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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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STRA6
stimulated by retinoic acid 6

The human orthologue of this gene is associated
with the following human disease:

Microphthalmia, syndromic 9

Gene

Official Symbol	STRA6
Official Full Name	stimulated by retinoic acid 6
CGNC ID	1001
also known as	receptor for retinol uptake STRA6\|stimulated by retinoic acid gene 6 homolog
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_413689
Polypeptide	XP_413689

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	64220	ENSG00000137868	MIM:601186	MIM:610745
Mouse	20897	ENSMUSG00000032327	All phenotypic alleles (2):Targeted, other(2)	MGI:107742
Xenopus	100124902			1002041
Zebrafish	724007	ENSDARG00000051874	ZDB-GENE-060616-252	ZFIN:ZDB-GENE-060616-252

Gene Ontology

Molecular Function	calcium ion binding
Biological Process	cardiac epithelial to mesenchymal transition, homophilic cell adhesion
Cellular Component	cell junction, integral component of membrane, plasma membrane

Links to other databases

Entrez Gene	415301
Ensembl Gene	ENSGALG00000001449
KEGG	gga:415301

Entry 1

GEISHA Id	STRA6.Reijntjes.2010	Data Source	Publication
Complete cDNA Template Probe	show `CGAGCTCTCTACATCGTCACCTATCTACTGTTTCCCATCAATGTGTTGGTGGGGGTCCTGGCGGGGGTCTGGAGGATGG TTATCTCTGCCCTCTACAACGCCATCCACTTCTGCCAGTTGGACATCAGCTTACTGAACCGTGGTGTGGAGACTTTTGA CCCAGGCTACCACGCATACTGCCACTACCTGAAGACGGAGGTCAGCCAGTCGCACCCACTGATGAGAGCCTTCTGCCTG CTGCTCCTCCAGCCCACGAAGCCACAGGGCCCACCTGAGCCCCGGATGGGGGACCTGGAAGAAGGCCTCCAGCTGATGC ACACCAAGAAGGCACCATCAGGTGGGGGCCGACTGAAGCGGAGCCGGGCACGCTGGTGGTTGGCCTACACCCTCCTCAA CAA`
Citation	Reijntjes S, Zile MH, Maden M. The expression of Stra6 and Rdh10 in the avian embryo and their contribution to the generation of retinoid signatures. Int J Dev Biol. 2010;54(8-9):1267-75.
Copyright	© 2010 UBC Press
Comments	The cDNA template used to generate the probe was obtained by PCR as described in Reijntjes et al. Fig. 2. (L&N) Show expression of STRA6 in a stage 10 & stage 14 quail embryo.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Early Mesoderm
Epiblast
Hensen's Node
Neural Plate/Tube

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

Central Nervous System
Hensen's Node
Neural Plate/Tube
Notochord
Primitive Streak
Sclerotome
Somites
Unlabeled

in situ in a stage 10 quail embryo

13-18

stage 13

stage 14

stage 16

stage 18

Hindbrain
Hindgut
Mesonephros
Retina
Rhombomeres
Somites

coelomic epithelium
in situ in a stage 14 quail embryo

19-23

stage 19

stage 21

stage 23

Diencephalon
Eye
Hindbrain
Limb Buds
Mesonephros
Neural Plate/Tube
Retina
Somites

