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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SEMA3C
semaphorin 3C

Gene

Official Symbol	SEMA3C
Official Full Name	semaphorin 3C
CGNC ID	49039
also known as	semaphorin-3C, semaphorin-3C\|COLL-3\|collapsin-3\|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204243
Polypeptide	NP_989574
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.43584

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	10512	ENSG00000075223		MIM:602645
Mouse	20348	ENSMUSG00000028780	All phenotypic alleles (2):Chemically induced(1) Targeted, other(1)	MGI:107557
Xenopus	613059, 495257			1014799
Zebrafish	553130	ENSDARG00000034300	ZDB-GENE-050513-5	ZFIN:ZDB-GENE-050513-5

Gene Ontology

Molecular Function	receptor activity
Biological Process	cell differentiation, nervous system development
Cellular Component	extracellular region, membrane

Links to other databases

Entrez Gene	374090
Ensembl Gene
KEGG	gga:374090

Entry 1

GEISHA Id	Sema3C.Riley.2010	Data Source	Publication
Complete cDNA Template Probe	show CTGAAGAGATGGCAGTTCTTGCACTGCACGCGGTGTTTGGGATATTTATTTACTTTAGCAGTGTAAAAGGATCTTCCCA GCCTCAAGCAAGGGTGTTTTTAACATTCAATGAGCTGCAAGAGACTAAGACCTCCGAATACCACAGAATATCACACAGT CCTCTGGATTACAGGATATTATTAATGGATGAAGATCAGGATCGAATCTATGTGGGCAGCAAAGATCACATTCTGTCTT TGAATATCAATAATATAAGCCAAGACCCTCTTAGTATTTTCTGGCCAGCATCAGCAAACAAGGTTGAAGAGTGCAAAAT GGCTGGCAAAGATCCTACACATGGCTGTGGAAATTTTGTGAGGGTGATACAGTCATACAATCGCACACACCTGTATGTT TGTGGCAGTGGAGCCTTCAGCCCAGTGTGTGTGTATGTCAACAGGGGACGCAGATCTGAGGAACAAATCTTCAAGATTG ACTCGAAGTGTGAATCAGGGAAGGGACGCTGCTCTTTCAACCCAAATGTGAACACAGTGTCTGTTATGATCAATGAAGA GCTTTTTTCAGGAATGTATATTGATTTTATGGGGACAGATGCAGCCATTTTTCGGAGCCTGACCAAGCGGAATGCCGTG CGAACTGACCAGCACAACTCAAAGTGGCTGAGTGAGCCTATTTTTGTAGATGCTCATGTTATACCAGATGGCACTGACC