCCAGCGAGCCTTCGAGGACCTGATGAATGA GACGTGGCGGGAGAAGCTGCTGCAGCGCCTGCACAGCCTCAATGGCAGCATCCTCTGGATCCCCGCCTTCATGGCCAAG GGGGGCAAGGAGCGCGTGGAGTGGGTCAATGAGCTCATCCTGAAACACCGCATCAACGTCAGGACTGCCTACCCCTCGC TGCGCCTGCTGCACGCCGTCCGAGGGTACTGGCTGACCAACAAGGTGCACATCAAGCGACCCACCACTGGCCTCCTCAT GTACACCTTGGCCACTCGCTTCTGCAACCGCATCCATCTCTAT
Citation	Alev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28.
Copyright	Published by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng.
Comments	FORWARD PRIMER TTCGTCTCCAGCTGTTGTTG REVERSE PRIMER ATAGAGATGGATGCGGTTGC