neural tube roof plate

Entry 2

GEISHA Id	STRA6.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show GCCGGTGCGCTGAACTTTGTCTGCGGGATTGCATGGCTGCCGCCGCGCCGTGCTGATGCTCTGAGCCCTGCACAGCCGT GTCCGTCCTCCAGCCGAGCCACAGGTCGGGAGCAGGAAGAAGGCGCTCATGGCAGCCAACAACTCCGGGGCCGCGCACG GCTCGCTGCTGGATGACAGCTTTGGGGATGACCTGCTGTCCGACTGGTACATCTATGAGACAGCAGAGCCAGCTGCACC GCAGGATGACATGTTTCCCAGCACCATCCCAGAATGTGACCCCACCGTTTCCCCCAGGCTGTACCACACCTGTATGGCA CCCATCTCCCTGGCCGTGCTGCTGGGCTTGTCCTTGCTGGTGAAACGCAGGCATCTCCACCGGGACTGCTGGAACGGCA TCCCTGGGCTGCTCAGCCCAGCTAACTTCCTGGAGGAGGAGGGCAACAGAGGGCTGATGGCCGCGGTGTTCGGCATCCT CTTCTCCTCACTGTGTGTGCTGGTGCTGGACGCCGACCCTCTGCCTCTCATCACCCACTCCTCCCAGCACAGCCGGGAG TACTGGAAGATCCTGGCTTTGCTCTACTACCCCGCCTTCTACTACCCCTTGGCCGCCTGCGCCACGGTGGGGCACAGGG CCAGCTACCTGCTGGGCTGCCTGCTCTCCTGGTGCCACTGCGTGGTCCATGTCTGGCAGAAGGTGGACTGCCCCCAGTC GCCAAAGATATATAGGTATTACTCCATGCTCTCTTATGTCCCCATCATCCTCTGCCTCGTGGTCTTAAGTCTGTGGTAC CCAGCCCTGCTGATCAGGAGCTTCACAGAGAAGGAGGAGACCTCAAACAAGGAGGTTACAGGGAGAGGCTATTACAAGA AGTACCTCAAGGCTGTGCTGTCCAGGCGGCTGCAGAAGGGGAGCACCCCAAAGCTGGAGGAGAGCCTCGTGTCCCGGCT CCGTGCCTACCTGTGCTCCTACATCTATGCTCCAGAGGAAGGTTTCCAGCTGCCGCTGAAGCTCGTCCTGTCCATGACC ACATCAGTCATTGCTGTCTACCAGGTGGCCCTGCTGCTGCTGGTGGCCTTCGTCCCCACCATCCAAATCGTGCGAGCAG GCATGACGAAGGACGTGGTGGTGCTGCTGGTGCAGTTCGGGCTGGTGCCCTCAGAGAACCCGGGCATGCCAGGGGACAT GGAGAAGGAGCTCAGCACTGTCAAGCACTACCTGTGGTCGCTGGAAGTGTGCTACGTGTGCTCGCTGGTGCTGTGCTGC CTGCTGACCCTCGCCATGCTGCTGAGGACACTGGTGATGCACAGGAGCAACCTGAAGGCGCTGTACCAAGGGGCTGTGC TCGATGTCTTCTACAAAGCCCACATCCTCCGCCCATCCCGACAAGCCATCGTCTGCTGGATGAGCTTCGCCAGCTTCCA GACAGCTTTTGCCTGCCTGGGTCTCCTCATCCAGCAAGTGATTTTCTTCATCTGCTTTGCTGCCTTCACCTTCCTTGTC GTCATCCCGCTGCAGTCTGGCACAAGCTCATACCTCTTCAAAGTCGTGCGGAACATGTGGCCCTTCTGGCTGACCCTGG TGGTGGCTGTCATCGTGCAGAACGTGGCAGCTCACTACCAGTTCCTGGAGCAGCATCCCCTGCGGAAAGAGCTGACCAA CAGACGAGCTCTCTACATCGTCACCTATCTGCTGTTTCCCATCAATGTGTTGGTGGGGGTCCTGGCGGGGGTCTGGAGG ATGGTTATCTCTGCCCTCTACAACGCCATCCACTTCTGCCAGTTGGACATCAGCTTACTGAACCGTGGTGTGGAGACTT TTGACCCAGGCTACCACGCATACTGCCACTACCTGAAGACAGAGGTCAGCCAGTCGCACCCACTGATGAGAGCCTTCTG CCTGCTGCTCCTCCAGCCCACGAAGCCACAGGGCCCACCTGAGCCCCGGATGGGGGACCTGGAAGAAGGCCTCCAGCTG ATGCACACCAAGAAGGCACCATCAGGCGGGGGCCGACTGAAGCGGAGCCGGGCACGCTGGTGGTTGGCCTACACCCTCC TCAACAACCCCTCGCTGATGGGCTGCCGAAAAACCGCCCTCTGCGACCCCACAGCCAACGGGGCCCAGCTCAGCCCCCC CAGGCCCTGACCTCCGCCCCCTGCCTCTTCCCTCCCATCCCATCCCGCCTCCCATTGACTTTCCTCCCATGATGGAAGG AGGTTGGGCGCTCCTGTCCCTCTCCAGCAGTGACAGCACTGGTTTGTAGCTCTGGGGCCATGTGGGATGCAGAGGTGAT GACACAGCCAAGGCACACGGGTCTAAGCCCGAGCTGGGAGGAGAGGCTCGGTGAGCCAAGCCAGACCCTTCAGCCATCC CAAAAGTCCTCTTAGGGTCACTTCTGAGATAAGTCCACCGAGGTCCCCTCCACCAGCACCATCCCTACCATCCTCATGG GTCTTTTCCCATTTCACATGCTCTGTTTTAGGCTGGGAGGTTGCAAAACAGTTCATTTGGGGCTCCCGTAGCTCTCATC CTCCAGTTTACCCTACTGGGGCTGTTTCCTCCCCTGCTGCTGCCCCTTTGTGCTCAAAGTTAGCTGTTCTCCAGGACCA GCCAGCCCCAAGCCCATAGAGCAGCATCATGCCTCCTTGGGCCGTGCCGAGCTGGGGAAGAACAATAAATCATATACCT CATTGCTA
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001293202 ).