CCAATGATGCAAAAATATATTTTTTTTTCAAAGAGAGACTGACAGACAACAGTGGCAGCACCAAGCAAATTCACTCAAT GATTGCAAGAATATGTCCAAATGATACAGGTGGTCAGCGTAGTCTTGTGAACAAGTGGACTACATTCTTGAAAGCAAGA CTGGTGTGCTCAGTAATGGATGAAGATGGAACAGAAACATACTTTGATGAATTAGAGGATGTGTTTCTTTTGGAGACAG ATAACCCCAGAACAACACTTGTGTATGGAATTTTTACAACATCAAGCTCCATTTTTAAAGGCTCAGCTGTGTGTGTGTA TCATTTGTCTGACATCCAGACTGTGTTCAATGGGCCATTTGCACACAAGGAGGGCCCAAACCATCAGCTGATTCCATAT CAGGGCAGAATTCCGTACCCACGACCTGGCACTTGTCCAGGAGGAGCTTTCACACCCAATATGCGGACAACCAAAGAGT TTCCAGATGATGTTGTGACCTTCATTAGAAATCATCCTTTGATGTATAATCCCATTTACCCAATACATAAGAGGCCATT AATCATCCGGATAGGAACGGACTACAAGTATACAAAGATTGCTGTGGACCGAGTGAATGCTGCTGATGGAAGATGCCAT GTCTTGTTTCTTGGAACAGATCAAGGAACTGTACAAAAAGTTGTTGTCTTACCCACCAACTTCTCTGCAAGTGGAGAAC TCATTTTAGAAGAGCTGGAAGTTTTTCAGAGTAATTCTCCTATAACAACAATGAAGATTTCATCTAAAAAGCAACAGCT GTACGTGAGCTCAGAGGAAGGGGTCACACAGGTCCCCTTGCACCGCTGCCGCATCTATGGGACTGCCTGTGCTGACTGT TGCCTCGCCCGAGACCCGTACTGCGCCTGGGATGGCAACTCCTGCTCCAGGTTCTATCCCACAGGGAAAAGGAGGAGTC GTAGGCAAGACGTGAGACATGGAAACCCTCTGACTCAGTGCCGAGGTTTCAACCTGAAAGCATACAGAAATGCAGCAGA AACAGTCCAATATGGAGTAAAAAACAATACCACCTTTCTTGAATGTACACCCAAATCTCCTCAGGCTTCCATTAAATGG CTGCTACAGAAAGATAATGACAGGAGGAAAGAGGTTAAGCTGAGTGAGAGAATCATAGCTACTGAGCAAGGACTTCTCA TTCGCTCTGTCCAAGACAGTGATCGGGGGCTTTATCACTGCATTGCAACAGAGAACAATTTCAAGCAGACCTTAGCAAA GATCAATTTCAAAGTGCTGGATACAGAGATGGTGGCCTATATGACTGACAAGTGGTCCCCGTGGACCTGGGCCAGCTCC GTGCGAGCCCTGCAGTTCCACCCGAAGGACTTTGTGGGAGCTTTTAGTCACTCCGAAATGCAGATGATCAACCAATACT GCAAAGACAGTAGACAGCAAGGTCAGCGGAGGGAAGAACCCCAGAAGATGAGAGGGGACTACAGCAAACTAAAGGCCCT TATCAATAGCAGGAAAAGTAGAAATAGAAGAAATCAGTTACCTGCTTCTTAATTTATTTGCAGCAGGAGATATCTTTGT CTCACTGTAGAGGCTTATATTTGCTGTGAGACCGAGACGTTGCAA
Citation	Riley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204243.1).

Stage

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13-18

stage 17

Midbrain

19-20

stage 20

Midbrain

Entry 2

GEISHA Id	SEMA3C.Ferrario.2012	Data Source	Publication
Complete cDNA Template Probe	show CTGAAGAGATGGCAGTTCTTGCACTGCACGCGGTGTTTGGGATATTTATTTACTTTAGCAGTGTAAAAGGATCTTCCCA GCCTCAAGCAAGGGTGTTTTTAACATTCAATGAGCTGCAAGAGACTAAGACCTCCGAATACCACAGAATATCACACAGT CCTCTGGATTACAGGATATTATTAATGGATGAAGATCAGGATCGAATCTATGTGGGCAGCAAAGATCACATTCTGTCTT TGAATATCAATAATATAAGCCAAGACCCTCTTAGTATTTTCTGGCCAGCATCAGCAAACAAGGTTGAAGAGTGCAAAAT GGCTGGCAAAGATCCTACACATGGCTGTGGAAATTTTGTGAGGGTGATACAGTCATACAATCGCACACACCTGTATGTT TGTGGCAGTGGAGCCTTCAGCCCAGTGTGTGTGTATGTCAACAGGGGACGCAGATCTGAGGAACAAATCTTCAAGATTG ACTCGAAGTGTGAATCAGGGAAGGGACGCTGCTCTTTCAACCCAAATGTGAACACAGTGTCTGTTATGATCAATGAAGA GCTTTTTTCAGGAATGTATATTGATTTTATGGGGACAGATGCAGCCATTTTTCGGAGCCTGACCAAGCGGAATGCCGTG CGAACTGACCAGCACAACTCAAAGTGGCTGAGTGAGCCTATTTTTGTAGATGCTCATGTTATACCAGATGGCACTGACC CCAATGATGCAAAAATATATTTTTTTTTCAAAGAGAGACTGACAGACAACAGTGGCAGCACCAAGCAAATTCACTCAAT GATTGCAAGAATATGTCCAAATGATACAGGTGGTCAGCGTAGTCTTGTGAACAAGTGGACTACATTCTTGAAAGCAAGA CTGGTGTGCTCAGTAATGGATGAAGATGGAACAGAAACATACTTTGATGAATTAGAGGATGTGTTTCTTTTGGAGACAG ATAACCCCAGAACAACACTTGTGTATGGAATTTTTACAACATCAAGCTCCATTTTTAAAGGCTCAGCTGTGTGTGTGTA TCATTTGTCTGACATCCAGACTGTGTTCAATGGGCCATTTGCACACAAGGAGGGCCCAAACCATCAGCTGATTCCATAT CAGGGCAGAATTCCGTACCCACGACCTGGCACTTGTCCAGGAGGAGCTTTCACACCCAATATGCGGACAACCAAAGAGT TTCCAGATGATGTTGTGACCTTCATTAGAAATCATCCTTTGATGTATAATCCCATTTACCCAATACATAAGAGGCCATT AATCATCCGGATAGGAACGGACTACAAGTATACAAAGATTGCTGTGGACCGAGTGAATGCTGCTGATGGAAGATGCCAT GTCTTGTTTCTTGGAACAGATCAAGGAACTGTACAAAAAGTTGTTGTCTTACCCACCAACTTCTCTGCAAGTGGAGAAC TCATTTTAGAAGAGCTGGAAGTTTTTCAGAGTAATTCTCCTATAACAACAATGAAGATTTCATCTAAAAAGCAACAGCT GTACGTGAGCTCAGAGGAAGGGGTCACACAGGTCCCCTTGCACCGCTGCCGCATCTATGGGACTGCCTGTGCTGACTGT TGCCTCGCCCGAGACCCGTACTGCGCCTGGGATGGCAACTCCTGCTCCAGGTTCTATCCCACAGGGAAAAGGAGGAGTC GTAGGCAAGACGTGAGACATGGAAACCCTCTGACTCAGTGCCGAGGTTTCAACCTGAAAGCATACAGAAATGCAGCAGA AACAGTCCAATATGGAGTAAAAAACAATACCACCTTTCTTGAATGTACACCCAAATCTCCTCAGGCTTCCATTAAATGG CTGCTACAGAAAGATAATGACAGGAGGAAAGAGGTTAAGCTGAGTGAGAGAATCATAGCTACTGAGCAAGGACTTCTCA TTCGCTCTGTCCAAGACAGTGATCGGGGGCTTTATCACTGCATTGCAACAGAGAACAATTTCAAGCAGACCTTAGCAAA GATCAATTTCAAAGTGCTGGATACAGAGATGGTGGCCTATATGACTGACAAGTGGTCCCCGTGGACCTGGGCCAGCTCC GTGCGAGCCCTGCAGTTCCACCCGAAGGACTTTGTGGGAGCTTTTAGTCACTCCGAAATGCAGATGATCAACCAATACT GCAAAGACAGTAGACAGCAAGGTCAGCGGAGGGAAGAACCCCAGAAGATGAGAGGGGACTACAGCAAACTAAAGGCCCT TATCAATAGCAGGAAAAGTAGAAATAGAAGAAATCAGTTACCTGCTTCTTAATTTATTTGCAGCAGGAGATATCTTTGT CTCACTGTAGAGGCTTATATTTGCTGTGAGACCGAGACGTTGCAA
Citation	Ferrario JE, Baskaran P, Clark C, Hendry A, Lerner O, Hintze M, Allen J, Chilton JK, Guthrie S. Axon guidance in the developing ocular motor system and Duane retraction syndrome depends on Semaphorin signaling via alpha2-chimaerin. Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14669-74.
Copyright	Copyright © 2012 National Academy of Sciences.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204243.1).